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Lcy06g016880 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g016880
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
Genome locationChr06:38742536..38743087
RNA-Seq ExpressionLcy06g016880
SyntenyLcy06g016880
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]8.5e-4863.12Show/hide
Query:  HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLH
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCFAILC  LLRT +GL  T++VDVEEMVAMFLH
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLH

Query:  IVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE
        I+AHDVKNRVI+R+F RSGETISRHFN  L  V+ L+D LLKKP+P+   C D RW+WFE
Subjt:  IVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE
KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-4762.5Show/hide
Query:  HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLH
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCFAILC  LLRT +GL  T++VDVEEMVAMFLH
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLH

Query:  IVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE
        I+AHDVKNRVI+R+F RSGETISRHFN  L  V+ L++ LLKKP+P+   C D RW+WFE
Subjt:  IVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE
KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]8.5e-4863.12Show/hide
Query:  HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLH
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCFAILC  LLRT +GL  T++VDVEEMVAMFLH
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLH

Query:  IVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE
        I+AHDVKNRVI+R+F RSGETISRHFN  L  V+ L+D LLKKP+P+   C D RW+WFE
Subjt:  IVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE
KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-4763.12Show/hide
Query:  HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLH
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCFAILC  LLRT +GL  T++VDVEEMVAMFLH
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLH

Query:  IVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE
        I+AHDVKNRVI+R+F RSGETISRHFN  L  V+ L++ LLKKP+P+   C D RWKWFE
Subjt:  IVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE
KAA0065736.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-4762.5Show/hide
Query:  HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLH
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IHESDL CR+STRMDRRCFAILC  LLRT +GL  T++VDVEEMVAMFLH
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLH

Query:  IVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE
        I+AHDVKNRVI+R+F RSGETI RHFN     V+ L+D LLKKP+P+   C D RW+WFE
Subjt:  IVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE
TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein4.1e-4863.12Show/hide
Query:  HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLH
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCFAILC  LLRT +GL  T++VDVEEMVAMFLH
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLH

Query:  IVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE
        I+AHDVKNRVI+R+F RSGETISRHFN  L  V+ L+D LLKKP+P+   C D RW+WFE
Subjt:  IVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE
A0A5A7TXW1 Retrotransposon protein4.1e-4863.12Show/hide
Query:  HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLH
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCFAILC  LLRT +GL  T++VDVEEMVAMFLH
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLH

Query:  IVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE
        I+AHDVKNRVI+R+F RSGETISRHFN  L  V+ L+D LLKKP+P+   C D RW+WFE
Subjt:  IVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE
A0A5A7U476 Retrotransposon protein5.4e-4863.12Show/hide
Query:  HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLH
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCFAILC  LLRT +GL  T++VDVEEMVAMFLH
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLH

Query:  IVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE
        I+AHDVKNRVI+R+F RSGETISRHFN  L  V+ L++ LLKKP+P+   C D RWKWFE
Subjt:  IVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE
A0A5A7VHB0 Retrotransposon protein1.2e-4762.5Show/hide
Query:  HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLH
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IHESDL CR+STRMDRRCFAILC  LLRT +GL  T++VDVEEMVAMFLH
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLH

Query:  IVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE
        I+AHDVKNRVI+R+F RSGETI RHFN     V+ L+D LLKKP+P+   C D RW+WFE
Subjt:  IVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE
A0A5D3BDX0 Retrotransposon protein1.2e-4762.5Show/hide
Query:  HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLH
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCFAILC  LLRT +GL  T++VDVEEMVAMFLH
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLH

Query:  IVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE
        I+AHDVKNRVI+R+F RSGETISRHFN  L  V+ L++ LLKKP+P+   C D RW+WFE
Subjt:  IVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)4.4e-1037.08Show/hide
Query:  FRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLHIVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLL
        +++++  +  C E+ RMD+  F  LC  LL+T   L  T  + +E  +A+FL I+ H+++ R ++  F  SGETISRHFN  L+ V+ +
Subjt:  FRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLHIVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCCATAACCCCACATGAACTTGTCTCCATACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTTCTTCATGAACAACCACCGTAGGAT
AGAAAACCAATCTCCCTACATCAGACACCAGATAAGGCAGTTAGCCTGCTTTCGGTTGATCCATGAAAGTGACCTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGAT
GTTTTGCCATACTATGTAGTTTGCTGCTGAGAACGACTTCCGGGTTGGTAGGAACGAAAATCGTAGACGTGGAAGAGATGGTTGCGATGTTCTTGCACATCGTTGCTCAC
GATGTTAAGAATCGAGTCATAAGAAGACAGTTTGCACGGTCAGGCGAGACCATTTCTCGGCACTTCAACGCGACTTTGAGTGTCGTACTACTATTGTATGACGTTCTACT
TAAGAAACCGGAACCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGGTATGGATACTATATGTTAGTACACATCGTGAAGATCTTACAACATCTTTCT
GA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCCATAACCCCACATGAACTTGTCTCCATACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTTCTTCATGAACAACCACCGTAGGAT
AGAAAACCAATCTCCCTACATCAGACACCAGATAAGGCAGTTAGCCTGCTTTCGGTTGATCCATGAAAGTGACCTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGAT
GTTTTGCCATACTATGTAGTTTGCTGCTGAGAACGACTTCCGGGTTGGTAGGAACGAAAATCGTAGACGTGGAAGAGATGGTTGCGATGTTCTTGCACATCGTTGCTCAC
GATGTTAAGAATCGAGTCATAAGAAGACAGTTTGCACGGTCAGGCGAGACCATTTCTCGGCACTTCAACGCGACTTTGAGTGTCGTACTACTATTGTATGACGTTCTACT
TAAGAAACCGGAACCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGGTATGGATACTATATGTTAGTACACATCGTGAAGATCTTACAACATCTTTCT
GA
Protein sequenceShow/hide protein sequence
MDSITPHELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLHIVAH
DVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFEVWILYVSTHREDLTTSF