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Lcy06g019640 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g019640
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationChr06:44287453..44287905
RNA-Seq ExpressionLcy06g019640
SyntenyLcy06g019640
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]8.3e-0934.19Show/hide
Query:  SYQSNARASRGE---NHSSQAWSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEAD
        S Q++    RG    N     WS P T+CWKLN DASW+     G +GWI+ D  G  + AG  +I+++  +  LE   ++ GL+ +     +P+ +E+D
Subjt:  SYQSNARASRGE---NHSSQAWSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEAD

Query:  SDCLELVKCMNDVDDDL
        S  +E+++ M   D DL
Subjt:  SDCLELVKCMNDVDDDL

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]4.1e-0835.96Show/hide
Query:  RGENHSSQAWSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEADS
        R E+++   W PP ++ WKLN +A+W +    G +GWI+RD  G  I A    I+ +  +  LE  A+ EGLR+++     P+ +E+DS
Subjt:  RGENHSSQAWSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEADS

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]2.0e-0736.36Show/hide
Query:  GENHSSQAWSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEADS
        G+N  ++ W PP ++ WKLN DA+W +      +GWI+RD  G  I  G   I+ +  +  LE  A+ EGLR+++     P+ +E+DS
Subjt:  GENHSSQAWSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEADS

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]2.0e-0736.36Show/hide
Query:  GENHSSQAWSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEADS
        G+N  ++ W PP ++ WKLN DA+W +      +GWI+RD  G  I  G   I+ +  +  LE  A+ EGLR+++     P+ +E+DS
Subjt:  GENHSSQAWSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEADS

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]4.9e-0938.66Show/hide
Query:  DHSYQSNARASRGEN--HSSQAWSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPG-NPLTIE
        + SYQS    S      ++   W PP    W LN DASW+    RG +GWI+R   G  + AG   ++    +K+LEA A+LEGLR+L N+    PL IE
Subjt:  DHSYQSNARASRGEN--HSSQAWSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPG-NPLTIE

Query:  ADSDCLELVKCMNDVDDDL
         DS   E+   +N   +DL
Subjt:  ADSDCLELVKCMNDVDDDL

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134122.0e-0835.96Show/hide
Query:  RGENHSSQAWSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEADS
        R E+++   W PP ++ WKLN +A+W +    G +GWI+RD  G  I A    I+ +  +  LE  A+ EGLR+++     P+ +E+DS
Subjt:  RGENHSSQAWSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEADS

A0A6J1CQG0 uncharacterized protein LOC1110132164.0e-0934.19Show/hide
Query:  SYQSNARASRGE---NHSSQAWSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEAD
        S Q++    RG    N     WS P T+CWKLN DASW+     G +GWI+ D  G  + AG  +I+++  +  LE   ++ GL+ +     +P+ +E+D
Subjt:  SYQSNARASRGE---NHSSQAWSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEAD

Query:  SDCLELVKCMNDVDDDL
        S  +E+++ M   D DL
Subjt:  SDCLELVKCMNDVDDDL

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X19.9e-0836.36Show/hide
Query:  GENHSSQAWSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEADS
        G+N  ++ W PP ++ WKLN DA+W +      +GWI+RD  G  I  G   I+ +  +  LE  A+ EGLR+++     P+ +E+DS
Subjt:  GENHSSQAWSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEADS

A0A6J1DNV9 uncharacterized protein LOC1110224032.4e-0938.66Show/hide
Query:  DHSYQSNARASRGEN--HSSQAWSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPG-NPLTIE
        + SYQS    S      ++   W PP    W LN DASW+    RG +GWI+R   G  + AG   ++    +K+LEA A+LEGLR+L N+    PL IE
Subjt:  DHSYQSNARASRGEN--HSSQAWSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPG-NPLTIE

Query:  ADSDCLELVKCMNDVDDDL
         DS   E+   +N   +DL
Subjt:  ADSDCLELVKCMNDVDDDL

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X29.9e-0836.36Show/hide
Query:  GENHSSQAWSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEADS
        G+N  ++ W PP ++ WKLN DA+W +      +GWI+RD  G  I  G   I+ +  +  LE  A+ EGLR+++     P+ +E+DS
Subjt:  GENHSSQAWSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEADS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein1.0e-0428.7Show/hide
Query:  WSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEADSDCLELVKCMNDVD------D
        W  P  +  K NFDA ++        GWI+R+  G+PI  G M++         E KALL  L+    I G    +  + DC  L+  +N +       +
Subjt:  WSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEADSDCLELVKCMNDVD------D

Query:  DLKPSSSWLNPFGRL
         L+  S W N F  +
Subjt:  DLKPSSSWLNPFGRL

AT4G29090.1 Ribonuclease H-like superfamily protein3.5e-0527.27Show/hide
Query:  WSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEADSDCLELVKCMNDVDDDLKPS
        W PP     K N DA+WN  + R  +GW++R+  G     G   +     +   E +A+   + SL     N +  E+DS  L  +   +++   LKP+
Subjt:  WSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEADSDCLELVKCMNDVDDDLKPS

AT5G44470.1 BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G23320.1)3.0e-0431.71Show/hide
Query:  WKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEADSDCLELVKCMN
        W  N   S     G G LGWI+R+S G+ +  G+ + + + P++  E  AL+  L+S  N+    + IE D D L +++ +N
Subjt:  WKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEADSDCLELVKCMN

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.0e-0426.51Show/hide
Query:  WSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEADSDCL
        WSPP     K N+DAS +  +    LGWI+R+S G+ I  G+ + + +   +  E   L+  +++        +  E D+  +
Subjt:  WSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEADSDCL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATCATCCAAGAAAATCAAGGGAAAGATCATTCGTACCAATCAAATGCAAGAGCTTCAAGGGGGGAGAACCACTCGAGTCAAGCATGGTCGCCGCCGGCGACTTC
TTGTTGGAAATTGAACTTCGACGCCTCATGGAATTCGATCGATGGTAGAGGTGAGCTGGGGTGGATCGTGCGTGACTCTGGAGGGTCTCCCATTTGTGCTGGAATTATGG
AAATTAAAGATCAATGGCCTATGAAGATCCTGGAAGCTAAAGCCCTTTTGGAAGGTTTAAGGAGTTTGAAGAACATACCTGGAAATCCCCTGACGATTGAAGCGGATTCT
GACTGCTTGGAGCTCGTCAAGTGCATGAACGATGTAGATGATGATCTAAAGCCATCATCAAGTTGGCTAAATCCCTTTGGCCGATTAAATTCAACCACTGCCCAAGGATG
CAAAATGGCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAATCATCCAAGAAAATCAAGGGAAAGATCATTCGTACCAATCAAATGCAAGAGCTTCAAGGGGGGAGAACCACTCGAGTCAAGCATGGTCGCCGCCGGCGACTTC
TTGTTGGAAATTGAACTTCGACGCCTCATGGAATTCGATCGATGGTAGAGGTGAGCTGGGGTGGATCGTGCGTGACTCTGGAGGGTCTCCCATTTGTGCTGGAATTATGG
AAATTAAAGATCAATGGCCTATGAAGATCCTGGAAGCTAAAGCCCTTTTGGAAGGTTTAAGGAGTTTGAAGAACATACCTGGAAATCCCCTGACGATTGAAGCGGATTCT
GACTGCTTGGAGCTCGTCAAGTGCATGAACGATGTAGATGATGATCTAAAGCCATCATCAAGTTGGCTAAATCCCTTTGGCCGATTAAATTCAACCACTGCCCAAGGATG
CAAAATGGCGTAG
Protein sequenceShow/hide protein sequence
MEIIQENQGKDHSYQSNARASRGENHSSQAWSPPATSCWKLNFDASWNSIDGRGELGWIVRDSGGSPICAGIMEIKDQWPMKILEAKALLEGLRSLKNIPGNPLTIEADS
DCLELVKCMNDVDDDLKPSSSWLNPFGRLNSTTAQGCKMA