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Lcy06g018550 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g018550
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionPolynucleotidyl transferase, ribonuclease H-like superfamily protein
Genome locationChr06:42725666..42728422
RNA-Seq ExpressionLcy06g018550
SyntenyLcy06g018550
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH00303.1 Ribonuclease H-like superfamily protein [Prunus dulcis]2.4e-0432Show/hide
Query:  LSCDAAWLNDVRVGSLDWVLQNPVGDVIGVGCESVMGLLGVVMLEMQTIRVGLLAIGEMGLPRLIVESDCLAVINLLNSEEENFTLVCAVAMEVHKFSSR
        L+CD AW+     G + WVL++ +G  I  G    M     +M E + +R  L    E+G  ++ VESD L++I +LN E+     +  +  +VH  S R
Subjt:  LSCDAAWLNDVRVGSLDWVLQNPVGDVIGVGCESVMGLLGVVMLEMQTIRVGLLAIGEMGLPRLIVESDCLAVINLLNSEEENFTLVCAVAMEVHKFSSR
CAB4279811.1 unnamed protein product [Prunus armeniaca]6.3e-0536.25Show/hide
Query:  LSCDAAWLNDVRVGSLDWVLQNPVGDVIGVGCESVMGLLGVVMLEMQTIRVGLLAIGEMGLPRLIVESDCLAVINLLNSE
        ++CDAAW++  ++G + WV+++  G ++  GC+  M     + +E + IR  LLA  + GL +L VESD L +I +L  E
Subjt:  LSCDAAWLNDVRVGSLDWVLQNPVGDVIGVGCESVMGLLGVVMLEMQTIRVGLLAIGEMGLPRLIVESDCLAVINLLNSE
XP_010480439.1 PREDICTED: uncharacterized protein LOC104759181 [Camelina sativa]2.2e-0535.9Show/hide
Query:  DAAWLNDVRVGSLDWVLQNPVGDVIGVGCESVMGLLGVVMLEMQTIRVGLLAIGEMGLPRLIVESDCLAVINLLNSEE
        D AW  +   G   WVL++  GDV+ +G +++      + +EM+ +R  + ++  +G  R+I ESD L ++NLLNSEE
Subjt:  DAAWLNDVRVGSLDWVLQNPVGDVIGVGCESVMGLLGVVMLEMQTIRVGLLAIGEMGLPRLIVESDCLAVINLLNSEE
XP_010501661.1 PREDICTED: uncharacterized protein LOC104778957 [Camelina sativa]5.4e-0433.33Show/hide
Query:  DAAWLNDVRVGSLDWVLQNPVGDVIGVGCESVMGLLGVVMLEMQTIRVGLLAIGEMGLPRLIVESDCLAVINLLNSEE
        D  W     +    WVL+N  GD + VG +++   + V+ +E++ +R  + ++  +   R+I ESD L ++NLLNSEE
Subjt:  DAAWLNDVRVGSLDWVLQNPVGDVIGVGCESVMGLLGVVMLEMQTIRVGLLAIGEMGLPRLIVESDCLAVINLLNSEE
XP_022148737.1 uncharacterized protein LOC111017329 [Momordica charantia]6.3e-0527.88Show/hide
Query:  NTWSLSCDAAWLNDVRVGSLDWVLQNPVGDVIGVGCESVMGLLGVVMLEMQTIRVGLLAIGEMGLPRLIVESDCLAVINLLNSEEENFTLVCAVAMEVHK
        N W L+ DAAW  +  VG L W+++N   ++   G +++     +  LE+  I +G+ A+       LI+ES+ L  I+L+   ++N T +  +  ++  
Subjt:  NTWSLSCDAAWLNDVRVGSLDWVLQNPVGDVIGVGCESVMGLLGVVMLEMQTIRVGLLAIGEMGLPRLIVESDCLAVINLLNSEEENFTLVCAVAMEVHK

Query:  FSSR
        F  R
Subjt:  FSSR
TrEMBL top hitse value%identityAlignment
A0A4Y1R838 Ribonuclease H-like superfamily protein1.2e-0432Show/hide
Query:  LSCDAAWLNDVRVGSLDWVLQNPVGDVIGVGCESVMGLLGVVMLEMQTIRVGLLAIGEMGLPRLIVESDCLAVINLLNSEEENFTLVCAVAMEVHKFSSR
        L+CD AW+     G + WVL++ +G  I  G    M     +M E + +R  L    E+G  ++ VESD L++I +LN E+     +  +  +VH  S R
Subjt:  LSCDAAWLNDVRVGSLDWVLQNPVGDVIGVGCESVMGLLGVVMLEMQTIRVGLLAIGEMGLPRLIVESDCLAVINLLNSEEENFTLVCAVAMEVHKFSSR
A0A6J1D5W1 uncharacterized protein LOC1110173293.1e-0527.88Show/hide
Query:  NTWSLSCDAAWLNDVRVGSLDWVLQNPVGDVIGVGCESVMGLLGVVMLEMQTIRVGLLAIGEMGLPRLIVESDCLAVINLLNSEEENFTLVCAVAMEVHK
        N W L+ DAAW  +  VG L W+++N   ++   G +++     +  LE+  I +G+ A+       LI+ES+ L  I+L+   ++N T +  +  ++  
Subjt:  NTWSLSCDAAWLNDVRVGSLDWVLQNPVGDVIGVGCESVMGLLGVVMLEMQTIRVGLLAIGEMGLPRLIVESDCLAVINLLNSEEENFTLVCAVAMEVHK

Query:  FSSR
        F  R
Subjt:  FSSR
A0A6J5UV01 Reverse transcriptase domain-containing protein3.1e-0536.25Show/hide
Query:  LSCDAAWLNDVRVGSLDWVLQNPVGDVIGVGCESVMGLLGVVMLEMQTIRVGLLAIGEMGLPRLIVESDCLAVINLLNSE
        ++CDAAW++  ++G + WV+++  G ++  GC+  M     + +E + IR  LLA  + GL +L VESD L +I +L  E
Subjt:  LSCDAAWLNDVRVGSLDWVLQNPVGDVIGVGCESVMGLLGVVMLEMQTIRVGLLAIGEMGLPRLIVESDCLAVINLLNSE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.6e-0634.18Show/hide
Query:  DAAW-LNDVRVGSLDWVLQNPVGDVIGVGCESVMGLLGVVMLEMQTIRVGLLAIGEMGLPRLIVESDCLAVINLLNSEE
        DA W L + R G + W+L+N  G V+ +G  ++     V+  E++ +R  +L +      R+I ESD  A++NLLNS++
Subjt:  DAAW-LNDVRVGSLDWVLQNPVGDVIGVGCESVMGLLGVVMLEMQTIRVGLLAIGEMGLPRLIVESDCLAVINLLNSEE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTTGAACATATTTTGGCCATACCCATTAAGTGGTCAAAGAGAGGACGATGAGATATATTGGACGTCCAATGATAAGGTACGTTTTTCTGTGAAAAATGCT
TATGCACTTGGGGTGAGTTTGGTCAAGGGTGTGTCTGGTGCATTGTCCTCCACAAATAAGCTGCTTGGATTCCCCCTGGTGAATACGTGGTCTCTTAGTTGTGAT
GCAGCTTGGCTAAATGATGTAAGGGTGGGGAGTTTGGACTGGGTGCTGCAGAATCCTGTTGGAGATGTGATTGGGGTAGGTTGTGAATCGGTCATGGGGCTCCTC
GGGGTGGTTATGTTGGAAATGCAGACAATTCGGGTTGGATTGTTGGCTATTGGTGAGATGGGGCTTCCCCGATTGATTGTGGAGTCAGATTGTTTGGCAGTTATA
AATCTTTTGAATAGTGAGGAGGAGAACTTCACCTTAGTTTGTGCAGTTGCTATGGAGGTGCATAAGTTTTCTTCTCGCTTGGTGGGGACATAG
mRNA sequenceShow/hide mRNA sequence
ATGATGTTGAACATATTTTGGCCATACCCATTAAGTGGTCAAAGAGAGGACGATGAGATATATTGGACGTCCAATGATAAGGTACGTTTTTCTGTGAAAAATGCT
TATGCACTTGGGGTGAGTTTGGTCAAGGGTGTGTCTGGTGCATTGTCCTCCACAAATAAGCTGCTTGGATTCCCCCTGGTGAATACGTGGTCTCTTAGTTGTGAT
GCAGCTTGGCTAAATGATGTAAGGGTGGGGAGTTTGGACTGGGTGCTGCAGAATCCTGTTGGAGATGTGATTGGGGTAGGTTGTGAATCGGTCATGGGGCTCCTC
GGGGTGGTTATGTTGGAAATGCAGACAATTCGGGTTGGATTGTTGGCTATTGGTGAGATGGGGCTTCCCCGATTGATTGTGGAGTCAGATTGTTTGGCAGTTATA
AATCTTTTGAATAGTGAGGAGGAGAACTTCACCTTAGTTTGTGCAGTTGCTATGGAGGTGCATAAGTTTTCTTCTCGCTTGGTGGGGACATAG
Protein sequenceShow/hide protein sequence
MMLNIFWPYPLSGQREDDEIYWTSNDKVRFSVKNAYALGVSLVKGVSGALSSTNKLLGFPLVNTWSLSCDAAWLNDVRVGSLDWVLQNPVGDVIGVGCESVMGLL
GVVMLEMQTIRVGLLAIGEMGLPRLIVESDCLAVINLLNSEEENFTLVCAVAMEVHKFSSRLVGT