CuGenDBv2

Gene ID	Lcy06g019210
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DExH-box ATP-dependent RNA helicase DExH1 isoform X1
Genome location	Chr06:43674943..43688349
RNA-Seq Expression	Lcy06g019210
Synteny	Lcy06g019210
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0003724 - RNA helicase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016787 - hydrolase activity (molecular function)
InterPro domains	IPR026736 - Protein virilizer

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008442925.2 PREDICTED: DExH-box ATP-dependent RNA helicase DExH1 isoform X1 [Cucumis melo]

4.7e-59

84.97

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Query:  RFHSLYKLMSLRTFVSSHSLLYKHPFLAPQLSVLWPFISTFAMSYRPNYQGGRLGGSSGGGRGGGRRGGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKG
        RFHS YKLMSLRTFV ++SLLYK+PFL P+LSVL P ISTFAMSYRPNYQGGR G SSGGGRGGGRR GGGG    GGGGRGEQRWWDPVWRAERLRQK 
Subjt:  RFHSLYKLMSLRTFVSSHSLLYKHPFLAPQLSVLWPFISTFAMSYRPNYQGGRLGGSSGGGRGGGRRGGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKG

Query:  AEMEVLNENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQQGLYLYV
        AEMEVLNE+EWWTKMDQMKRGGEQEMIIKR+YSRSDQEILSDMA++QGLY +V
Subjt:  AEMEVLNENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQQGLYLYV

XP_022151380.1 DExH-box ATP-dependent RNA helicase DExH1 isoform X1 [Momordica charantia]

7.5e-57

89.04

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Query:  MSLRTF-VSSHSLLYKHPFLAPQLSVLWPFISTFAMSYRPNYQGGRLGGSSGGGRGGGRR-GGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKGAEMEVL
        MSLR F  SSHSLL K PFLAP+LSVL PFISTFAMS+RPNYQGGR GGSSGGGRGG RR GGGGGGGGRGGGGRGEQRWWDPVWRAERLRQK AEMEVL
Subjt:  MSLRTF-VSSHSLLYKHPFLAPQLSVLWPFISTFAMSYRPNYQGGRLGGSSGGGRGGGRR-GGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKGAEMEVL

Query:  NENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQQGLYLY
        NENEWWTKMDQMKRGGEQEMIIKRN+SRSDQEILSDMA+QQGLY +
Subjt:  NENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQQGLYLY

XP_022151381.1 DExH-box ATP-dependent RNA helicase DExH1 isoform X2 [Momordica charantia]

7.5e-57

89.04

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Query:  MSLRTF-VSSHSLLYKHPFLAPQLSVLWPFISTFAMSYRPNYQGGRLGGSSGGGRGGGRR-GGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKGAEMEVL
        MSLR F  SSHSLL K PFLAP+LSVL PFISTFAMS+RPNYQGGR GGSSGGGRGG RR GGGGGGGGRGGGGRGEQRWWDPVWRAERLRQK AEMEVL
Subjt:  MSLRTF-VSSHSLLYKHPFLAPQLSVLWPFISTFAMSYRPNYQGGRLGGSSGGGRGGGRR-GGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKGAEMEVL

Query:  NENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQQGLYLY
        NENEWWTKMDQMKRGGEQEMIIKRN+SRSDQEILSDMA+QQGLY +
Subjt:  NENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQQGLYLY

XP_022151382.1 DExH-box ATP-dependent RNA helicase DExH1 isoform X3 [Momordica charantia]

7.5e-57

89.04

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Query:  MSLRTF-VSSHSLLYKHPFLAPQLSVLWPFISTFAMSYRPNYQGGRLGGSSGGGRGGGRR-GGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKGAEMEVL
        MSLR F  SSHSLL K PFLAP+LSVL PFISTFAMS+RPNYQGGR GGSSGGGRGG RR GGGGGGGGRGGGGRGEQRWWDPVWRAERLRQK AEMEVL
Subjt:  MSLRTF-VSSHSLLYKHPFLAPQLSVLWPFISTFAMSYRPNYQGGRLGGSSGGGRGGGRR-GGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKGAEMEVL

Query:  NENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQQGLYLY
        NENEWWTKMDQMKRGGEQEMIIKRN+SRSDQEILSDMA+QQGLY +
Subjt:  NENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQQGLYLY

XP_038905170.1 DExH-box ATP-dependent RNA helicase DExH1 isoform X1 [Benincasa hispida]

1.1e-60

91.03

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Query:  MSLRTFVSSHSLLYKHPFLAPQLSVLWPFISTFAMSYRPNYQGGRLGGSSGGGRGGGRRGGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKGAEMEVLNE
        MSLRTFVS+HSLL KHP LAP+LSVL PFISTFAMSYRPNYQGGR G SSGGGRGGGRRGGGGGGGGRGGGGRGEQRWWDPVWRAERLRQK AEMEVLNE
Subjt:  MSLRTFVSSHSLLYKHPFLAPQLSVLWPFISTFAMSYRPNYQGGRLGGSSGGGRGGGRRGGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKGAEMEVLNE

Query:  NEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQQGLYLYV
        +EWWTKMDQMKRGGEQEMIIK +YSRSDQEILSDMAYQQGLY +V
Subjt:  NEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQQGLYLYV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LBL1 Uncharacterized protein

1.2e-55

85.62

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Query:  MSLRTFVSSHSLLYKHPFLAPQLSVLWPFISTFAMSYRPNYQGGRLGGSSGGGRGGGRRGGGGGGGGR-GGGGRGEQRWWDPVWRAERLRQKGAEMEVLN
        MSLRTF  +HSLL K+PFL P+LSVL P  STFAMSYRPNYQGGR G SSGGGRGGGRR G GGGGGR GGGGRGEQRWWDPVWRAERLRQK AEMEVLN
Subjt:  MSLRTFVSSHSLLYKHPFLAPQLSVLWPFISTFAMSYRPNYQGGRLGGSSGGGRGGGRRGGGGGGGGR-GGGGRGEQRWWDPVWRAERLRQKGAEMEVLN

Query:  ENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQQGLYLYV
        E+EWWTKMDQMKRGGEQEMIIKR+YSRSDQEILSDMA+QQGLY +V
Subjt:  ENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQQGLYLYV

A0A1S3B6D6 DExH-box ATP-dependent RNA helicase DExH1 isoform X1

2.3e-59

84.97

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Query:  RFHSLYKLMSLRTFVSSHSLLYKHPFLAPQLSVLWPFISTFAMSYRPNYQGGRLGGSSGGGRGGGRRGGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKG
        RFHS YKLMSLRTFV ++SLLYK+PFL P+LSVL P ISTFAMSYRPNYQGGR G SSGGGRGGGRR GGGG    GGGGRGEQRWWDPVWRAERLRQK 
Subjt:  RFHSLYKLMSLRTFVSSHSLLYKHPFLAPQLSVLWPFISTFAMSYRPNYQGGRLGGSSGGGRGGGRRGGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKG

Query:  AEMEVLNENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQQGLYLYV
        AEMEVLNE+EWWTKMDQMKRGGEQEMIIKR+YSRSDQEILSDMA++QGLY +V
Subjt:  AEMEVLNENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQQGLYLYV

A0A6J1DB04 DExH-box ATP-dependent RNA helicase DExH1 isoform X1

3.6e-57

89.04

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Query:  MSLRTF-VSSHSLLYKHPFLAPQLSVLWPFISTFAMSYRPNYQGGRLGGSSGGGRGGGRR-GGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKGAEMEVL
        MSLR F  SSHSLL K PFLAP+LSVL PFISTFAMS+RPNYQGGR GGSSGGGRGG RR GGGGGGGGRGGGGRGEQRWWDPVWRAERLRQK AEMEVL
Subjt:  MSLRTF-VSSHSLLYKHPFLAPQLSVLWPFISTFAMSYRPNYQGGRLGGSSGGGRGGGRR-GGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKGAEMEVL

Query:  NENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQQGLYLY
        NENEWWTKMDQMKRGGEQEMIIKRN+SRSDQEILSDMA+QQGLY +
Subjt:  NENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQQGLYLY

A0A6J1DDC1 DExH-box ATP-dependent RNA helicase DExH1 isoform X3

3.6e-57

89.04

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Query:  MSLRTF-VSSHSLLYKHPFLAPQLSVLWPFISTFAMSYRPNYQGGRLGGSSGGGRGGGRR-GGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKGAEMEVL
        MSLR F  SSHSLL K PFLAP+LSVL PFISTFAMS+RPNYQGGR GGSSGGGRGG RR GGGGGGGGRGGGGRGEQRWWDPVWRAERLRQK AEMEVL
Subjt:  MSLRTF-VSSHSLLYKHPFLAPQLSVLWPFISTFAMSYRPNYQGGRLGGSSGGGRGGGRR-GGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKGAEMEVL

Query:  NENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQQGLYLY
        NENEWWTKMDQMKRGGEQEMIIKRN+SRSDQEILSDMA+QQGLY +
Subjt:  NENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQQGLYLY

A0A6J1DEH1 DExH-box ATP-dependent RNA helicase DExH1 isoform X2

3.6e-57

89.04

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Query:  MSLRTF-VSSHSLLYKHPFLAPQLSVLWPFISTFAMSYRPNYQGGRLGGSSGGGRGGGRR-GGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKGAEMEVL
        MSLR F  SSHSLL K PFLAP+LSVL PFISTFAMS+RPNYQGGR GGSSGGGRGG RR GGGGGGGGRGGGGRGEQRWWDPVWRAERLRQK AEMEVL
Subjt:  MSLRTF-VSSHSLLYKHPFLAPQLSVLWPFISTFAMSYRPNYQGGRLGGSSGGGRGGGRR-GGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKGAEMEVL

Query:  NENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQQGLYLY
        NENEWWTKMDQMKRGGEQEMIIKRN+SRSDQEILSDMA+QQGLY +
Subjt:  NENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQQGLYLY

SwissProt top hits

e value

%identity

Alignment

F4ILR7 DExH-box ATP-dependent RNA helicase DExH1

7.3e-31

72.64

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Query:  PNYQGGRLGGSSGGGRGGGRRGGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKGAEMEVLNENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQ
        PN QGGR GG    GR GGR   GGGG G GGGGRGEQRWWDPVWRAERLRQ+ AEMEVL+ENEWW K++Q K GGEQEM+IKRN+SR DQ+ LSDMA Q
Subjt:  PNYQGGRLGGSSGGGRGGGRRGGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKGAEMEVLNENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQ

Query:  QGLYLY
         GLY +
Subjt:  QGLYLY

F4J8G7 Protein virilizer homolog

2.5e-23

71.83

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Query:  VLFAEPVVITACEFIEQNASSTSQSVALAGATLPPSFAVEVFVQCEGETRFRRLCQPFLYSHSSSNVLEVE
        V+FAEPV+ITACEF+EQNASS+SQ+V+L GAT PPSFA+EVFV+CEGE++F+RLC PFLY+ S+   LEVE
Subjt:  VLFAEPVVITACEFIEQNASSTSQSVALAGATLPPSFAVEVFVQCEGETRFRRLCQPFLYSHSSSNVLEVE

Arabidopsis top hits

e value

%identity

Alignment

AT2G35920.1 RNA helicase family protein

5.2e-32

72.64

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Query:  PNYQGGRLGGSSGGGRGGGRRGGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKGAEMEVLNENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQ
        PN QGGR GG    GR GGR   GGGG G GGGGRGEQRWWDPVWRAERLRQ+ AEMEVL+ENEWW K++Q K GGEQEM+IKRN+SR DQ+ LSDMA Q
Subjt:  PNYQGGRLGGSSGGGRGGGRRGGGGGGGGRGGGGRGEQRWWDPVWRAERLRQKGAEMEVLNENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQ

Query:  QGLYLY
         GLY +
Subjt:  QGLYLY

AT3G05680.1 embryo defective 2016

1.8e-24

71.83

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Query:  VLFAEPVVITACEFIEQNASSTSQSVALAGATLPPSFAVEVFVQCEGETRFRRLCQPFLYSHSSSNVLEVE
        V+FAEPV+ITACEF+EQNASS+SQ+V+L GAT PPSFA+EVFV+CEGE++F+RLC PFLY+ S+   LEVE
Subjt:  VLFAEPVVITACEFIEQNASSTSQSVALAGATLPPSFAVEVFVQCEGETRFRRLCQPFLYSHSSSNVLEVE

AT3G05680.2 embryo defective 2016

1.8e-24

71.83

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Query:  VLFAEPVVITACEFIEQNASSTSQSVALAGATLPPSFAVEVFVQCEGETRFRRLCQPFLYSHSSSNVLEVE
        V+FAEPV+ITACEF+EQNASS+SQ+V+L GAT PPSFA+EVFV+CEGE++F+RLC PFLY+ S+   LEVE
Subjt:  VLFAEPVVITACEFIEQNASSTSQSVALAGATLPPSFAVEVFVQCEGETRFRRLCQPFLYSHSSSNVLEVE

Sequences

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CDS sequence

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ATGGGGTCGAGAGAGGACTGGCGGCCGAAGCTGAAGCGGAGATTGTTCCGACATGGGTCGGCCGGAACCCTACGTCCTCTTCGCCCAGACCTTCGCTCACCCCCA
GCTCGACGAGTATTATTTGCGGAACCAGTCGTTATTACTGCGTGCGAGTTCATTGAACAGAATGCTTCGTCTACCTCTCAATCAGTTGCACTCGCTGGTGCTACC
TTGCCCCCTTCATTTGCCGTGGAAGTGTTTGTGCAATGCGAGGGAGAGACAAGATTTAGGCGCCTCTGTCAGCCTTTTCTATATTCTCATTCATCATCGAATGTT
CTGGAAGTCGAGACCGGGGAACCATCTCAAATACGATGTCCTTGCAAAAATGGCGATGTTCCGAACCGGCAACCGCTCGCAGCGCCACGTACTGCGATCGCCGTA
GTGCGATTCCACTCGCTTTATAAATTGATGTCCCTCCGAACCTTCGTCTCCAGTCACTCTCTACTCTACAAGCACCCATTTCTCGCGCCTCAGCTCTCTGTACTT
TGGCCATTCATTTCAACATTCGCAATGTCATATCGGCCCAACTATCAAGGTGGCCGTCTTGGCGGTTCCTCTGGAGGAGGACGCGGCGGTGGCCGACGCGGTGGA
GGCGGAGGCGGAGGAGGTAGAGGTGGTGGAGGCAGAGGCGAGCAACGTTGGTGGGATCCAGTCTGGCGCGCCGAGCGTCTGCGACAAAAGGGTGCTGAGATGGAG
GTTCTTAATGAAAATGAATGGTGGACTAAGATGGACCAGATGAAAAGAGGAGGGGAACAAGAGATGATAATTAAGCGTAATTATAGTCGAAGTGATCAAGAAATC
CTTTCTGATATGGCTTATCAACAGGGTCTTTACTTGTACGTTTCTACTGCCATTTTTAACAATATCAAATATTAG

mRNA sequence

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Protein sequence

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MGSREDWRPKLKRRLFRHGSAGTLRPLRPDLRSPPARRVLFAEPVVITACEFIEQNASSTSQSVALAGATLPPSFAVEVFVQCEGETRFRRLCQPFLYSHSSSNV
LEVETGEPSQIRCPCKNGDVPNRQPLAAPRTAIAVVRFHSLYKLMSLRTFVSSHSLLYKHPFLAPQLSVLWPFISTFAMSYRPNYQGGRLGGSSGGGRGGGRRGG
GGGGGGRGGGGRGEQRWWDPVWRAERLRQKGAEMEVLNENEWWTKMDQMKRGGEQEMIIKRNYSRSDQEILSDMAYQQGLYLYVSTAIFNNIKY

Lcy06g019210 (gene) of Sponge gourd (P93075) v1 genome