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Lcy06g020010 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g020010
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr06:44746214..44748786
RNA-Seq ExpressionLcy06g020010
SyntenyLcy06g020010
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015381032.1 uncharacterized protein LOC107174551 [Citrus sinensis]3.1e-0834.85Show/hide
Query:  NPPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKV
        +PPP    K+N DA+ +++++ +GLG +VRDSD +   A I S +        EA AM  GL+  +  N   ++   ESD LE+ID +N     L++   
Subjt:  NPPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKV

Query:  FVEAILDLAQSLGVLHFKHCPRSQNGAAHALA
         +  I +  Q+      +HCPR  N AAH+LA
Subjt:  FVEAILDLAQSLGVLHFKHCPRSQNGAAHALA
XP_015388122.1 uncharacterized protein LOC107178012 [Citrus sinensis]2.3e-0832.58Show/hide
Query:  NPPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKV
        NPPP   +K+N DA+ N+KD+ +GLG I+R+S    V A +  S     +  +EA+A+  G+KS Q   F   ++ +E+D  E++D   S +  ++++  
Subjt:  NPPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKV

Query:  FVEAILDLAQSLGVLHFKHCPRSQNGAAHALA
         +  I +  QS      ++ PR  N  AH LA
Subjt:  FVEAILDLAQSLGVLHFKHCPRSQNGAAHALA
XP_015388332.1 uncharacterized protein LOC107178077 [Citrus sinensis]1.8e-0834.85Show/hide
Query:  NPPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKV
        NPPP   +K+N DA+ N+KD+ +GLG I+R+S+   V A +  S     +  +EA+A+  G+KS Q   F S MI +E+D  E++D   S +  ++++  
Subjt:  NPPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKV

Query:  FVEAILDLAQSLGVLHFKHCPRSQNGAAHALA
         +  I +  QS      ++ PR  N  AH LA
Subjt:  FVEAILDLAQSLGVLHFKHCPRSQNGAAHALA
XP_021763631.1 uncharacterized protein LOC110728264 [Chenopodium quinoa]2.3e-0834.23Show/hide
Query:  REPPESRSRN--------PPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLE
        REP  S  R+        PP    +KLN+DAS + KD R GLG +VRD+    +     S         +EA A+  G++++    F  + +EV SDCL+
Subjt:  REPPESRSRN--------PPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLE

Query:  LIDNLNSGEEDLSDSKVFVEAILDLAQSLGVLHFKHCPRSQNGAAHALA
        +I+ LN  + + S +++ V  IL  A S   + F  CPR  N  AH++A
Subjt:  LIDNLNSGEEDLSDSKVFVEAILDLAQSLGVLHFKHCPRSQNGAAHALA
XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]8.6e-1135.66Show/hide
Query:  KNREPPESRSRNPPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLN
        +++  P +    PP    WKLN DA+W       GLGWIVRDS+   + A+ +  K L  +  LEA     G+K           IE+ESDCLE+++ +N
Subjt:  KNREPPESRSRNPPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLN

Query:  SGEEDLSDSKVFVEAILDLAQSLGVLHFKHCPRSQNGAAHALA
             L++  + VE I    +SL +  FKH P   NG AH +A
Subjt:  SGEEDLSDSKVFVEAILDLAQSLGVLHFKHCPRSQNGAAHALA
TrEMBL top hitse value%identityAlignment
A0A6J1D4B6 uncharacterized protein LOC1110171814.2e-1135.66Show/hide
Query:  KNREPPESRSRNPPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLN
        +++  P +    PP    WKLN DA+W       GLGWIVRDS+   + A+ +  K L  +  LEA     G+K           IE+ESDCLE+++ +N
Subjt:  KNREPPESRSRNPPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLN

Query:  SGEEDLSDSKVFVEAILDLAQSLGVLHFKHCPRSQNGAAHALA
             L++  + VE I    +SL +  FKH P   NG AH +A
Subjt:  SGEEDLSDSKVFVEAILDLAQSLGVLHFKHCPRSQNGAAHALA
A0A7J6F7X7 RNase H domain-containing protein2.8e-0734.35Show/hide
Query:  PPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKVF
        PPP+   KLN D + +    ++G G IVRD     + A   S       KA E   +WEGLK  +        IEV  DC  L+ +L S +++LS     
Subjt:  PPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKVF

Query:  VEAILDLAQSLGVLHFKHCPRSQNGAAHALA
        + AI  +  SL  +   H  R  N AAH LA
Subjt:  VEAILDLAQSLGVLHFKHCPRSQNGAAHALA
A0A7J6H9K5 RNase H domain-containing protein9.6e-0835.11Show/hide
Query:  PPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKVF
        PPP+   KLN DA+ +    ++G G IVRD     + A   S       KA E   +WEGLK  +        IEV  DC  L+ +L S +++LS     
Subjt:  PPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKVF

Query:  VEAILDLAQSLGVLHFKHCPRSQNGAAHALA
        + AI  +  SL  +   H  R  N AAH LA
Subjt:  VEAILDLAQSLGVLHFKHCPRSQNGAAHALA
A0A803L9N8 Uncharacterized protein1.1e-0834.23Show/hide
Query:  REPPESRSRN--------PPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLE
        REP  S  R+        PP    +KLN+DAS + KD R GLG +VRD+    +     S         +EA A+  G++++    F  + +EV SDCL+
Subjt:  REPPESRSRN--------PPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLE

Query:  LIDNLNSGEEDLSDSKVFVEAILDLAQSLGVLHFKHCPRSQNGAAHALA
        +I+ LN  + + S +++ V  IL  A S   + F  CPR  N  AH++A
Subjt:  LIDNLNSGEEDLSDSKVFVEAILDLAQSLGVLHFKHCPRSQNGAAHALA
A0A803P8R6 Uncharacterized protein9.6e-0834.62Show/hide
Query:  PPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKVFV
        PP  C KLN+DA+ +I+ + SG G +VR+S    V    +  K  +  + +EA A+   L+ LQ LN    +I  E+D L ++  L+S ++ +SD    +
Subjt:  PPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKVFV

Query:  EAILDLAQSLGVLHFKHCPRSQNGAAHALA
          I  L       H  H  RS N AAH LA
Subjt:  EAILDLAQSLGVLHFKHCPRSQNGAAHALA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.8e-0529.01Show/hide
Query:  PPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTK-ALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKVF
        PP    K N+DA+W +++ R G+GWI+R+     +    + ++ L  TK  LEA+        L +  F  + I  ESD   L++ LNS ++     +  
Subjt:  PPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTK-ALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKVF

Query:  VEAILDLAQSLGVLHFKHCPRSQNGAAHALA
        +E I  L      + F+  PR  N  A  +A
Subjt:  VEAILDLAQSLGVLHFKHCPRSQNGAAHALA
AT4G29090.1 Ribonuclease H-like superfamily protein2.0e-0529.55Show/hide
Query:  PPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAM-WEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKV
        PPP    K N+DA+WN  +ER G+GW++R+           +   L      E +AM W     L L  F    +  ESD   LI+ LN+ +E     K 
Subjt:  PPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAM-WEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKV

Query:  FVEAILDLAQSLGVLHFKHCPRSQNGAAHALA
         ++ +  L      + F   PR  N  A  +A
Subjt:  FVEAILDLAQSLGVLHFKHCPRSQNGAAHALA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAGAATAGAGAACCACCTGAGTCAAGGAGCCGGAATCCACCGCCACTCTGCTGCTGGAAGCTCAATTCCGATGCTTCGTGGAACATCAAGGATGAGCGGAGTGG
GTTAGGCTGGATTGTTCGTGACTCCGACAGGTCTCCCGTCTGTGCAGACATTGTTTCGAGTAAAAATCTGTGGCCGACGAAAGCTTTGGAAGCAAAAGCTATGTGGGAGG
GTTTGAAAAGCTTACAATTGCTCAATTTTTTGTCGCAGATGATTGAAGTTGAATCCGATTGCCTTGAATTGATCGATAATTTGAATTCCGGTGAAGAAGACCTTTCGGAT
TCCAAAGTCTTTGTGGAAGCCATTCTTGATTTGGCTCAATCCTTGGGGGTGCTCCACTTCAAGCACTGCCCGAGGTCACAAAACGGAGCTGCTCACGCTCTTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAGAATAGAGAACCACCTGAGTCAAGGAGCCGGAATCCACCGCCACTCTGCTGCTGGAAGCTCAATTCCGATGCTTCGTGGAACATCAAGGATGAGCGGAGTGG
GTTAGGCTGGATTGTTCGTGACTCCGACAGGTCTCCCGTCTGTGCAGACATTGTTTCGAGTAAAAATCTGTGGCCGACGAAAGCTTTGGAAGCAAAAGCTATGTGGGAGG
GTTTGAAAAGCTTACAATTGCTCAATTTTTTGTCGCAGATGATTGAAGTTGAATCCGATTGCCTTGAATTGATCGATAATTTGAATTCCGGTGAAGAAGACCTTTCGGAT
TCCAAAGTCTTTGTGGAAGCCATTCTTGATTTGGCTCAATCCTTGGGGGTGCTCCACTTCAAGCACTGCCCGAGGTCACAAAACGGAGCTGCTCACGCTCTTGCTTGA
Protein sequenceShow/hide protein sequence
MEKNREPPESRSRNPPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSD
SKVFVEAILDLAQSLGVLHFKHCPRSQNGAAHALA