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Lcy06g020960 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g020960
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr06:45947748..45948433
RNA-Seq ExpressionLcy06g020960
SyntenyLcy06g020960
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]4.8e-1027.91Show/hide
Query:  RAKEVWTRL-------DVGGQIGWERDMDIKDKWIHLADSVPDTVLERICVGCWAIWNDRNNTIHNHPVPPVNVRCEWIDDYLYDFKTT--NQRIGRKAQ
        RAK++W  +        + G + +   MDI   W+ L D +     +      WAIW DRN+  H   V    +RC WI  Y  ++     N+RI  +  
Subjt:  RAKEVWTRL-------DVGGQIGWERDMDIKDKWIHLADSVPDTVLERICVGCWAIWNDRNNTIHNHPVPPVNVRCEWIDDYLYDFKTT--NQRIGRKAQ

Query:  SIQDINRLISQGKKYIMHVDAAWDVVNKKSAIGVVLRDHKGQLKLAMHKGVPIFSSPLCAEVVVVFEGLKLA
        S+   +      +   M V++     +  + +G+++RDH G L +A    +P+  +PL AE+  + E LKLA
Subjt:  SIQDINRLISQGKKYIMHVDAAWDVVNKKSAIGVVLRDHKGQLKLAMHKGVPIFSSPLCAEVVVVFEGLKLA

XP_022141766.1 uncharacterized protein LOC111012047 [Momordica charantia]1.4e-0927.27Show/hide
Query:  IGWERDMDIKDKWIHLADSVPDTVLERICVG--CWAIWNDRNNTIHNHPVPPVNVRCEWIDDYLYDFKTTNQRIGRKAQSIQDINRLISQGKKYI-MHVD
        +G + +    D+W    +++  T+ E +  G  CWA WNDRN   +   V  V+   +WI +Y  +  T  ++     +++  +       K  + ++VD
Subjt:  IGWERDMDIKDKWIHLADSVPDTVLERICVG--CWAIWNDRNNTIHNHPVPPVNVRCEWIDDYLYDFKTTNQRIGRKAQSIQDINRLISQGKKYI-MHVD

Query:  AAWDVVNKKSAIGVVLRDHKGQLKLAMHKGVPIFSSPLCAEVVVVFEGLKLARR
        AA+DV N++  +GV++RD +  +  A+     + +SPL AE+  + E ++LA R
Subjt:  AAWDVVNKKSAIGVVLRDHKGQLKLAMHKGVPIFSSPLCAEVVVVFEGLKLARR

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]3.1e-0929.31Show/hide
Query:  RAKEVWTRLDVGGQIGWERDMDIKDKWIHLADSVPDTVLERICVGCWAIWNDRNNTIHNHPVPPVNVRCEWIDDYLYDFKTTNQRIGRKAQSIQD--INR
        RAKEVW  L        + +  ++D  ++L +S+     + + VG WAIWNDRN       +P   +R +WI  Y+ DF+       R   S+ D  I  
Subjt:  RAKEVWTRLDVGGQIGWERDMDIKDKWIHLADSVPDTVLERICVGCWAIWNDRNNTIHNHPVPPVNVRCEWIDDYLYDFKTTNQRIGRKAQSIQD--INR

Query:  LISQGKKYI-------------MHVDAAWDVVNKKSAIGVVLRDHKGQLKLAMHKGVPIFSSPLCAEVVVVFEG
          S   + I             ++VDAA      ++ IG+V R+ KGQ+  A          PL AE + +F+G
Subjt:  LISQGKKYI-------------MHVDAAWDVVNKKSAIGVVLRDHKGQLKLAMHKGVPIFSSPLCAEVVVVFEG

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]6.3e-1026.67Show/hide
Query:  RAKEVW-TRLDVGGQIGWERDMDIKDKWIHLADSVPDTVLERICVGCWAIWNDRNNTIHNHPVPPVNVRCEWIDDYLYDFKTTNQRIGRKAQSIQDINRL
        RA+++W T       +  E ++   + W  L + +    L    +  W IWNDRN+ IH   V PV  +CEW+  +L     +  ++   +   Q  +R 
Subjt:  RAKEVW-TRLDVGGQIGWERDMDIKDKWIHLADSVPDTVLERICVGCWAIWNDRNNTIHNHPVPPVNVRCEWIDDYLYDFKTTNQRIGRKAQSIQDINRL

Query:  I------SQGKKYIMHVDAAWDVVNKKSAIGVVLRDHKGQLKLAMHKGVPIFSSPLCAEVVVVFEGLKLARRNDVKSLSL
        +      S      ++ DAA       ++ G ++RD    L  A    VP   SPL AE+  + EGLK A  ++   L +
Subjt:  I------SQGKKYIMHVDAAWDVVNKKSAIGVVLRDHKGQLKLAMHKGVPIFSSPLCAEVVVVFEGLKLARRNDVKSLSL

XP_024190234.1 uncharacterized protein LOC112194221 [Rosa chinensis]4.8e-1028.57Show/hide
Query:  CAWRAKEVWTRLDVGGQIGWERDMDIKDKWIHLADSVPDTVLERICVGCWAIWNDRNNTIH-------NHPVPPVNVRCEWIDDYLYDFKTTNQRIGRKA
        C W +K+VW    + G     R+    D + H+  +     +E   V CW +W  RN   H        H V   N   EW++++  D + +N+ + + A
Subjt:  CAWRAKEVWTRLDVGGQIGWERDMDIKDKWIHLADSVPDTVLERICVGCWAIWNDRNNTIH-------NHPVPPVNVRCEWIDDYLYDFKTTNQRIGRKA

Query:  -QSIQDINRLISQGKKYIMHVDAAWDVVNKKSAIGVVLRDHKGQLKLAMHKGVPIFSSPLCAEVVVVFEGLKLARRNDVKSL
         Q    +        K  ++ DAA D   KK+ +G+V+RD +G+LK A HK +P   S +  E + V+ GL L R    ++L
Subjt:  -QSIQDINRLISQGKKYIMHVDAAWDVVNKKSAIGVVLRDHKGQLKLAMHKGVPIFSSPLCAEVVVVFEGLKLARRNDVKSL

TrEMBL top hitse value%identityAlignment
A0A6J1BQ49 uncharacterized protein LOC1110047862.3e-1027.91Show/hide
Query:  RAKEVWTRL-------DVGGQIGWERDMDIKDKWIHLADSVPDTVLERICVGCWAIWNDRNNTIHNHPVPPVNVRCEWIDDYLYDFKTT--NQRIGRKAQ
        RAK++W  +        + G + +   MDI   W+ L D +     +      WAIW DRN+  H   V    +RC WI  Y  ++     N+RI  +  
Subjt:  RAKEVWTRL-------DVGGQIGWERDMDIKDKWIHLADSVPDTVLERICVGCWAIWNDRNNTIHNHPVPPVNVRCEWIDDYLYDFKTT--NQRIGRKAQ

Query:  SIQDINRLISQGKKYIMHVDAAWDVVNKKSAIGVVLRDHKGQLKLAMHKGVPIFSSPLCAEVVVVFEGLKLA
        S+   +      +   M V++     +  + +G+++RDH G L +A    +P+  +PL AE+  + E LKLA
Subjt:  SIQDINRLISQGKKYIMHVDAAWDVVNKKSAIGVVLRDHKGQLKLAMHKGVPIFSSPLCAEVVVVFEGLKLA

A0A6J1CK80 uncharacterized protein LOC1110120476.8e-1027.27Show/hide
Query:  IGWERDMDIKDKWIHLADSVPDTVLERICVG--CWAIWNDRNNTIHNHPVPPVNVRCEWIDDYLYDFKTTNQRIGRKAQSIQDINRLISQGKKYI-MHVD
        +G + +    D+W    +++  T+ E +  G  CWA WNDRN   +   V  V+   +WI +Y  +  T  ++     +++  +       K  + ++VD
Subjt:  IGWERDMDIKDKWIHLADSVPDTVLERICVG--CWAIWNDRNNTIHNHPVPPVNVRCEWIDDYLYDFKTTNQRIGRKAQSIQDINRLISQGKKYI-MHVD

Query:  AAWDVVNKKSAIGVVLRDHKGQLKLAMHKGVPIFSSPLCAEVVVVFEGLKLARR
        AA+DV N++  +GV++RD +  +  A+     + +SPL AE+  + E ++LA R
Subjt:  AAWDVVNKKSAIGVVLRDHKGQLKLAMHKGVPIFSSPLCAEVVVVFEGLKLARR

A0A6J1CTE3 uncharacterized protein LOC1110145781.5e-0929.31Show/hide
Query:  RAKEVWTRLDVGGQIGWERDMDIKDKWIHLADSVPDTVLERICVGCWAIWNDRNNTIHNHPVPPVNVRCEWIDDYLYDFKTTNQRIGRKAQSIQD--INR
        RAKEVW  L        + +  ++D  ++L +S+     + + VG WAIWNDRN       +P   +R +WI  Y+ DF+       R   S+ D  I  
Subjt:  RAKEVWTRLDVGGQIGWERDMDIKDKWIHLADSVPDTVLERICVGCWAIWNDRNNTIHNHPVPPVNVRCEWIDDYLYDFKTTNQRIGRKAQSIQD--INR

Query:  LISQGKKYI-------------MHVDAAWDVVNKKSAIGVVLRDHKGQLKLAMHKGVPIFSSPLCAEVVVVFEG
          S   + I             ++VDAA      ++ IG+V R+ KGQ+  A          PL AE + +F+G
Subjt:  LISQGKKYI-------------MHVDAAWDVVNKKSAIGVVLRDHKGQLKLAMHKGVPIFSSPLCAEVVVVFEG

A0A6J1DX30 uncharacterized protein LOC1110248743.0e-1026.67Show/hide
Query:  RAKEVW-TRLDVGGQIGWERDMDIKDKWIHLADSVPDTVLERICVGCWAIWNDRNNTIHNHPVPPVNVRCEWIDDYLYDFKTTNQRIGRKAQSIQDINRL
        RA+++W T       +  E ++   + W  L + +    L    +  W IWNDRN+ IH   V PV  +CEW+  +L     +  ++   +   Q  +R 
Subjt:  RAKEVW-TRLDVGGQIGWERDMDIKDKWIHLADSVPDTVLERICVGCWAIWNDRNNTIHNHPVPPVNVRCEWIDDYLYDFKTTNQRIGRKAQSIQDINRL

Query:  I------SQGKKYIMHVDAAWDVVNKKSAIGVVLRDHKGQLKLAMHKGVPIFSSPLCAEVVVVFEGLKLARRNDVKSLSL
        +      S      ++ DAA       ++ G ++RD    L  A    VP   SPL AE+  + EGLK A  ++   L +
Subjt:  I------SQGKKYIMHVDAAWDVVNKKSAIGVVLRDHKGQLKLAMHKGVPIFSSPLCAEVVVVFEGLKLARRNDVKSLSL

A0A7J9BAK4 RNase H domain-containing protein (Fragment)4.4e-0929.41Show/hide
Query:  CVGCWAIWNDRNNTIHNHPVPPVNVRCEWIDDYLYDFKTTNQRIGRKAQSIQD--INRLISQGKKYIMHVDAAWDVVNKKSAIGVVLRDHKGQL---KLA
        C   W IW+ RN T+H        V  + I+ YL +     + +G+K  ++++  I RL  +  +  +H DAA+D    +SA GV++RD +G++   K  
Subjt:  CVGCWAIWNDRNNTIHNHPVPPVNVRCEWIDDYLYDFKTTNQRIGRKAQSIQD--INRLISQGKKYIMHVDAAWDVVNKKSAIGVVLRDHKGQL---KLA

Query:  MHKGVPIFSSPLCAEVVVVFEGLKLARRNDVKSLSL
        +H  V   SSP  AE +   + +KL     ++S+++
Subjt:  MHKGVPIFSSPLCAEVVVVFEGLKLARRNDVKSLSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTATGCTCGTTGTGCTTGGAGAGCAAAGGAAGTGTGGACAAGGTTGGATGTGGGAGGTCAAATTGGATGGGAAAGAGACATGGACATTAAAGATAAATGGATCCA
TTTAGCTGACTCTGTTCCGGATACAGTTTTAGAGCGAATTTGTGTGGGGTGTTGGGCTATTTGGAATGATCGTAATAACACCATTCATAATCATCCTGTTCCTCCTGTTA
ATGTTCGTTGTGAATGGATTGATGATTATTTGTATGATTTTAAGACGACAAATCAGCGTATTGGTCGGAAGGCCCAGTCGATCCAAGATATTAACAGGTTGATTTCTCAA
GGAAAAAAATACATAATGCATGTGGATGCAGCATGGGACGTGGTGAATAAGAAAAGTGCTATTGGTGTGGTGCTTCGTGACCATAAGGGCCAGTTAAAGCTAGCAATGCA
TAAGGGAGTTCCTATTTTTTCGTCACCTTTGTGTGCTGAGGTTGTCGTAGTGTTTGAGGGCCTTAAGCTTGCGCGTCGGAATGATGTCAAAAGTTTGTCGCTTTCTCCAC
GTTTGTGGTCGTCGAACTTTCCTGGTTGGATTGTTCAACAAGCTCAATATGAGCTTCAGTATTTTGTATCCCCTAGGGGAAGTATTTTGAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTATGCTCGTTGTGCTTGGAGAGCAAAGGAAGTGTGGACAAGGTTGGATGTGGGAGGTCAAATTGGATGGGAAAGAGACATGGACATTAAAGATAAATGGATCCA
TTTAGCTGACTCTGTTCCGGATACAGTTTTAGAGCGAATTTGTGTGGGGTGTTGGGCTATTTGGAATGATCGTAATAACACCATTCATAATCATCCTGTTCCTCCTGTTA
ATGTTCGTTGTGAATGGATTGATGATTATTTGTATGATTTTAAGACGACAAATCAGCGTATTGGTCGGAAGGCCCAGTCGATCCAAGATATTAACAGGTTGATTTCTCAA
GGAAAAAAATACATAATGCATGTGGATGCAGCATGGGACGTGGTGAATAAGAAAAGTGCTATTGGTGTGGTGCTTCGTGACCATAAGGGCCAGTTAAAGCTAGCAATGCA
TAAGGGAGTTCCTATTTTTTCGTCACCTTTGTGTGCTGAGGTTGTCGTAGTGTTTGAGGGCCTTAAGCTTGCGCGTCGGAATGATGTCAAAAGTTTGTCGCTTTCTCCAC
GTTTGTGGTCGTCGAACTTTCCTGGTTGGATTGTTCAACAAGCTCAATATGAGCTTCAGTATTTTGTATCCCCTAGGGGAAGTATTTTGAGTTAA
Protein sequenceShow/hide protein sequence
MGYARCAWRAKEVWTRLDVGGQIGWERDMDIKDKWIHLADSVPDTVLERICVGCWAIWNDRNNTIHNHPVPPVNVRCEWIDDYLYDFKTTNQRIGRKAQSIQDINRLISQ
GKKYIMHVDAAWDVVNKKSAIGVVLRDHKGQLKLAMHKGVPIFSSPLCAEVVVVFEGLKLARRNDVKSLSLSPRLWSSNFPGWIVQQAQYELQYFVSPRGSILS