; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy06g022070 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g022070
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionGlycine-rich RNA-binding protein
Genome locationChr06:46987475..46989882
RNA-Seq ExpressionLcy06g022070
SyntenyLcy06g022070
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_002274178.1 PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial isoform X1 [Vitis vinifera]2.0e-5783.8Show/hide
Query:  MAFASAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAK
        MAFAS+FRRVLTGSS    S  Q +  RFNST+T+PKLFVSGLSRLTTD+KLKEAFSPFGQL+EAKVITDR SGRSKGFGFVTY T+EEAEKARE MNAK
Subjt:  MAFASAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAK

Query:  FLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG
        FLDGWVIFVDPAKPREPRPPPQ +PES+E GFRTNKTIGWCG
Subjt:  FLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG

XP_010260092.1 PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial [Nelumbo nucifera]5.9e-5781.82Show/hide
Query:  MAFASAFRRVLTGSSLTSSSLH-QLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNA
        MAF SAFRR L+GSS  SS L  +L S R NSTLT PKLF+SGLSRLTTD+KLKEAFSPFG L+EAKVI DR SGRSKGFGFVTYATIE+AEKARE MNA
Subjt:  MAFASAFRRVLTGSSLTSSSLH-QLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNA

Query:  KFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG
        KFLDGWVIFVDPAKPREPRPPPQP+PE +E GFRTNKT+GWCG
Subjt:  KFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG

XP_022145577.1 organelle RRM domain-containing protein 2, mitochondrial-like [Momordica charantia]5.5e-6388.97Show/hide
Query:  MAFASAFRRVLTGSSLTSSSLH----QLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREE
        MAFASAFRRVL GSS  SSSL     Q T+ RF STLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYA+IEEAEKAREE
Subjt:  MAFASAFRRVLTGSSLTSSSLH----QLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPQPESTEGFRTNKTIGWCG
        MNAKFLDGWVIFVDPAKPREPRPPPQP  E TEGFRTNKTIGWCG
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPQPESTEGFRTNKTIGWCG

XP_034692789.1 organelle RRM domain-containing protein 2, mitochondrial [Vitis riparia]1.6e-5783.8Show/hide
Query:  MAFASAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAK
        MAFAS+FRRVLTGSS    S  Q +  RFNST+T+PKLFVSGLSRLTTD+KLKEAFSPFGQL+EAKVITDR SGRSKGFGFVTY T+EEAEKARE MNAK
Subjt:  MAFASAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAK

Query:  FLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG
        FLDGWVIFVDPAKPREPRPPPQ +PES+E GFRTNKTIGWCG
Subjt:  FLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG

XP_041025917.1 organelle RRM domain-containing protein 2, mitochondrial [Juglans microcarpa x Juglans regia]2.2e-5680.42Show/hide
Query:  MAFASAFRRVLTGSSLTSSSLH-QLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNA
        MAF S+ RR+L+GSS  SS LH Q TS R N+TLT+PKLF+SGLSRLTTD+KLKEAFSPFGQL++AKVI DRA+GRSKGFGFVTYA+IEEAEKARE MNA
Subjt:  MAFASAFRRVLTGSSLTSSSLH-QLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNA

Query:  KFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG
        KFLDGWVIFVDPAKPREPRPPPQP  ES++ GFRTNKT+GWCG
Subjt:  KFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG

TrEMBL top hitse value%identityAlignment
A0A1U8AE68 glycine-rich RNA-binding protein 6, mitochondrial2.9e-5781.82Show/hide
Query:  MAFASAFRRVLTGSSLTSSSLH-QLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNA
        MAF SAFRR L+GSS  SS L  +L S R NSTLT PKLF+SGLSRLTTD+KLKEAFSPFG L+EAKVI DR SGRSKGFGFVTYATIE+AEKARE MNA
Subjt:  MAFASAFRRVLTGSSLTSSSLH-QLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNA

Query:  KFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG
        KFLDGWVIFVDPAKPREPRPPPQP+PE +E GFRTNKT+GWCG
Subjt:  KFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG

A0A5B7A8G9 RRM domain-containing protein1.1e-5680.42Show/hide
Query:  MAFASAFRRVLTGSSLTSSSLH-QLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNA
        MAFASAFRR+L GSS  SS +H Q  S R +STLT PKLFVSGLSRLTTD+KLKEAFSPFGQL+EAKVI DRASGRSKGFGFVTYATI++A KA+E MNA
Subjt:  MAFASAFRRVLTGSSLTSSSLH-QLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNA

Query:  KFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG
        K+LDGWVIFVDPAKPREPRPPPQP+P+ +E GFRTNKT+GWCG
Subjt:  KFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG

A0A5B7BY51 RRM domain-containing protein4.9e-5781.82Show/hide
Query:  MAFASAFRRVLTGSSLTSSSLH-QLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNA
        MAFAS+FRR L GSS+ SS LH Q  S R NSTL+ PKLFVSGLSRLTTD+KLKE FS FGQL+EAKVI DRASGRSKGFGFVTYATIE+AEKARE MNA
Subjt:  MAFASAFRRVLTGSSLTSSSLH-QLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNA

Query:  KFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG
        K+LDGWVIFVDPAKPREPRPPPQP+P+ +E GFRTNKTIGWCG
Subjt:  KFLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG

A0A6J1CX06 organelle RRM domain-containing protein 2, mitochondrial-like2.7e-6388.97Show/hide
Query:  MAFASAFRRVLTGSSLTSSSLH----QLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREE
        MAFASAFRRVL GSS  SSSL     Q T+ RF STLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYA+IEEAEKAREE
Subjt:  MAFASAFRRVLTGSSLTSSSLH----QLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPPQPQPESTEGFRTNKTIGWCG
        MNAKFLDGWVIFVDPAKPREPRPPPQP  E TEGFRTNKTIGWCG
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPQPQPESTEGFRTNKTIGWCG

D7TQ88 RRM domain-containing protein9.8e-5883.8Show/hide
Query:  MAFASAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAK
        MAFAS+FRRVLTGSS    S  Q +  RFNST+T+PKLFVSGLSRLTTD+KLKEAFSPFGQL+EAKVITDR SGRSKGFGFVTY T+EEAEKARE MNAK
Subjt:  MAFASAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAK

Query:  FLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG
        FLDGWVIFVDPAKPREPRPPPQ +PES+E GFRTNKTIGWCG
Subjt:  FLDGWVIFVDPAKPREPRPPPQPQPESTE-GFRTNKTIGWCG

SwissProt top hitse value%identityAlignment
C0HFE5 Organelle RRM domain-containing protein 1, chloroplastic6.9e-1651.9Show/hide
Query:  KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPR
        +LFV+GLS  T++  L+ AF PFG+LVE K+I DR S RSKG+ FV Y T E    A + MN + ++GW+I VD AK R
Subjt:  KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPR

Q6YWP9 Organelle RRM domain-containing protein 1, chloroplastic9.0e-1642.31Show/hide
Query:  KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAK--PREPRPPPQPQPESTEGFRTN
        +LFV+GLS  T++  L+ AF PFG+LVE K+I D+ S RSKG+ F+ Y T E    A + MN + ++GW+I VD AK   R+ +PP      S +  R+ 
Subjt:  KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAK--PREPRPPPQPQPESTEGFRTN

Query:  KTIG
           G
Subjt:  KTIG

Q9FFZ6 Small RNA-binding protein 11, chloroplastic9.6e-1850.51Show/hide
Query:  APKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP
        A KLF+ GLS  TT+  L EAFS  GQ+VEA+++ DR S RSKGFGFVT+A+ +EA+KA  E N + L+G  IFVD AK ++           R PP P
Subjt:  APKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP

Q9FIU6 Organelle RRM domain-containing protein 2, mitochondrial3.8e-2258.62Show/hide
Query:  LFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPQ
        LFVSGLS+ TT + L+ AF+ FG++ +AKV+TDR SG SKGFGFV YAT+E++ K    M+ KFLDGWVIF + A+PRE     QPQ
Subjt:  LFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPQ

Q9FX45 Organelle RRM domain-containing protein 6, chloroplastic4.8e-1743.57Show/hide
Query:  SAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAP--KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFL
        SA RR   G  L SS L   +S    S+ + P  KL+VSGLS  TT+D L++ F  FG L+   ++ D+ + R KGF F+ Y T EEA KA + M+ KFL
Subjt:  SAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAP--KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFL

Query:  DGWVIFVDP---------AKPREPRPPPQPQPESTEGFRT
        DG VIFV+          AKPR   P PQ +P +   FRT
Subjt:  DGWVIFVDP---------AKPREPRPPPQPQPESTEGFRT

Arabidopsis top hitse value%identityAlignment
AT1G18630.1 glycine-rich RNA-binding protein 66.4e-1754.22Show/hide
Query:  NSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPA
        N +LT  K+FV GLS  T  + LKEAF  FG++V+A V+ DR SG S+GFGFVTY +IE A  A + M  K LDG +I V PA
Subjt:  NSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPA

AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.4e-1843.57Show/hide
Query:  SAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAP--KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFL
        SA RR   G  L SS L   +S    S+ + P  KL+VSGLS  TT+D L++ F  FG L+   ++ D+ + R KGF F+ Y T EEA KA + M+ KFL
Subjt:  SAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAP--KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFL

Query:  DGWVIFVDP---------AKPREPRPPPQPQPESTEGFRT
        DG VIFV+          AKPR   P PQ +P +   FRT
Subjt:  DGWVIFVDP---------AKPREPRPPPQPQPESTEGFRT

AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.8e-4870.34Show/hide
Query:  MAFASAFRRVLTGSS--LTSSSLHQLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMN
        MAF S+FRR++ GSS  L+S SL      R  STLT+P+LFVSGLSRLTT++KL++AF+ FGQLV+A+VITDR SGRSKGFGFVTYATIE+AEKA+ EMN
Subjt:  MAFASAFRRVLTGSS--LTSSSLHQLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMN

Query:  AKFLDGWVIFVDPAKPREPRPPPQPQ---PESTEGFRTNKTIGWC
        AKFLDGWVIFVDPA+PREPR P Q +   P S  GF TNKTIGWC
Subjt:  AKFLDGWVIFVDPAKPREPRPPPQPQ---PESTEGFRTNKTIGWC

AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein6.8e-1950.51Show/hide
Query:  APKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP
        A KLF+ GLS  TT+  L EAFS  GQ+VEA+++ DR S RSKGFGFVT+A+ +EA+KA  E N + L+G  IFVD AK ++           R PP P
Subjt:  APKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP

AT5G54580.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.7e-2358.62Show/hide
Query:  LFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPQ
        LFVSGLS+ TT + L+ AF+ FG++ +AKV+TDR SG SKGFGFV YAT+E++ K    M+ KFLDGWVIF + A+PRE     QPQ
Subjt:  LFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTCGCTTCTGCCTTTCGACGAGTTCTCACTGGATCTTCCCTCACTTCGTCTTCTCTTCACCAATTGACTTCGTTTCGTTTCAATTCCACTCTCACAGCGCCGAA
ACTCTTCGTCAGTGGTCTTTCAAGACTAACTACAGATGATAAGCTGAAGGAGGCCTTTTCTCCTTTTGGCCAACTTGTTGAAGCAAAAGTTATTACAGATCGAGCCTCTG
GACGATCGAAGGGCTTCGGTTTTGTTACTTACGCAACCATAGAGGAAGCAGAGAAGGCCAGAGAAGAAATGAACGCCAAATTCCTGGATGGATGGGTTATTTTTGTTGAC
CCTGCCAAACCAAGGGAGCCTAGACCGCCTCCGCAGCCACAGCCCGAGTCGACAGAAGGTTTCAGAACAAATAAGACAATCGGTTGGTGTGGTTAA
mRNA sequenceShow/hide mRNA sequence
CTTGTTAGTAATTTAAAATTCTTTATAAAGCCTTCAATTCAACGCAAATTTATAAATGTCGAATGTATTATAAACATCTAACATAATGATCATAATGCATTTGTAAGAAG
GTTCAGAAGAATTTTAAGAAATATAATATAATATAATAAATCGAAAATTATAGGAATTAAAATAAGATTTAAATAGTTTCTAAAAAGAAAAAGAAAAAGACTTAAATATT
GGTGAACGAAGGACAAAACTCACCCGCCACTCGGTGGAACTTCTGAACTCGGAGGTTTTGCGGCCATTGGAAGGGTTTTGTGAAGTCTTTTGGCTGCTCTTCTCTTTCCG
CTTCCAATGGCTTTCGCTTCTGCCTTTCGACGAGTTCTCACTGGATCTTCCCTCACTTCGTCTTCTCTTCACCAATTGACTTCGTTTCGTTTCAATTCCACTCTCACAGC
GCCGAAACTCTTCGTCAGTGGTCTTTCAAGACTAACTACAGATGATAAGCTGAAGGAGGCCTTTTCTCCTTTTGGCCAACTTGTTGAAGCAAAAGTTATTACAGATCGAG
CCTCTGGACGATCGAAGGGCTTCGGTTTTGTTACTTACGCAACCATAGAGGAAGCAGAGAAGGCCAGAGAAGAAATGAACGCCAAATTCCTGGATGGATGGGTTATTTTT
GTTGACCCTGCCAAACCAAGGGAGCCTAGACCGCCTCCGCAGCCACAGCCCGAGTCGACAGAAGGTTTCAGAACAAATAAGACAATCGGTTGGTGTGGTTAATTATTGTT
TGGCATTCTAGCATAGATTTTGTATCTCCACATTTACTCATCCAATTATTCTAGATGGATTCAAGAGCTTGGATAGATGAAGAACAGGGTTTTCAATCCAACCAGGAAAT
AGCCTCATCATTTTTGTTCTCTGAGGATTTTCTCATATTTATATGCTAAACCTGAATTAAACTTTGATTTCTTTTTTTTCATTGTTTTCTTTTCTTTTGAATTCCTTTTC
TCTTGTTCTTCTTTAGGCTTGTTTTACCATTCTATTCTATACTGTTTTCTTATGCTCTGTATTTTGTTGGTCTTATTTACTTATAGTCTATTTGTCTCGCAACCTATTAT
TGAAATTTTCATTTACCATTTCAA
Protein sequenceShow/hide protein sequence
MAFASAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVD
PAKPREPRPPPQPQPESTEGFRTNKTIGWCG