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Lcy06g017750 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g017750
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr06:40900385..40905924
RNA-Seq ExpressionLcy06g017750
SyntenyLcy06g017750
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]7.3e-1833Show/hide
Query:  RKDWSTKDHWNWMENQLSKEELSRGVTIMWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIEEAYLKTQSPKRLGSHASQIQRVAANPG----------
        R  W+ KD WNW+ N LS EE++  + I W+IWE RN+  S FR  + D      E  L      ++ +   K  G+  SQ +R   N G          
Subjt:  RKDWSTKDHWNWMENQLSKEELSRGVTIMWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIEEAYLKTQSPKRLGSHASQIQRVAANPG----------

Query:  ------------CWNLKSDAAWNDKLNRGGRGWVVRDSDGSLVFFGMHKIKKKWPVKVLEALAMLKGLSEIASTCDRRAIPIEAESDSLEVINILAGETE
                    CW L +DA+W+++   GG GW++ D  G +V  G  KI++K  +  LE + +++GL  I     +   PI  ESDS+EVI ++  E  
Subjt:  ------------CWNLKSDAAWNDKLNRGGRGWVVRDSDGSLVFFGMHKIKKKWPVKVLEALAMLKGLSEIASTCDRRAIPIEAESDSLEVINILAGETE

Query:  DLT
        DLT
Subjt:  DLT

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]4.4e-1530.28Show/hide
Query:  NQLSKEELSRGVTIMWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIEEAYLKTQ-SPKRLGSHASQIQRVAANPGC---------WNLKSDAAWNDKL
        ++  +EE  R + I W+IWE RNK       P   ++  +I+  +  I  A   T    K        I+R+  N G          W L ++AAW    
Subjt:  NQLSKEELSRGVTIMWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIEEAYLKTQ-SPKRLGSHASQIQRVAANPGC---------WNLKSDAAWNDKL

Query:  NRGGRGWVVRDSDGSLVFFGMHKIKKKWPVKVLEALAMLKGLSEIASTCDRRAIPIEAESDSLEVINILAGETEDLTEVKSLTDQILALAANSFGMKFRH
        N GG GW++RD  G ++      I+ +  +  LE +A+ +GL  I     R   PI  ESDSLE I++L  + +D TE+  L ++I  +  +   +  RH
Subjt:  NRGGRGWVVRDSDGSLVFFGMHKIKKKWPVKVLEALAMLKGLSEIASTCDRRAIPIEAESDSLEVINILAGETEDLTEVKSLTDQILALAANSFGMKFRH

Query:  CNRLLNTDAHCVARLAVD
         +R  N  AH +AR A++
Subjt:  CNRLLNTDAHCVARLAVD

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]4.6e-2027.48Show/hide
Query:  SIHDKRKILEGSPWIYDKALMVFEEIKGNERYSRLQFRK-----------------------------------DWSTKDHWNWMENQLSKEELSRGVTI
        ++ DK KIL   PW +DK++++ EE + N  ++ L+FRK                                   +W+TK++W W+ ++  +EE  R + I
Subjt:  SIHDKRKILEGSPWIYDKALMVFEEIKGNERYSRLQFRK-----------------------------------DWSTKDHWNWMENQLSKEELSRGVTI

Query:  MWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIE---EAYL-----KTQSPKRLGSHASQIQRVAAN---------PGCWNLKSDAAWNDKLNRGGRGW
          +IWE RNK           ++F  + S  ++I+   + Y+     +  + KR       I+R+  N            W L +DAAW    N  G GW
Subjt:  MWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIE---EAYL-----KTQSPKRLGSHASQIQRVAAN---------PGCWNLKSDAAWNDKLNRGGRGW

Query:  VVRDSDGSLVFFGMHKIKKKWPVKVLEALAMLKGLSEIASTCDRRAIPIEAESDSLEVINIL
        ++RD  G ++  G   I+ +  +  LE +A+ +GL  I     R   PI  ESDSLE I++L
Subjt:  VVRDSDGSLVFFGMHKIKKKWPVKVLEALAMLKGLSEIASTCDRRAIPIEAESDSLEVINIL

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]1.0e-2431.28Show/hide
Query:  SIHDKRKILEGSPWIYDKALMVFEEIKGNERYSRLQFRKDWSTKDHWNWMENQLSKEELSRGVTIMWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIE
        ++ DK KIL   PW +DK++++ EE + N  ++ L+FR +W+TK++W W+ ++  +EE  R + I  +IWE RNK           ++F  + S  ++I+
Subjt:  SIHDKRKILEGSPWIYDKALMVFEEIKGNERYSRLQFRKDWSTKDHWNWMENQLSKEELSRGVTIMWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIE

Query:  ---EAYL-----KTQSPKRLGSHASQIQRVAAN---------PGCWNLKSDAAWNDKLNRGGRGWVVRDSDGSLVFFGMHKIKKKWPVKVLEALAMLKGL
           + Y+     +  + KR       I+R+  N            W L +DAAW    N  G GW++RD  G ++  G   I+ +  +  LE +A+ +GL
Subjt:  ---EAYL-----KTQSPKRLGSHASQIQRVAAN---------PGCWNLKSDAAWNDKLNRGGRGWVVRDSDGSLVFFGMHKIKKKWPVKVLEALAMLKGL

Query:  SEIASTCDRRAIPIEAESDSLEVINIL
          I     R   PI  ESDSLE I++L
Subjt:  SEIASTCDRRAIPIEAESDSLEVINIL

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.0e-1528.88Show/hide
Query:  NQLSKEELSRGVTIMWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIE---EAYLKTQSPKRL---GSHASQ----IQRVAANPGC---------WNLK
        ++  +EE  R + I W+IWE RNK           ++F  + S  ++I+   + Y+   + +     G  A++    I+R+  N G          W L 
Subjt:  NQLSKEELSRGVTIMWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIE---EAYLKTQSPKRL---GSHASQ----IQRVAANPGC---------WNLK

Query:  SDAAWNDKLNRGGRGWVVRDSDGSLVFFGMHKIKKKWPVKVLEALAMLKGLSEIASTCDR-----RAIPIEAESDSLEVINILAGETEDLTEVKSLTDQI
        +DAAW    N GG GW++RD  G ++      I+ +  +  LE +A+ +GL  I     R        PI  ESDSLE I++L  + +D TE+  L ++I
Subjt:  SDAAWNDKLNRGGRGWVVRDSDGSLVFFGMHKIKKKWPVKVLEALAMLKGLSEIASTCDR-----RAIPIEAESDSLEVINILAGETEDLTEVKSLTDQI

Query:  LALAANSFGMKFRHCNRLLNTDAHCVARLAVD
          +  +   +  RH +R  N  AH +AR A++
Subjt:  LALAANSFGMKFRHCNRLLNTDAHCVARLAVD

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134122.1e-1530.28Show/hide
Query:  NQLSKEELSRGVTIMWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIEEAYLKTQ-SPKRLGSHASQIQRVAANPGC---------WNLKSDAAWNDKL
        ++  +EE  R + I W+IWE RNK       P   ++  +I+  +  I  A   T    K        I+R+  N G          W L ++AAW    
Subjt:  NQLSKEELSRGVTIMWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIEEAYLKTQ-SPKRLGSHASQIQRVAANPGC---------WNLKSDAAWNDKL

Query:  NRGGRGWVVRDSDGSLVFFGMHKIKKKWPVKVLEALAMLKGLSEIASTCDRRAIPIEAESDSLEVINILAGETEDLTEVKSLTDQILALAANSFGMKFRH
        N GG GW++RD  G ++      I+ +  +  LE +A+ +GL  I     R   PI  ESDSLE I++L  + +D TE+  L ++I  +  +   +  RH
Subjt:  NRGGRGWVVRDSDGSLVFFGMHKIKKKWPVKVLEALAMLKGLSEIASTCDRRAIPIEAESDSLEVINILAGETEDLTEVKSLTDQILALAANSFGMKFRH

Query:  CNRLLNTDAHCVARLAVD
         +R  N  AH +AR A++
Subjt:  CNRLLNTDAHCVARLAVD

A0A6J1CQG0 uncharacterized protein LOC1110132163.5e-1833Show/hide
Query:  RKDWSTKDHWNWMENQLSKEELSRGVTIMWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIEEAYLKTQSPKRLGSHASQIQRVAANPG----------
        R  W+ KD WNW+ N LS EE++  + I W+IWE RN+  S FR  + D      E  L      ++ +   K  G+  SQ +R   N G          
Subjt:  RKDWSTKDHWNWMENQLSKEELSRGVTIMWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIEEAYLKTQSPKRLGSHASQIQRVAANPG----------

Query:  ------------CWNLKSDAAWNDKLNRGGRGWVVRDSDGSLVFFGMHKIKKKWPVKVLEALAMLKGLSEIASTCDRRAIPIEAESDSLEVINILAGETE
                    CW L +DA+W+++   GG GW++ D  G +V  G  KI++K  +  LE + +++GL  I     +   PI  ESDS+EVI ++  E  
Subjt:  ------------CWNLKSDAAWNDKLNRGGRGWVVRDSDGSLVFFGMHKIKKKWPVKVLEALAMLKGLSEIASTCDRRAIPIEAESDSLEVINILAGETE

Query:  DLT
        DLT
Subjt:  DLT

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X12.2e-2027.48Show/hide
Query:  SIHDKRKILEGSPWIYDKALMVFEEIKGNERYSRLQFRK-----------------------------------DWSTKDHWNWMENQLSKEELSRGVTI
        ++ DK KIL   PW +DK++++ EE + N  ++ L+FRK                                   +W+TK++W W+ ++  +EE  R + I
Subjt:  SIHDKRKILEGSPWIYDKALMVFEEIKGNERYSRLQFRK-----------------------------------DWSTKDHWNWMENQLSKEELSRGVTI

Query:  MWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIE---EAYL-----KTQSPKRLGSHASQIQRVAAN---------PGCWNLKSDAAWNDKLNRGGRGW
          +IWE RNK           ++F  + S  ++I+   + Y+     +  + KR       I+R+  N            W L +DAAW    N  G GW
Subjt:  MWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIE---EAYL-----KTQSPKRLGSHASQIQRVAAN---------PGCWNLKSDAAWNDKLNRGGRGW

Query:  VVRDSDGSLVFFGMHKIKKKWPVKVLEALAMLKGLSEIASTCDRRAIPIEAESDSLEVINIL
        ++RD  G ++  G   I+ +  +  LE +A+ +GL  I     R   PI  ESDSLE I++L
Subjt:  VVRDSDGSLVFFGMHKIKKKWPVKVLEALAMLKGLSEIASTCDRRAIPIEAESDSLEVINIL

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X25.1e-2531.28Show/hide
Query:  SIHDKRKILEGSPWIYDKALMVFEEIKGNERYSRLQFRKDWSTKDHWNWMENQLSKEELSRGVTIMWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIE
        ++ DK KIL   PW +DK++++ EE + N  ++ L+FR +W+TK++W W+ ++  +EE  R + I  +IWE RNK           ++F  + S  ++I+
Subjt:  SIHDKRKILEGSPWIYDKALMVFEEIKGNERYSRLQFRKDWSTKDHWNWMENQLSKEELSRGVTIMWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIE

Query:  ---EAYL-----KTQSPKRLGSHASQIQRVAAN---------PGCWNLKSDAAWNDKLNRGGRGWVVRDSDGSLVFFGMHKIKKKWPVKVLEALAMLKGL
           + Y+     +  + KR       I+R+  N            W L +DAAW    N  G GW++RD  G ++  G   I+ +  +  LE +A+ +GL
Subjt:  ---EAYL-----KTQSPKRLGSHASQIQRVAAN---------PGCWNLKSDAAWNDKLNRGGRGWVVRDSDGSLVFFGMHKIKKKWPVKVLEALAMLKGL

Query:  SEIASTCDRRAIPIEAESDSLEVINIL
          I     R   PI  ESDSLE I++L
Subjt:  SEIASTCDRRAIPIEAESDSLEVINIL

A0A6J1DSV1 uncharacterized protein LOC1110236089.6e-1628.88Show/hide
Query:  NQLSKEELSRGVTIMWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIE---EAYLKTQSPKRL---GSHASQ----IQRVAANPGC---------WNLK
        ++  +EE  R + I W+IWE RNK           ++F  + S  ++I+   + Y+   + +     G  A++    I+R+  N G          W L 
Subjt:  NQLSKEELSRGVTIMWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIE---EAYLKTQSPKRL---GSHASQ----IQRVAANPGC---------WNLK

Query:  SDAAWNDKLNRGGRGWVVRDSDGSLVFFGMHKIKKKWPVKVLEALAMLKGLSEIASTCDR-----RAIPIEAESDSLEVINILAGETEDLTEVKSLTDQI
        +DAAW    N GG GW++RD  G ++      I+ +  +  LE +A+ +GL  I     R        PI  ESDSLE I++L  + +D TE+  L ++I
Subjt:  SDAAWNDKLNRGGRGWVVRDSDGSLVFFGMHKIKKKWPVKVLEALAMLKGLSEIASTCDR-----RAIPIEAESDSLEVINILAGETEDLTEVKSLTDQI

Query:  LALAANSFGMKFRHCNRLLNTDAHCVARLAVD
          +  +   +  RH +R  N  AH +AR A++
Subjt:  LALAANSFGMKFRHCNRLLNTDAHCVARLAVD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein2.0e-0526.04Show/hide
Query:  IMWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIEEAYLKTQSPKRLGSHASQIQRVAANPGCW-NLKSDAAWNDKLNRGGRGWVVRDSDGSLVFFGMH
        ++W++W+ RN++    R  +A  +    E  L+E            +   + S   R    P  W    +DA WN    R G GWV+R+  G + + G  
Subjt:  IMWKIWEFRNKVESNFRIPSADNLFHSIESSLKEIEEAYLKTQSPKRLGSHASQIQRVAANPGCW-NLKSDAAWNDKLNRGGRGWVVRDSDGSLVFFGMH

Query:  KIKKKWPVKVLEALAMLKGLSEIASTCDRRAIPIEAESDSLEVINILAGETEDLTEVKSLTDQILALAANSFGMKFRHCNRLLNTDAHCVAR
         + K   V   E  AM   +  ++       I    ESDS  +I IL  + E    +K     +  L +    +KF    R  NT A  VAR
Subjt:  KIKKKWPVKVLEALAMLKGLSEIASTCDRRAIPIEAESDSLEVINILAGETEDLTEVKSLTDQILALAANSFGMKFRHCNRLLNTDAHCVAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGGCCTGGAATGGAAAACCAACAGAGGCAGGAAGTCAAGGAAAAAGCAGAGACCAACTCCATCCATGACAAGCGGAAAATCTTAGAGGGGAGCCCATGGATTTA
TGATAAAGCGCTCATGGTCTTCGAAGAAATCAAAGGAAATGAGAGATACTCTAGACTACAATTCAGGAAAGATTGGTCAACCAAGGATCATTGGAATTGGATGGAAAACC
AGTTGAGCAAAGAGGAACTATCTAGAGGAGTTACTATCATGTGGAAGATTTGGGAATTTCGCAACAAAGTAGAATCAAATTTCCGGATCCCATCAGCAGACAACCTCTTC
CACAGTATTGAATCAAGCTTAAAAGAGATTGAAGAAGCGTACCTCAAGACCCAATCGCCGAAGAGACTTGGGAGCCATGCGAGTCAGATTCAACGAGTTGCGGCTAATCC
GGGATGCTGGAACCTCAAATCTGACGCGGCCTGGAATGATAAACTGAACAGAGGAGGGCGTGGGTGGGTTGTTCGTGACTCGGACGGATCCCTTGTCTTCTTCGGAATGC
ACAAAATTAAGAAGAAATGGCCAGTCAAAGTGTTAGAAGCTTTGGCGATGTTGAAAGGTTTATCGGAAATTGCAAGTACCTGTGATAGGAGAGCAATTCCAATCGAGGCG
GAGTCTGATTCGCTGGAAGTCATCAACATTCTCGCCGGCGAAACAGAGGACCTCACCGAGGTGAAGTCTTTAACGGACCAAATCCTTGCGTTGGCTGCGAATTCCTTTGG
AATGAAGTTTCGCCATTGTAATAGACTTTTGAACACAGATGCGCACTGTGTTGCTAGGCTCGCCGTCGATCTCCCCTCCGGTAGTTTTTTTGTCGAGGGTGAGGGTTTTT
CGCGGGAAGATAATTGTGTTTTTTGGGAGCCCTGCTTCCCTTCGTGGTCTTTCCCTCTCTTTAATGAGGGCAGGCGTGTATTGGATGTTTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGGCCTGGAATGGAAAACCAACAGAGGCAGGAAGTCAAGGAAAAAGCAGAGACCAACTCCATCCATGACAAGCGGAAAATCTTAGAGGGGAGCCCATGGATTTA
TGATAAAGCGCTCATGGTCTTCGAAGAAATCAAAGGAAATGAGAGATACTCTAGACTACAATTCAGGAAAGATTGGTCAACCAAGGATCATTGGAATTGGATGGAAAACC
AGTTGAGCAAAGAGGAACTATCTAGAGGAGTTACTATCATGTGGAAGATTTGGGAATTTCGCAACAAAGTAGAATCAAATTTCCGGATCCCATCAGCAGACAACCTCTTC
CACAGTATTGAATCAAGCTTAAAAGAGATTGAAGAAGCGTACCTCAAGACCCAATCGCCGAAGAGACTTGGGAGCCATGCGAGTCAGATTCAACGAGTTGCGGCTAATCC
GGGATGCTGGAACCTCAAATCTGACGCGGCCTGGAATGATAAACTGAACAGAGGAGGGCGTGGGTGGGTTGTTCGTGACTCGGACGGATCCCTTGTCTTCTTCGGAATGC
ACAAAATTAAGAAGAAATGGCCAGTCAAAGTGTTAGAAGCTTTGGCGATGTTGAAAGGTTTATCGGAAATTGCAAGTACCTGTGATAGGAGAGCAATTCCAATCGAGGCG
GAGTCTGATTCGCTGGAAGTCATCAACATTCTCGCCGGCGAAACAGAGGACCTCACCGAGGTGAAGTCTTTAACGGACCAAATCCTTGCGTTGGCTGCGAATTCCTTTGG
AATGAAGTTTCGCCATTGTAATAGACTTTTGAACACAGATGCGCACTGTGTTGCTAGGCTCGCCGTCGATCTCCCCTCCGGTAGTTTTTTTGTCGAGGGTGAGGGTTTTT
CGCGGGAAGATAATTGTGTTTTTTGGGAGCCCTGCTTCCCTTCGTGGTCTTTCCCTCTCTTTAATGAGGGCAGGCGTGTATTGGATGTTTCCTAA
Protein sequenceShow/hide protein sequence
MEGPGMENQQRQEVKEKAETNSIHDKRKILEGSPWIYDKALMVFEEIKGNERYSRLQFRKDWSTKDHWNWMENQLSKEELSRGVTIMWKIWEFRNKVESNFRIPSADNLF
HSIESSLKEIEEAYLKTQSPKRLGSHASQIQRVAANPGCWNLKSDAAWNDKLNRGGRGWVVRDSDGSLVFFGMHKIKKKWPVKVLEALAMLKGLSEIASTCDRRAIPIEA
ESDSLEVINILAGETEDLTEVKSLTDQILALAANSFGMKFRHCNRLLNTDAHCVARLAVDLPSGSFFVEGEGFSREDNCVFWEPCFPSWSFPLFNEGRRVLDVS