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Lcy06g020580 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g020580
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr06:45447771..45448350
RNA-Seq ExpressionLcy06g020580
SyntenyLcy06g020580
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR42018.1 hypothetical protein CICLE_v10013872mg, partial [Citrus clementina]2.4e-0631.2Show/hide
Query:  FQVNTDASVKDEV--VGTGIIIRNEIGDVMVAAQFAGSYTGTIEVVEALAISDGIEFAKPVGNHPIWVETDSLFVWQLVQGVESYDNETQNLIDDIQHCC
        ++VN DA V+ +    G G+++RN +GDVM A+     + G +E VEALA+  G+     +G  P  +++DSL V  L+    +   E + +I + Q   
Subjt:  FQVNTDASVKDEV--VGTGIIIRNEIGDVMVAAQFAGSYTGTIEVVEALAISDGIEFAKPVGNHPIWVETDSLFVWQLVQGVESYDNETQNLIDDIQHCC

Query:  RSGEGEMKGLPLTSRLTNQATNALA
         S    +K L    +  N+A + LA
Subjt:  RSGEGEMKGLPLTSRLTNQATNALA

RXH84111.1 hypothetical protein DVH24_027010 [Malus domestica]7.1e-0636.27Show/hide
Query:  DHFQVNTDASVKDEVVGTGIIIRNEIGDVMVAAQFAGSYTGTIEVVEALAISDGIEFAKPVGNHPIWVETDSLFVWQLVQGVESYDNETQNLIDDIQHCC
        D F++N D SVK+ V   G IIRNE G+ M+A   +   T TI V E LA+ D     +      I VE DS  +  ++QG         ++I+DI++  
Subjt:  DHFQVNTDASVKDEVVGTGIIIRNEIGDVMVAAQFAGSYTGTIEVVEALAISDGIEFAKPVGNHPIWVETDSLFVWQLVQGVESYDNETQNLIDDIQHCC

Query:  RS
        RS
Subjt:  RS

XP_015381046.1 uncharacterized protein LOC107174557 [Citrus sinensis]4.2e-0635.2Show/hide
Query:  FQVNTDAS--VKDEVVGTGIIIRNEIGDVMVAAQFAGSYTGTIEVVEALAISDGIEFAKPVGNHPIWVETDSLFVWQLVQGVESYDNETQNLIDDIQHCC
        F++NTD +  V++  V  G++IRN    VM+A    G+Y+  + + +A AI  GI  AK  G  P+ +E+DSLFV QL+Q  +    E   +I D+Q   
Subjt:  FQVNTDAS--VKDEVVGTGIIIRNEIGDVMVAAQFAGSYTGTIEVVEALAISDGIEFAKPVGNHPIWVETDSLFVWQLVQGVESYDNETQNLIDDIQHCC

Query:  RSGEGEMKGLPLTSRLTNQATNALA
        +  + + +   ++S   NQA +ALA
Subjt:  RSGEGEMKGLPLTSRLTNQATNALA

XP_015383651.1 uncharacterized protein LOC107176111 [Citrus sinensis]7.1e-0633.59Show/hide
Query:  FQVNTDASV--KDEVVGTGIIIRNEIGDVMVAAQFAGSYTGTIEVVEALAISDGIEFAKPVGNHPIWVETDSLFVWQLVQGVESYDNETQNLIDDIQHCC
        F+VN DASV  +   VG G +IR+  G V+ AA     +   +   EA A   G+E A+ VG  P+ +ETDS  V  LV   +S   E   +I D+Q C 
Subjt:  FQVNTDASV--KDEVVGTGIIIRNEIGDVMVAAQFAGSYTGTIEVVEALAISDGIEFAKPVGNHPIWVETDSLFVWQLVQGVESYDNETQNLIDDIQHCC

Query:  RSGEGEMKGLPLTSRLTNQATNALANSL
        +  +       ++ + T +A+N +A++L
Subjt:  RSGEGEMKGLPLTSRLTNQATNALANSL

XP_024039172.1 uncharacterized protein LOC112097823 [Citrus clementina]4.0e-0938.4Show/hide
Query:  FQVNTDAS--VKDEVVGTGIIIRNEIGDVMVAAQFAGSYTGTIEVVEALAISDGIEFAKPVGNHPIWVETDSLFVWQLVQGVESYDNETQNLIDDIQHCC
        F++NTD +  V++  V  G +IRN  G VM+A    G+Y   + + EA AI  GI  AK  G  P+ +E+DSLFV QL+QG +    E   +I D+Q   
Subjt:  FQVNTDAS--VKDEVVGTGIIIRNEIGDVMVAAQFAGSYTGTIEVVEALAISDGIEFAKPVGNHPIWVETDSLFVWQLVQGVESYDNETQNLIDDIQHCC

Query:  RSGEGEMKGLPLTSRLTNQATNALA
        +  +     +   SR  NQA +ALA
Subjt:  RSGEGEMKGLPLTSRLTNQATNALA

TrEMBL top hitse value%identityAlignment
A0A498IRL4 RNase H domain-containing protein3.4e-0636.27Show/hide
Query:  DHFQVNTDASVKDEVVGTGIIIRNEIGDVMVAAQFAGSYTGTIEVVEALAISDGIEFAKPVGNHPIWVETDSLFVWQLVQGVESYDNETQNLIDDIQHCC
        D F++N D SVK+ V   G IIRNE G+ M+A   +   T TI V E LA+ D     +      I VE DS  +  ++QG         ++I+DI++  
Subjt:  DHFQVNTDASVKDEVVGTGIIIRNEIGDVMVAAQFAGSYTGTIEVVEALAISDGIEFAKPVGNHPIWVETDSLFVWQLVQGVESYDNETQNLIDDIQHCC

Query:  RS
        RS
Subjt:  RS

A0A5C7GW84 RNase H domain-containing protein1.0e-0532.28Show/hide
Query:  FQVNTDAS--VKDEVVGTGIIIRNEIGDVMVA--AQFAGSYTGTIEVVEALAISDGIEFAKPVGNHPIWVETDSLFVWQLVQGVESYDNETQNLIDDIQH
        F++NTDA+  +++  VG  ++IRN  G VM++    F   Y+   ++ EALA+ +G+  AK  G  P  +E+D+L V + +    S  +E   ++DDI H
Subjt:  FQVNTDAS--VKDEVVGTGIIIRNEIGDVMVA--AQFAGSYTGTIEVVEALAISDGIEFAKPVGNHPIWVETDSLFVWQLVQGVESYDNETQNLIDDIQH

Query:  CCRSGEGEMKGLPLTSRLTNQATNALA
         CR  E          RL  +  + LA
Subjt:  CCRSGEGEMKGLPLTSRLTNQATNALA

A0A803P0U0 Uncharacterized protein2.6e-0631.47Show/hide
Query:  VNTDASV--KDEVVGTGIIIRNEIGDVMVAAQFAGSYTGTIEVVEALAISDGIEFAKPVGNHPIWVETDSLFVWQLVQGVESYDNETQNLIDDIQHCCRS
        +N+DASV  +  + G G +IRN +G+V+ A       + ++EV E LA+  GI+ A  V  +P  +++D L V   + GV     +   L+DDI+     
Subjt:  VNTDASV--KDEVVGTGIIIRNEIGDVMVAAQFAGSYTGTIEVVEALAISDGIEFAKPVGNHPIWVETDSLFVWQLVQGVESYDNETQNLIDDIQHCCRS

Query:  GEGEMKGLPLTSRLTNQATNALANSLEAVEEMASSLRRLWNGW
         E    G  L  +   +  N LA+ L A E + S   +LW G+
Subjt:  GEGEMKGLPLTSRLTNQATNALANSLEAVEEMASSLRRLWNGW

V4RLS8 RNase H domain-containing protein (Fragment)4.5e-0635.42Show/hide
Query:  FQVNTDASVK--DEVVGTGIIIRNEIGDVMVAAQFAGSYTGTIEVVEALAISDGIEFAKPVGNHPIWVETDSLFVWQLVQGVESYDNETQNLIDDI
        F++N+DA++   D + G G++IRN  G+ M A+ +   + G IE+ EA AI +GI+ A+ +G  P+ VE+DS+ V +L+    + + E   +I +I
Subjt:  FQVNTDASVK--DEVVGTGIIIRNEIGDVMVAAQFAGSYTGTIEVVEALAISDGIEFAKPVGNHPIWVETDSLFVWQLVQGVESYDNETQNLIDDI

V4S3Q7 Uncharacterized protein (Fragment)1.2e-0631.2Show/hide
Query:  FQVNTDASVKDEV--VGTGIIIRNEIGDVMVAAQFAGSYTGTIEVVEALAISDGIEFAKPVGNHPIWVETDSLFVWQLVQGVESYDNETQNLIDDIQHCC
        ++VN DA V+ +    G G+++RN +GDVM A+     + G +E VEALA+  G+     +G  P  +++DSL V  L+    +   E + +I + Q   
Subjt:  FQVNTDASVKDEV--VGTGIIIRNEIGDVMVAAQFAGSYTGTIEVVEALAISDGIEFAKPVGNHPIWVETDSLFVWQLVQGVESYDNETQNLIDDIQHCC

Query:  RSGEGEMKGLPLTSRLTNQATNALA
         S    +K L    +  N+A + LA
Subjt:  RSGEGEMKGLPLTSRLTNQATNALA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAACTTCGACATTCATAGATGATACAATAGATACAGGGAGGCAGGACCACTTTCAAGTCAACACAGATGCTTCAGTTAAAGACGAAGTGGTTGGTACAGGC
ATTATTATCCGAAATGAGATTGGTGATGTCATGGTAGCAGCCCAATTTGCGGGTTCATATACAGGAACAATCGAAGTAGTTGAAGCTTTAGCAATCAGTGATGGA
ATCGAATTTGCCAAACCCGTTGGTAATCATCCAATCTGGGTGGAAACCGACTCTCTTTTTGTGTGGCAACTGGTTCAAGGAGTAGAATCCTATGACAATGAAACC
CAAAACTTAATTGACGATATCCAACACTGCTGTCGTTCAGGGGAAGGGGAAATGAAAGGGCTTCCACTTACCTCTAGGCTGACGAATCAAGCGACCAATGCATTA
GCAAATTCCCTCGAAGCAGTCGAAGAGATGGCGTCTAGCTTGAGGAGGTTATGGAATGGGTGGCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTAACTTCGACATTCATAGATGATACAATAGATACAGGGAGGCAGGACCACTTTCAAGTCAACACAGATGCTTCAGTTAAAGACGAAGTGGTTGGTACAGGC
ATTATTATCCGAAATGAGATTGGTGATGTCATGGTAGCAGCCCAATTTGCGGGTTCATATACAGGAACAATCGAAGTAGTTGAAGCTTTAGCAATCAGTGATGGA
ATCGAATTTGCCAAACCCGTTGGTAATCATCCAATCTGGGTGGAAACCGACTCTCTTTTTGTGTGGCAACTGGTTCAAGGAGTAGAATCCTATGACAATGAAACC
CAAAACTTAATTGACGATATCCAACACTGCTGTCGTTCAGGGGAAGGGGAAATGAAAGGGCTTCCACTTACCTCTAGGCTGACGAATCAAGCGACCAATGCATTA
GCAAATTCCCTCGAAGCAGTCGAAGAGATGGCGTCTAGCTTGAGGAGGTTATGGAATGGGTGGCTCTAA
Protein sequenceShow/hide protein sequence
MLTSTFIDDTIDTGRQDHFQVNTDASVKDEVVGTGIIIRNEIGDVMVAAQFAGSYTGTIEVVEALAISDGIEFAKPVGNHPIWVETDSLFVWQLVQGVESYDNET
QNLIDDIQHCCRSGEGEMKGLPLTSRLTNQATNALANSLEAVEEMASSLRRLWNGWL