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Lcy06g016900 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g016900
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionF-box protein At3g07870-like
Genome locationChr06:38780541..38785472
RNA-Seq ExpressionLcy06g016900
SyntenyLcy06g016900
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132431.1 F-box protein At3g07870-like [Momordica charantia]8.9e-1739.77Show/hide
Query:  PTCKQVSKVWNNQLVSTCEFIITPISNYHYLAHVSPHHNILHCVHLDTKTMNMVASL----TFPSNFS--HIEIVSSCNGLIC--FIENMTNPTR--VGI
        P C+ V K WNN  + TC+   +  ++  + AH+SP  N L CV LD K + +V+SL      P  FS   I I++SCNGL+C  F    T  +R  + I
Subjt:  PTCKQVSKVWNNQLVSTCEFIITPISNYHYLAHVSPHHNILHCVHLDTKTMNMVASL----TFPSNFS--HIEIVSSCNGLIC--FIENMTNPTR--VGI

Query:  LNLMANDCLILSRGGSGLSYYYGFGFCPKTKQYKVTRHSFV----IQNFATSLEIFSLGTD---QWSHVGLMCLHI
        LN M N+ LI+   G  + Y YG GF PKTKQYK+ R+S V       F+T +EI + GT    +WS + L  L +
Subjt:  LNLMANDCLILSRGGSGLSYYYGFGFCPKTKQYKVTRHSFV----IQNFATSLEIFSLGTD---QWSHVGLMCLHI

XP_022154078.1 F-box/LRR-repeat protein At2g43260-like [Momordica charantia]5.8e-1640.85Show/hide
Query:  PTCKQVSKVWNNQLVSTCEFIITPISNYHYLAHVSPHHNILHCVHLDTKTMNMVASLTFPSN--FSHIEIVSSCNGLICFI---ENMTNPTRVG-ILNLM
        P+C+ V K WNN LV TC       S+  +  H+SP  + L    +D    + VAS +F SN  F+ I I+ SCNGL+C     E    P R   ILN M
Subjt:  PTCKQVSKVWNNQLVSTCEFIITPISNYHYLAHVSPHHNILHCVHLDTKTMNMVASLTFPSN--FSHIEIVSSCNGLICFI---ENMTNPTRVG-ILNLM

Query:  ANDCLILSRGGSGLSYY-YGFGFCPKTKQYKVTRHSFVIQNFATSLEIFSLGT--DQWSHVGLM
         N+        + + YY +GFGF  KTKQYK+TR SF  +  AT +EIF+LGT   +W+ VG +
Subjt:  ANDCLILSRGGSGLSYY-YGFGFCPKTKQYKVTRHSFVIQNFATSLEIFSLGT--DQWSHVGLM

XP_022933323.1 F-box protein At3g07870-like [Cucurbita moschata]3.2e-1435.16Show/hide
Query:  PTCKQVSKVWNNQLVSTCEFIITPISNYHYLAHV---------SPHHNILHCVHLD---TKTMNMVASLTFPSNF---SHIEIVSSCNGLICFI-----E
        P+C+ V K WNN ++S+        ++  +LAHV         S H   LHC+  D    + +  VAS      +   S I I++SCNGL+ F+      
Subjt:  PTCKQVSKVWNNQLVSTCEFIITPISNYHYLAHV---------SPHHNILHCVHLD---TKTMNMVASLTFPSNF---SHIEIVSSCNGLICFI-----E

Query:  NMTNPTRVGILNLMANDCLILSRG---GSGLSYYYGFGFCPKTKQYKVTRHSFV------IQNFATSLEIFSLGT-DQWSHV
        +  +P  V ILN + N+   L +    G+  +  YGFGFCPKTKQYKV R S V      I N+ T  EIF+ GT  +W+ +
Subjt:  NMTNPTRVGILNLMANDCLILSRG---GSGLSYYYGFGFCPKTKQYKVTRHSFV------IQNFATSLEIFSLGT-DQWSHV

XP_022968850.1 F-box protein At3g07870-like [Cucurbita maxima]3.2e-1436.27Show/hide
Query:  IAELLMS-------PTCKQVSKVWNNQLVST-CEFIITPISNYHYLAHV------SPHHNILHCVHLD---TKTMNMVASLTFPSNF---SHIEIVSSCN
        + EL++S       P+C+ V K WNN ++S+  +  I+  SN+  LAHV       P    LHC+ LD    K +  VASL     +   S I  ++SCN
Subjt:  IAELLMS-------PTCKQVSKVWNNQLVST-CEFIITPISNYHYLAHV------SPHHNILHCVHLD---TKTMNMVASLTFPSNF---SHIEIVSSCN

Query:  GLICFI-----ENMTNPTRVGILNLMANDCLILSRG---GSGLSYYYGFGFCPKTKQYKVTRHSFVIQNFAT-----SLEIFSLGTDQ-WSHV
        GL+ F+     +    P  V I N M N+ L L +       L+  YGFGFCP+TKQYKV R+S V    +T       EIF+ GT Q W+ +
Subjt:  GLICFI-----ENMTNPTRVGILNLMANDCLILSRG---GSGLSYYYGFGFCPKTKQYKVTRHSFVIQNFAT-----SLEIFSLGTDQ-WSHV

XP_038880514.1 putative F-box protein At1g46984 [Benincasa hispida]1.3e-1540.35Show/hide
Query:  PTCKQVSKVWNNQLVSTCEFIIT-PISNYHYLAHVSPHHNILHCVHLD---TKTMNMVASLTFPSNFS----HIEIVSSCNGLICFI-----ENMTNPTR
        PTC+ VS  WNN LV +C+F  +  ISN  +    S     LHCV LD    + M+ VAS TF  N S     I I++SC+GLI  +          P  
Subjt:  PTCKQVSKVWNNQLVSTCEFIIT-PISNYHYLAHVSPHHNILHCVHLD---TKTMNMVASLTFPSNFS----HIEIVSSCNGLICFI-----ENMTNPTR

Query:  VGILNLMANDCLIL----SRGGSGLSYYYGFGFCPKTKQYKVTRHSFVIQNFATSLEIFSLGTD-QWSHVG
        V +LN M N+   L    S+G S   Y+YG GF P+TKQYK+ R  +V   F   +EIF+ GT  +W+ VG
Subjt:  VGILNLMANDCLIL----SRGGSGLSYYYGFGFCPKTKQYKVTRHSFVIQNFATSLEIFSLGTD-QWSHVG

TrEMBL top hitse value%identityAlignment
A0A6J1BS93 F-box protein At3g07870-like4.3e-1739.77Show/hide
Query:  PTCKQVSKVWNNQLVSTCEFIITPISNYHYLAHVSPHHNILHCVHLDTKTMNMVASL----TFPSNFS--HIEIVSSCNGLIC--FIENMTNPTR--VGI
        P C+ V K WNN  + TC+   +  ++  + AH+SP  N L CV LD K + +V+SL      P  FS   I I++SCNGL+C  F    T  +R  + I
Subjt:  PTCKQVSKVWNNQLVSTCEFIITPISNYHYLAHVSPHHNILHCVHLDTKTMNMVASL----TFPSNFS--HIEIVSSCNGLIC--FIENMTNPTR--VGI

Query:  LNLMANDCLILSRGGSGLSYYYGFGFCPKTKQYKVTRHSFV----IQNFATSLEIFSLGTD---QWSHVGLMCLHI
        LN M N+ LI+   G  + Y YG GF PKTKQYK+ R+S V       F+T +EI + GT    +WS + L  L +
Subjt:  LNLMANDCLILSRGGSGLSYYYGFGFCPKTKQYKVTRHSFV----IQNFATSLEIFSLGTD---QWSHVGLMCLHI

A0A6J1DJA3 F-box/LRR-repeat protein At2g43260-like2.8e-1640.85Show/hide
Query:  PTCKQVSKVWNNQLVSTCEFIITPISNYHYLAHVSPHHNILHCVHLDTKTMNMVASLTFPSN--FSHIEIVSSCNGLICFI---ENMTNPTRVG-ILNLM
        P+C+ V K WNN LV TC       S+  +  H+SP  + L    +D    + VAS +F SN  F+ I I+ SCNGL+C     E    P R   ILN M
Subjt:  PTCKQVSKVWNNQLVSTCEFIITPISNYHYLAHVSPHHNILHCVHLDTKTMNMVASLTFPSN--FSHIEIVSSCNGLICFI---ENMTNPTRVG-ILNLM

Query:  ANDCLILSRGGSGLSYY-YGFGFCPKTKQYKVTRHSFVIQNFATSLEIFSLGT--DQWSHVGLM
         N+        + + YY +GFGF  KTKQYK+TR SF  +  AT +EIF+LGT   +W+ VG +
Subjt:  ANDCLILSRGGSGLSYY-YGFGFCPKTKQYKVTRHSFVIQNFATSLEIFSLGT--DQWSHVGLM

A0A6J1F4F5 F-box protein At3g07870-like1.5e-1435.16Show/hide
Query:  PTCKQVSKVWNNQLVSTCEFIITPISNYHYLAHV---------SPHHNILHCVHLD---TKTMNMVASLTFPSNF---SHIEIVSSCNGLICFI-----E
        P+C+ V K WNN ++S+        ++  +LAHV         S H   LHC+  D    + +  VAS      +   S I I++SCNGL+ F+      
Subjt:  PTCKQVSKVWNNQLVSTCEFIITPISNYHYLAHV---------SPHHNILHCVHLD---TKTMNMVASLTFPSNF---SHIEIVSSCNGLICFI-----E

Query:  NMTNPTRVGILNLMANDCLILSRG---GSGLSYYYGFGFCPKTKQYKVTRHSFV------IQNFATSLEIFSLGT-DQWSHV
        +  +P  V ILN + N+   L +    G+  +  YGFGFCPKTKQYKV R S V      I N+ T  EIF+ GT  +W+ +
Subjt:  NMTNPTRVGILNLMANDCLILSRG---GSGLSYYYGFGFCPKTKQYKVTRHSFV------IQNFATSLEIFSLGT-DQWSHV

A0A6J1HDZ2 F-box protein At3g07870-like1.3e-1335.16Show/hide
Query:  PTCKQVSKVWNNQLVSTCEFIITPISNYHYLAHV---------SPHHNILHCVHLDTKTM---NMVASLTFPSNF---SHIEIVSSCNGLICFI-----E
        P+C+ V K WN+ ++S+        ++  +LAHV         S     LHC+ LD   M     VAS      +   S I  ++SCNGL+ F+      
Subjt:  PTCKQVSKVWNNQLVSTCEFIITPISNYHYLAHV---------SPHHNILHCVHLDTKTM---NMVASLTFPSNF---SHIEIVSSCNGLICFI-----E

Query:  NMTNPTRVGILNLMANDCLILSRG---GSGLSYYYGFGFCPKTKQYKVTRHSFV------IQNFATSLEIFSLGT-DQWSHV
        +  +P  V ILN + N+   L +    G+  + YYGFGFCPKTKQYKV R S V      I N+ T  EIF+ GT  +W+ +
Subjt:  NMTNPTRVGILNLMANDCLILSRG---GSGLSYYYGFGFCPKTKQYKVTRHSFV------IQNFATSLEIFSLGT-DQWSHV

A0A6J1HYC7 F-box protein At3g07870-like1.5e-1436.27Show/hide
Query:  IAELLMS-------PTCKQVSKVWNNQLVST-CEFIITPISNYHYLAHV------SPHHNILHCVHLD---TKTMNMVASLTFPSNF---SHIEIVSSCN
        + EL++S       P+C+ V K WNN ++S+  +  I+  SN+  LAHV       P    LHC+ LD    K +  VASL     +   S I  ++SCN
Subjt:  IAELLMS-------PTCKQVSKVWNNQLVST-CEFIITPISNYHYLAHV------SPHHNILHCVHLD---TKTMNMVASLTFPSNF---SHIEIVSSCN

Query:  GLICFI-----ENMTNPTRVGILNLMANDCLILSRG---GSGLSYYYGFGFCPKTKQYKVTRHSFVIQNFAT-----SLEIFSLGTDQ-WSHV
        GL+ F+     +    P  V I N M N+ L L +       L+  YGFGFCP+TKQYKV R+S V    +T       EIF+ GT Q W+ +
Subjt:  GLICFI-----ENMTNPTRVGILNLMANDCLILSRG---GSGLSYYYGFGFCPKTKQYKVTRHSFVIQNFAT-----SLEIFSLGTDQ-WSHV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G07870.1 F-box and associated interaction domains-containing protein5.4e-0430.3Show/hide
Query:  SPHHNILHCVHLDTKTMNMVA---SLTFPSNFSHIEIVSSCNGLICFIENMTNPTRVGILNLMANDCLIL---SRGGSGLSYYYGFGFCPKTKQYKVTR
        SP  N LH + L  +   +     +L F S+    ++V SCNGL+C  +++ N + + + N    + L L   S         +GFGF   TK+YKV +
Subjt:  SPHHNILHCVHLDTKTMNMVA---SLTFPSNFSHIEIVSSCNGLICFIENMTNPTRVGILNLMANDCLIL---SRGGSGLSYYYGFGFCPKTKQYKVTR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAATGTGATGATGATGATGATGATGATTTGCTCCCTTCAAGTGATGAAAGAAACGAGCTGAGTGTTGTTGAGAAAAGTGAAACTTCTTATCATGGAAGG
GAGATGGAAGCGGAGCGGGAGAAAATTGCAGAACTTCTTATGTCACCCACCTGCAAGCAAGTTTCTAAAGTTTGGAACAATCAGCTGGTTTCAACTTGTGAATTT
ATTATTACTCCAATTTCCAACTACCATTATTTGGCTCATGTTTCTCCACATCACAATATCCTCCATTGTGTCCACTTAGATACTAAAACTATGAATATGGTTGCC
TCATTGACATTCCCTTCTAATTTTTCCCACATCGAAATTGTCAGTTCTTGCAATGGACTCATATGTTTCATCGAGAACATGACCAACCCAACTCGTGTCGGCATA
TTGAATCTCATGGCAAATGATTGCCTCATCCTTTCGAGAGGGGGATCGGGTTTATCTTATTACTATGGATTTGGTTTCTGTCCCAAGACGAAGCAATATAAAGTA
ACCAGACACTCCTTTGTAATACAAAATTTTGCCACTTCATTAGAGATTTTCTCATTGGGCACAGACCAATGGAGCCACGTTGGCTTGATGTGTCTTCATATTGAA
TAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAATGTGATGATGATGATGATGATGATTTGCTCCCTTCAAGTGATGAAAGAAACGAGCTGAGTGTTGTTGAGAAAAGTGAAACTTCTTATCATGGAAGG
GAGATGGAAGCGGAGCGGGAGAAAATTGCAGAACTTCTTATGTCACCCACCTGCAAGCAAGTTTCTAAAGTTTGGAACAATCAGCTGGTTTCAACTTGTGAATTT
ATTATTACTCCAATTTCCAACTACCATTATTTGGCTCATGTTTCTCCACATCACAATATCCTCCATTGTGTCCACTTAGATACTAAAACTATGAATATGGTTGCC
TCATTGACATTCCCTTCTAATTTTTCCCACATCGAAATTGTCAGTTCTTGCAATGGACTCATATGTTTCATCGAGAACATGACCAACCCAACTCGTGTCGGCATA
TTGAATCTCATGGCAAATGATTGCCTCATCCTTTCGAGAGGGGGATCGGGTTTATCTTATTACTATGGATTTGGTTTCTGTCCCAAGACGAAGCAATATAAAGTA
ACCAGACACTCCTTTGTAATACAAAATTTTGCCACTTCATTAGAGATTTTCTCATTGGGCACAGACCAATGGAGCCACGTTGGCTTGATGTGTCTTCATATTGAA
TAA
Protein sequenceShow/hide protein sequence
MEECDDDDDDDLLPSSDERNELSVVEKSETSYHGREMEAEREKIAELLMSPTCKQVSKVWNNQLVSTCEFIITPISNYHYLAHVSPHHNILHCVHLDTKTMNMVA
SLTFPSNFSHIEIVSSCNGLICFIENMTNPTRVGILNLMANDCLILSRGGSGLSYYYGFGFCPKTKQYKVTRHSFVIQNFATSLEIFSLGTDQWSHVGLMCLHIE