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Lcy06g018120 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g018120
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr06:41661165..41662483
RNA-Seq ExpressionLcy06g018120
SyntenyLcy06g018120
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]2.6e-2045.71Show/hide
Query:  MADRIGNAVGVFEDVDSRNGFLFWRSSLRIRVQMDLSRPLRRGVRIYPDGPLSGLLIPFRYERLPELCSFCGLIGHVVRDCEQLLCSENGNNASHQYGEW
        MA R+GNA+G+FEDV+S      W S LR+RV+ D+ +PL RG+++  DGP+ G  IP +YERLP+    CG + H+++DC    C  +  + + QYG W
Subjt:  MADRIGNAVGVFEDVDSRNGFLFWRSSLRIRVQMDLSRPLRRGVRIYPDGPLSGLLIPFRYERLPELCSFCGLIGHVVRDCEQLLCSENGNNASHQYGEW

Query:  LRFFG
        LRF G
Subjt:  LRFFG

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]6.6e-2450.94Show/hide
Query:  MADRIGNAVGVFEDVDSRNGFLFWRSSLRIRVQMDLSRPLRRGVRIYPDGPLSGLLIPFRYERLPELCSFCGLIGHVVRDCE-QLLCSENGNNASHQYGE
        MA R+GNA+G F DVD       W +SLRIRV +D+++PLRRG++I  DGP+ G  IP +YERLP+ C FCG+IGH   DC+ + L +++ + A+ +YG 
Subjt:  MADRIGNAVGVFEDVDSRNGFLFWRSSLRIRVQMDLSRPLRRGVRIYPDGPLSGLLIPFRYERLPELCSFCGLIGHVVRDCE-QLLCSENGNNASHQYGE

Query:  WLRFFG
        WLRF G
Subjt:  WLRFFG

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.3e-1643.81Show/hide
Query:  MADRIGNAVGVFEDVDSRNGFLFWRSSLRIRVQMDLSRPLRRGVRIYPDGPLSGLLIPFRYERLPELCSFCGLIGHVVRDCEQLLCSENGNNASHQYGEW
        MA R+GNA+G FE+ D  +    W S+LR+RV +D+S+PLRRG+++  DGP+ G  IP +YERLP+ C  CGL               + +   HQYG W
Subjt:  MADRIGNAVGVFEDVDSRNGFLFWRSSLRIRVQMDLSRPLRRGVRIYPDGPLSGLLIPFRYERLPELCSFCGLIGHVVRDCEQLLCSENGNNASHQYGEW

Query:  LRFFG
        LR+ G
Subjt:  LRFFG

XP_028122006.1 uncharacterized protein LOC114319195 [Camellia sinensis]1.5e-1544.44Show/hide
Query:  IGNAVGVFEDVDSRNGFLFWRSSLRIRVQMDLSRPLRRGVRIYPDGPLSGLLIPFRYERLPELCSFCGLIGHVVRDCEQLLCSENGNNA-SHQYGEWLR
        +GNAVG F D+D  +G + W  ++RIRV +D+ +PLRRG+++        + + F+YERLP  C FCG +GH  R+C+  L S +G+   S QYG WLR
Subjt:  IGNAVGVFEDVDSRNGFLFWRSSLRIRVQMDLSRPLRRGVRIYPDGPLSGLLIPFRYERLPELCSFCGLIGHVVRDCEQLLCSENGNNA-SHQYGEWLR

XP_031111263.1 nucleolin 1-like isoform X2 [Ipomoea triloba]4.3e-1538.57Show/hide
Query:  MADRIGNAVGVFEDVDSRNGFLFWRSSLRIRVQMDLSRPLRRGVRIYPDGPLSGLLIPFRYERLPELCSFCGLIGHVVRDCEQLLCSENGNNASHQYGEW
        +A  IG+ +G F   D RN    W+S LR+R  +DL++PLRR V++  +G        F+YERLP  C  CGL+GH  R CE++L           YG W
Subjt:  MADRIGNAVGVFEDVDSRNGFLFWRSSLRIRVQMDLSRPLRRGVRIYPDGPLSGLLIPFRYERLPELCSFCGLIGHVVRDCEQLLCSENGNNASHQYGEW

Query:  LRFFGKGM--ILNNFVTREVGREADLETPQSQRLPIVVSP
        LR  G+    I + ++  E  R A ++TPQ Q    VV+P
Subjt:  LRFFGKGM--ILNNFVTREVGREADLETPQSQRLPIVVSP

TrEMBL top hitse value%identityAlignment
A0A2N9IIR5 Uncharacterized protein6.7e-1437.4Show/hide
Query:  MADRIGNAVGVFEDVDSRNGFLFWRSSLRIRVQMDLSRPLRRGVRIYPDGPLSGLLIPFRYERLPELCSFCGLIGHVVRDCEQLLCSEN-GNNASHQYGE
        +A+ IG+++G  E      GF    S +RIR+ +D S+PL RG RI   G   G  + F++ERLP  C +CG + H V+DC+  + S   G   SHQYG+
Subjt:  MADRIGNAVGVFEDVDSRNGFLFWRSSLRIRVQMDLSRPLRRGVRIYPDGPLSGLLIPFRYERLPELCSFCGLIGHVVRDCEQLLCSEN-GNNASHQYGE

Query:  WLR----FFGKGMILNNFVTREVGREADLET
        WLR    F GK  +++   +R      D +T
Subjt:  WLR----FFGKGMILNNFVTREVGREADLET

A0A6J1BSZ1 uncharacterized protein LOC1110054811.3e-2045.71Show/hide
Query:  MADRIGNAVGVFEDVDSRNGFLFWRSSLRIRVQMDLSRPLRRGVRIYPDGPLSGLLIPFRYERLPELCSFCGLIGHVVRDCEQLLCSENGNNASHQYGEW
        MA R+GNA+G+FEDV+S      W S LR+RV+ D+ +PL RG+++  DGP+ G  IP +YERLP+    CG + H+++DC    C  +  + + QYG W
Subjt:  MADRIGNAVGVFEDVDSRNGFLFWRSSLRIRVQMDLSRPLRRGVRIYPDGPLSGLLIPFRYERLPELCSFCGLIGHVVRDCEQLLCSENGNNASHQYGEW

Query:  LRFFG
        LRF G
Subjt:  LRFFG

A0A6J1DU55 uncharacterized protein LOC1110231353.2e-2450.94Show/hide
Query:  MADRIGNAVGVFEDVDSRNGFLFWRSSLRIRVQMDLSRPLRRGVRIYPDGPLSGLLIPFRYERLPELCSFCGLIGHVVRDCE-QLLCSENGNNASHQYGE
        MA R+GNA+G F DVD       W +SLRIRV +D+++PLRRG++I  DGP+ G  IP +YERLP+ C FCG+IGH   DC+ + L +++ + A+ +YG 
Subjt:  MADRIGNAVGVFEDVDSRNGFLFWRSSLRIRVQMDLSRPLRRGVRIYPDGPLSGLLIPFRYERLPELCSFCGLIGHVVRDCE-QLLCSENGNNASHQYGE

Query:  WLRFFG
        WLRF G
Subjt:  WLRFFG

A0A6J1DX30 uncharacterized protein LOC1110248746.4e-1743.81Show/hide
Query:  MADRIGNAVGVFEDVDSRNGFLFWRSSLRIRVQMDLSRPLRRGVRIYPDGPLSGLLIPFRYERLPELCSFCGLIGHVVRDCEQLLCSENGNNASHQYGEW
        MA R+GNA+G FE+ D  +    W S+LR+RV +D+S+PLRRG+++  DGP+ G  IP +YERLP+ C  CGL               + +   HQYG W
Subjt:  MADRIGNAVGVFEDVDSRNGFLFWRSSLRIRVQMDLSRPLRRGVRIYPDGPLSGLLIPFRYERLPELCSFCGLIGHVVRDCEQLLCSENGNNASHQYGEW

Query:  LRFFG
        LR+ G
Subjt:  LRFFG

A0A6P6S3G2 uncharacterized protein LOC1136872931.8e-1442.57Show/hide
Query:  ADRIGNAVGVFEDVDSRNGFLFWRSSLRIRVQMDLSRPLRRGVRIYPDGPLSGLLIPFRYERLPELCSFCGLIGHVVRDCEQLLCSENGNNASHQYGEWL
        A+ +GN +GV+E  + R     W   LRIRV++ L  PL+R + ++ +G +  +L  F+YERLP LC +CG IGH  RDCE  L +   +    QYG WL
Subjt:  ADRIGNAVGVFEDVDSRNGFLFWRSSLRIRVQMDLSRPLRRGVRIYPDGPLSGLLIPFRYERLPELCSFCGLIGHVVRDCEQLLCSENGNNASHQYGEWL

Query:  R
        R
Subjt:  R

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATCGGATCGGAAATGCGGTGGGTGTCTTTGAGGATGTAGATTCTCGGAATGGATTTCTTTTTTGGAGATCTAGTTTGCGAATCAGGGTTCAGATGGATCTTTC
ACGTCCTCTTCGCCGCGGTGTTCGGATTTATCCGGATGGTCCTTTGAGTGGGTTATTGATTCCTTTTCGGTATGAACGACTGCCGGAATTATGCTCATTCTGTGGTCTTA
TTGGCCATGTTGTTCGGGATTGTGAGCAGCTCCTTTGCTCTGAAAACGGAAATAATGCCTCTCATCAATATGGGGAATGGTTGAGATTTTTTGGGAAAGGGATGATTCTG
AATAATTTTGTTACGAGGGAGGTGGGACGTGAAGCTGATTTAGAGACTCCACAGAGCCAGAGGTTGCCCATTGTTGTATCCCCCGTTCCAAAGCGCCCTCTGTTTGGGGA
AGCTATTGCTCATCAAAATCAGGGGGGTATTCACATTGCTGAACCGTCTGAGGACAGGCCGATCAAAAGCCAAGCTTCAATTCCGCCGGCGCATTATTCCTTATCGGGCG
ACCCGTCTGCTTCAACTAAGGGGAAAAGTAAAATTTCTGATTTTGTTTCCATGTTTAAGGGAGTGAATAAGGTGAACGTTACAGATGCTGGTGGGCCTAGCTCTTTGAAT
CCGTTGGGCCTTGATGCTGTTTCTGGGTTGGAAATCAATGAGACTTCAATGGAAGATTGTAACCGGCGGTTGCAAAAATCTTTAATGTCAATTTTTCAAACGGATTCTTC
ATTGAATTTGGACCAGGATGCTTGCAAAGACAAAACGGTTGAAGATAGTGATGAAATGGAAAGTGATCCTGAGATGGATGAAGACTTTGGGCTGCTGGATGAGGGAAAGG
AAGGTTCGGTTGAGGCCCATAATGAGGTAGTTGGGCCAGAAATTACCGTGAACAACTTTAAGGCCCCGTCTGATTGGGCCGGAGGTGTGTATGGTCTGGACGAAGGGAGC
GAAGATTCTGGCCTCTTGAATTCTTCCCAGCTCTCTTTTTCTGCAGGTCCAGGACGTAAATGGAAGAAACGTGCACGTGCTTGCTTTATCCCTGCAGGCATGAACGTGGT
TGATTTGGAGGATACTCAAAAGAGGAAGGATGGACCAATTTTGTTGTCTCCTGGGAATATTAAACGGCCCAAAATAGGTGATTTTGCTTGTATGATGGAGGGATCTGTTG
AGCAGACCCGCCAAGAGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGATCGGATCGGAAATGCGGTGGGTGTCTTTGAGGATGTAGATTCTCGGAATGGATTTCTTTTTTGGAGATCTAGTTTGCGAATCAGGGTTCAGATGGATCTTTC
ACGTCCTCTTCGCCGCGGTGTTCGGATTTATCCGGATGGTCCTTTGAGTGGGTTATTGATTCCTTTTCGGTATGAACGACTGCCGGAATTATGCTCATTCTGTGGTCTTA
TTGGCCATGTTGTTCGGGATTGTGAGCAGCTCCTTTGCTCTGAAAACGGAAATAATGCCTCTCATCAATATGGGGAATGGTTGAGATTTTTTGGGAAAGGGATGATTCTG
AATAATTTTGTTACGAGGGAGGTGGGACGTGAAGCTGATTTAGAGACTCCACAGAGCCAGAGGTTGCCCATTGTTGTATCCCCCGTTCCAAAGCGCCCTCTGTTTGGGGA
AGCTATTGCTCATCAAAATCAGGGGGGTATTCACATTGCTGAACCGTCTGAGGACAGGCCGATCAAAAGCCAAGCTTCAATTCCGCCGGCGCATTATTCCTTATCGGGCG
ACCCGTCTGCTTCAACTAAGGGGAAAAGTAAAATTTCTGATTTTGTTTCCATGTTTAAGGGAGTGAATAAGGTGAACGTTACAGATGCTGGTGGGCCTAGCTCTTTGAAT
CCGTTGGGCCTTGATGCTGTTTCTGGGTTGGAAATCAATGAGACTTCAATGGAAGATTGTAACCGGCGGTTGCAAAAATCTTTAATGTCAATTTTTCAAACGGATTCTTC
ATTGAATTTGGACCAGGATGCTTGCAAAGACAAAACGGTTGAAGATAGTGATGAAATGGAAAGTGATCCTGAGATGGATGAAGACTTTGGGCTGCTGGATGAGGGAAAGG
AAGGTTCGGTTGAGGCCCATAATGAGGTAGTTGGGCCAGAAATTACCGTGAACAACTTTAAGGCCCCGTCTGATTGGGCCGGAGGTGTGTATGGTCTGGACGAAGGGAGC
GAAGATTCTGGCCTCTTGAATTCTTCCCAGCTCTCTTTTTCTGCAGGTCCAGGACGTAAATGGAAGAAACGTGCACGTGCTTGCTTTATCCCTGCAGGCATGAACGTGGT
TGATTTGGAGGATACTCAAAAGAGGAAGGATGGACCAATTTTGTTGTCTCCTGGGAATATTAAACGGCCCAAAATAGGTGATTTTGCTTGTATGATGGAGGGATCTGTTG
AGCAGACCCGCCAAGAGCCATGA
Protein sequenceShow/hide protein sequence
MADRIGNAVGVFEDVDSRNGFLFWRSSLRIRVQMDLSRPLRRGVRIYPDGPLSGLLIPFRYERLPELCSFCGLIGHVVRDCEQLLCSENGNNASHQYGEWLRFFGKGMIL
NNFVTREVGREADLETPQSQRLPIVVSPVPKRPLFGEAIAHQNQGGIHIAEPSEDRPIKSQASIPPAHYSLSGDPSASTKGKSKISDFVSMFKGVNKVNVTDAGGPSSLN
PLGLDAVSGLEINETSMEDCNRRLQKSLMSIFQTDSSLNLDQDACKDKTVEDSDEMESDPEMDEDFGLLDEGKEGSVEAHNEVVGPEITVNNFKAPSDWAGGVYGLDEGS
EDSGLLNSSQLSFSAGPGRKWKKRARACFIPAGMNVVDLEDTQKRKDGPILLSPGNIKRPKIGDFACMMEGSVEQTRQEP