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Lcy06g020000 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g020000
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionreplication protein A 14 kDa subunit B-like
Genome locationChr06:44742027..44743928
RNA-Seq ExpressionLcy06g020000
SyntenyLcy06g020000
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144611.1 replication protein A 14 kDa subunit B [Momordica charantia]1.5e-4995.28Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE
        MDTSNPSVFVNAELLRL+VGRRVRAVIQVQSEG+GVIYGKSTDDNQIIVKGSPPF LSKFVEVIGIADTDKSIR DVWTNFGDSFD+STFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

XP_022943091.1 replication protein A 14 kDa subunit B-like [Cucurbita moschata]6.9e-5094.34Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE
        MDTSNPSVFVNAELLRL+VGRRVRAVIQVQSEG+GVIYGKSTD+NQI+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD+STFN+LCQLANGE
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

XP_022983164.1 replication protein A 14 kDa subunit B-like [Cucurbita maxima]3.4e-4993.4Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE
        MDTSNPSVFVNAELLR++VGRRVRAVIQVQSEG+GVIYGKSTDDNQI VKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFD+STFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE

Query:  FKPLFI
        FKPLF+
Subjt:  FKPLFI

XP_023528146.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]2.0e-4994.34Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE
        MDTSNPSVFVNAELLRL+VGRRVRAVIQVQSEG+GVIYGKSTDDNQI VKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFD+STFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE

Query:  FKPLFI
        FKPLF+
Subjt:  FKPLFI

XP_023540224.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]3.4e-4993.4Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE
        MDTSNPSVFVNAELLRL+VGRRVRAVIQVQSEG+GVIY KSTD+NQI+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD+STFN+LCQLANGE
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

TrEMBL top hitse value%identityAlignment
A0A6J1CTX6 replication protein A 14 kDa subunit B7.4e-5095.28Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE
        MDTSNPSVFVNAELLRL+VGRRVRAVIQVQSEG+GVIYGKSTDDNQIIVKGSPPF LSKFVEVIGIADTDKSIR DVWTNFGDSFD+STFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

A0A6J1F9M2 replication protein A 14 kDa subunit B-like3.7e-4993.4Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE
        MDTSNPSVFVNAELLRL+VGRRVRAVIQVQSEG+GVIYGKSTDD+QI VKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFD+STFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE

Query:  FKPLFI
        FKPLF+
Subjt:  FKPLFI

A0A6J1FQS1 replication protein A 14 kDa subunit B-like3.3e-5094.34Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE
        MDTSNPSVFVNAELLRL+VGRRVRAVIQVQSEG+GVIYGKSTD+NQI+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD+STFN+LCQLANGE
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

A0A6J1J6J3 replication protein A 14 kDa subunit B-like1.6e-4993.4Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE
        MDTSNPSVFVNAELLR++VGRRVRAVIQVQSEG+GVIYGKSTDDNQI VKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFD+STFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE

Query:  FKPLFI
        FKPLF+
Subjt:  FKPLFI

A0A6J1L034 replication protein A 14 kDa subunit B-like3.3e-5094.34Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE
        MDTSNPSVFVNAELLRL+VGRRVRAVIQVQSEG+GVIYGKSTD+NQI+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD+STFN+LCQLANGE
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B2.5e-3464.15Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE
        MDTS+P+ FVN  LLR ++G++VRAVIQV     G + GKSTDD QI+VKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+LANGE
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE

Query:  FKPLFI
        F+ LFI
Subjt:  FKPLFI

Q9LXK1 Replication protein A 14 kDa subunit A5.1e-3260.75Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANG
        MDTS+PS FVN  LLR  +G++VR VIQV     G + GKSTDD QI+V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FD+  +N+LC+LANG
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANG

Query:  EFKPLFI
        EFK LFI
Subjt:  EFKPLFI

Q9SDK9 Replication protein A 14 kDa subunit1.5e-2852.83Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE
        MDTS P+ FVN E+L++ VGRRVR V+Q Q E  G++ G+STD +Q+ +KG+   P+S +VE+IGIA+ +++IRA+V T+FG++FD + FN LC+LANG+
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE

Query:  FKPLFI
         K LF+
Subjt:  FKPLFI

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein3.6e-3360.75Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANG
        MDTS+PS FVN  LLR  +G++VR VIQV     G + GKSTDD QI+V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FD+  +N+LC+LANG
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANG

Query:  EFKPLFI
        EFK LFI
Subjt:  EFKPLFI

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein3.6e-3360.75Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANG
        MDTS+PS FVN  LLR  +G++VR VIQV     G + GKSTDD QI+V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FD+  +N+LC+LANG
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANG

Query:  EFKPLFI
        EFK LFI
Subjt:  EFKPLFI

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein1.7e-3564.15Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE
        MDTS+P+ FVN  LLR ++G++VRAVIQV     G + GKSTDD QI+VKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+LANGE
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGE

Query:  FKPLFI
        F+ LFI
Subjt:  FKPLFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGGCTGCATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAATCCGAAGGCAGTGGAGTTAT
ATACGGTAAATCGACAGATGACAACCAAATTATTGTGAAAGGCTCCCCACCCTTTCCTCTTTCTAAGTTTGTTGAAGTCATTGGAATTGCTGATACTGACAAATCCATAC
GAGCTGATGTGTGGACCAATTTCGGCGATTCATTTGATTCATCGACCTTCAATCAACTATGCCAGCTTGCTAATGGGGAGTTCAAACCCTTGTTTATCTGA
mRNA sequenceShow/hide mRNA sequence
CAATTTTGCCGCTTTCCAAAACCCGCGCCCTTTTTCTTCTGAGTCTCTCGCAGTCCGATCGAATTCCATTTCCGACCAATTATCGGATCTCTGAATCAGATGGATACATC
AAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGGCTGCATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAATCCGAAGGCAGTGGAGTTATATACGGTAAAT
CGACAGATGACAACCAAATTATTGTGAAAGGCTCCCCACCCTTTCCTCTTTCTAAGTTTGTTGAAGTCATTGGAATTGCTGATACTGACAAATCCATACGAGCTGATGTG
TGGACCAATTTCGGCGATTCATTTGATTCATCGACCTTCAATCAACTATGCCAGCTTGCTAATGGGGAGTTCAAACCCTTGTTTATCTGATATTCAAGCCAGACATTCTC
TGGCAAGAAGGCTCGAGCCCTACCTTCGCCTCCCGTGACACGCTAAGTCGCCGATGTTTTCTTCATGTTCTTCTGAAGCTTCCAAGATTTATCATTCATACGGTATGGAA
CTTTTCAGGTAATGGATATATATATAAAATTTGAGTATGCAATGTATGTTTGTGTTAGAATATATTAGAATGAACATTGCCCCAAAATATTCTTCAAAAATCTACTTTAA
TCAATTTTGATCCTGTTATTTCAGGTTATTATAAGCCTTTGTGAATGCGAATAAACTGCTAACCGAAATCCGAAATGCC
Protein sequenceShow/hide protein sequence
MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDSSTFNQLCQLANGEFKPLFI