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Lcy06g023030 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy06g023030
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr06:47758567..47763407
RNA-Seq ExpressionLcy06g023030
SyntenyLcy06g023030
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4267113.1 unnamed protein product [Prunus armeniaca]2.5e-0646.27Show/hide
Query:  HAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLI
        HA+WK PP   +K+NVD +W+  F +GGVG  LRDS G  +  G  +   R S   +EA+AVL+GL+
Subjt:  HAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLI

KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]1.2e-0847.69Show/hide
Query:  LSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLISILSVAD
        LS KLN  ASW+++  KGGV W++ DS GSSIC+  K +  +W +K LE KA++EGL + L + +
Subjt:  LSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLISILSVAD

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]7.8e-0839.02Show/hide
Query:  KNLASHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLISILSVADLHP
        K L +   W+PPP     LN DASW+D   +GG+GWI+R   G  +  G + +    ++K LEA A+LEGL ++ ++  L P
Subjt:  KNLASHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLISILSVADLHP

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]3.3e-0638.37Show/hide
Query:  KSSGKNQPTVKNLASH--AIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLISI
        KS+ K+   ++ +  +  A WKPP   S KLN DA+W      GG+GWILRD  G  I    + +    +I  LE  A+ EGL +I
Subjt:  KSSGKNQPTVKNLASH--AIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLISI

XP_024012275.1 uncharacterized protein LOC112086773 [Eutrema salsugineum]2.5e-0639.76Show/hide
Query:  TVKNLA---SHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLISILSVA
        TVK L+   S + W+PPPD  LK NVD + +D  R+ G+GWILRDS+G ++  G K +    S+   EA+A+   ++ I +++
Subjt:  TVKNLA---SHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLISILSVA

TrEMBL top hitse value%identityAlignment
A0A1J3C7A8 Putative ribonuclease H protein (Fragment)3.2e-0733.66Show/hide
Query:  YQEISRIISSKIDFPKVVSRTYLPKSSGKNQPTVKNLASHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKA
        Y  +  ++ ++ D  + V  T   KS      +  N +S   WKPPP   LK NVD +W+++  + G+GW+LRDS G  I +G ++  N  S  A E +A
Subjt:  YQEISRIISSKIDFPKVVSRTYLPKSSGKNQPTVKNLASHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKA

Query:  V
        +
Subjt:  V

A0A5E4EI29 PREDICTED: Reverse mRNAase zinc-binding domain4.6e-0642.67Show/hide
Query:  PTVKNLASHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLI
        PT      HA+WK PP   +K+NVD +W++   +GGVG  L DS G  +  G  +   R S   +EA+AVLEGL+
Subjt:  PTVKNLASHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLI

A0A6J1DNV9 uncharacterized protein LOC1110224033.8e-0839.02Show/hide
Query:  KNLASHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLISILSVADLHP
        K L +   W+PPP     LN DASW+D   +GG+GWI+R   G  +  G + +    ++K LEA A+LEGL ++ ++  L P
Subjt:  KNLASHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLISILSVADLHP

A0A6J1DSV1 uncharacterized protein LOC1110236081.6e-0638.37Show/hide
Query:  KSSGKNQPTVKNLASH--AIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLISI
        KS+ K+   ++ +  +  A WKPP   S KLN DA+W      GG+GWILRD  G  I    + +    +I  LE  A+ EGL +I
Subjt:  KSSGKNQPTVKNLASH--AIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLISI

A0A6J5TTA1 RNase H domain-containing protein1.2e-0646.27Show/hide
Query:  HAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLI
        HA+WK PP   +K+NVD +W+  F +GGVG  LRDS G  +  G  +   R S   +EA+AVL+GL+
Subjt:  HAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.6e-0434.92Show/hide
Query:  WKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGL
        WK PPD  +K N DA +N Q       WI+R+  G +   G  ++ N  +    E KA+L  L
Subjt:  WKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGL

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.0e-0533.9Show/hide
Query:  WKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAV
        WK PP   +K N DA+W  +  + G+GWILR+ SG  + +G + +    ++   E +A+
Subjt:  WKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAV

AT3G25270.1 Ribonuclease H-like superfamily protein9.6e-0436.54Show/hide
Query:  SSGKNQPTVKNLASHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSG
        SS   QPT+    +   W+ PP   +K N D ++N Q R    GW++RD +G
Subjt:  SSGKNQPTVKNLASHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSG

AT4G29090.1 Ribonuclease H-like superfamily protein7.1e-0731.51Show/hide
Query:  NLASHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLISI
        N +S   W+PPP   +K N DA+WN    + G+GW+LR+  G    +G + +    S+   E +A+   ++S+
Subjt:  NLASHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLISI

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.6e-0535Show/hide
Query:  WKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVL
        W PP    LK N DAS +++    G+GWILR+S G+ I  G  +   R + +  E   ++
Subjt:  WKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGCGACTCCAATCGTTGGAGGAACACCAAAACAGAAAACTCAAGAAAATAAAAGAGGAAATTTCTGGGGTAGAGGACGAGGTAGAAGAGGTGCATACCAATTCCA
AAACAACAGACAAAACCAGAAATACAATGATGAAAAAGAGGAAACATGGAGACGAAGAGATCAAAGTGGAAAAAGCAACGAAGAAAACGTCGGCGTCCTGAGACCGGAAA
ATTCCACAGAAGGCAGGAGCTCGCCGGAGAAGGAGACCGTTGGAAAATCCCAAGGCCAGCCAACGGCTAGTGAAGTGTCAGAGCAAAGCAGAATGAAAACAGGAAAAGCG
GTGATGGAGACAAATTGTCAGGCGGTGGAAATAGGAAAAATCAGGGATCTAGGACAAAAGTACGTGCCAGACAAAAAAGCTACAAAAGGAATAGTATTAAAGGACCAGAC
CAGTGAAATGATTACTAGAAAAGAATGGGCAAGTGGAACAGAAAAGGACAAAAAAGGCCCAAGGGCCAAGAATAGCCAATCTGGGCTGGAGAAGGAAATCAATAAAGCCC
TGGAAAGAGAAAAACACCTAGAGGAAAAAGAAATATCAGAGATGGACACAAACCAAGACAGCCTTATGTTCAGAGGAGAAGGTAAAAATGTTCGAACATGGAAAAGGCGT
GCTAGAGTGGAGAATAACAGTGTTGATTCTGAAAGCTTAAAAGGAGCTACGATAGCAAATGAGAGTAAACCAATCTATCAAGAAATCTCCAGAATTATTAGCAGCAAAAT
AGATTTTCCAAAAGTTGTTTCGAGAACCTACCTGCCGAAGTCGAGTGGAAAAAATCAGCCCACAGTTAAGAACCTTGCGAGTCACGCGATTTGGAAGCCTCCCCCGGATT
TATCGCTAAAGCTGAATGTAGATGCCTCCTGGAACGACCAATTCAGAAAAGGTGGCGTCGGTTGGATCCTCCGTGACTCCTCAGGGTCTTCGATCTGTGTGGGCTTCAAG
CGCATGCATAATAGGTGGTCAATCAAAGCGTTGGAGGCGAAGGCAGTCTTGGAAGGCCTGATTAGCATCCTTTCAGTTGCGGATCTTCATCCCTCTCTAAGCTCCATATC
TCTGAGATCTCAAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGCGACTCCAATCGTTGGAGGAACACCAAAACAGAAAACTCAAGAAAATAAAAGAGGAAATTTCTGGGGTAGAGGACGAGGTAGAAGAGGTGCATACCAATTCCA
AAACAACAGACAAAACCAGAAATACAATGATGAAAAAGAGGAAACATGGAGACGAAGAGATCAAAGTGGAAAAAGCAACGAAGAAAACGTCGGCGTCCTGAGACCGGAAA
ATTCCACAGAAGGCAGGAGCTCGCCGGAGAAGGAGACCGTTGGAAAATCCCAAGGCCAGCCAACGGCTAGTGAAGTGTCAGAGCAAAGCAGAATGAAAACAGGAAAAGCG
GTGATGGAGACAAATTGTCAGGCGGTGGAAATAGGAAAAATCAGGGATCTAGGACAAAAGTACGTGCCAGACAAAAAAGCTACAAAAGGAATAGTATTAAAGGACCAGAC
CAGTGAAATGATTACTAGAAAAGAATGGGCAAGTGGAACAGAAAAGGACAAAAAAGGCCCAAGGGCCAAGAATAGCCAATCTGGGCTGGAGAAGGAAATCAATAAAGCCC
TGGAAAGAGAAAAACACCTAGAGGAAAAAGAAATATCAGAGATGGACACAAACCAAGACAGCCTTATGTTCAGAGGAGAAGGTAAAAATGTTCGAACATGGAAAAGGCGT
GCTAGAGTGGAGAATAACAGTGTTGATTCTGAAAGCTTAAAAGGAGCTACGATAGCAAATGAGAGTAAACCAATCTATCAAGAAATCTCCAGAATTATTAGCAGCAAAAT
AGATTTTCCAAAAGTTGTTTCGAGAACCTACCTGCCGAAGTCGAGTGGAAAAAATCAGCCCACAGTTAAGAACCTTGCGAGTCACGCGATTTGGAAGCCTCCCCCGGATT
TATCGCTAAAGCTGAATGTAGATGCCTCCTGGAACGACCAATTCAGAAAAGGTGGCGTCGGTTGGATCCTCCGTGACTCCTCAGGGTCTTCGATCTGTGTGGGCTTCAAG
CGCATGCATAATAGGTGGTCAATCAAAGCGTTGGAGGCGAAGGCAGTCTTGGAAGGCCTGATTAGCATCCTTTCAGTTGCGGATCTTCATCCCTCTCTAAGCTCCATATC
TCTGAGATCTCAAGATTGA
Protein sequenceShow/hide protein sequence
MRATPIVGGTPKQKTQENKRGNFWGRGRGRRGAYQFQNNRQNQKYNDEKEETWRRRDQSGKSNEENVGVLRPENSTEGRSSPEKETVGKSQGQPTASEVSEQSRMKTGKA
VMETNCQAVEIGKIRDLGQKYVPDKKATKGIVLKDQTSEMITRKEWASGTEKDKKGPRAKNSQSGLEKEINKALEREKHLEEKEISEMDTNQDSLMFRGEGKNVRTWKRR
ARVENNSVDSESLKGATIANESKPIYQEISRIISSKIDFPKVVSRTYLPKSSGKNQPTVKNLASHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFK
RMHNRWSIKALEAKAVLEGLISILSVADLHPSLSSISLRSQD