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Lcy07g003680 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy07g003680
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr07:16664228..16666647
RNA-Seq ExpressionLcy07g003680
SyntenyLcy07g003680
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0071704 - organic substance metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7810842.1 uncharacterized protein G2W53_031818 [Senna tora]2.1e-0834.65Show/hide
Query:  PLLAELSAIQEGLKRSISMGCTNLKVESDCELAIKFILKKAEVWGEVEAMVESIMELFPFFSDISFTFLPRQCNKAAHVSAKIAKVMRCTETWIDHVPSW
        P L E  A++EGLK ++ +GC ++ VE D  L +  +    +    + A+   I+     F  +SF ++PR CN  A   +KIAKV R    W D VP +
Subjt:  PLLAELSAIQEGLKRSISMGCTNLKVESDCELAIKFILKKAEVWGEVEAMVESIMELFPFFSDISFTFLPRQCNKAAHVSAKIAKVMRCTETWIDHVPSW

Query:  L
        L
Subjt:  L

KAF7827257.1 putative RNA-directed DNA polymerase [Senna tora]1.7e-0734.34Show/hide
Query:  SPLLAELSAIQEGLKRSISMGCTNLKVESDCELAIKFILKKAEVWGEVEAMVESIMELFPFFSDISFTFLPRQCNKAAHVSAKIAKVMRCTETWIDHVP
        SP++ E  AI+ G++ ++S G  ++ VESD +L ++F+         +  +   I  L  FF++ SF+++PR CNKAAH     AK       W+D VP
Subjt:  SPLLAELSAIQEGLKRSISMGCTNLKVESDCELAIKFILKKAEVWGEVEAMVESIMELFPFFSDISFTFLPRQCNKAAHVSAKIAKVMRCTETWIDHVP

KAF7845416.1 uncharacterized protein G2W53_002321 [Senna tora]1.3e-0734.65Show/hide
Query:  PLLAELSAIQEGLKRSISMGCTNLKVESDCELAIKFILKKAEVWGEVEAMVESIMELFPFFSDISFTFLPRQCNKAAHVSAKIAKVMRCTETWIDHVPSW
        P+L E  AI+ GLK +  +GCT++ VESD ++AI+ +    +    + A+   I+     F  +SF ++PR CN  A   ++ A+V R    W D VP +
Subjt:  PLLAELSAIQEGLKRSISMGCTNLKVESDCELAIKFILKKAEVWGEVEAMVESIMELFPFFSDISFTFLPRQCNKAAHVSAKIAKVMRCTETWIDHVPSW

Query:  L
        L
Subjt:  L

KMS97072.1 hypothetical protein BVRB_7g179330 [Beta vulgaris subsp. vulgaris]1.1e-0934.29Show/hide
Query:  AELSAIQEGLKRSISMGCTNLKVESDCELAIKFILKKAEVWGEVEAMVESIMELFPFFSDISFTFLPRQCNKAAHVSAKIAKVMRCTETWIDHVPSWLCK
        AE +A+    + +I+ G +N+ +ESD ++ I  I  + +  G+++AM+E ++ L P F  I F+F  R+CN+ AH  AK A    C E W+   PSW+  
Subjt:  AELSAIQEGLKRSISMGCTNLKVESDCELAIKFILKKAEVWGEVEAMVESIMELFPFFSDISFTFLPRQCNKAAHVSAKIAKVMRCTETWIDHVPSWLCK

Query:  KMTKD
         +  D
Subjt:  KMTKD

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]5.4e-0939.64Show/hide
Query:  MSPLLAELSAIQEGLKRSISMGCTNLKVESDCELAIKFILKKAEVWGEVEAMVESIMELFPFFSDISFTFLPRQCNKAAHVSAKIAKVM-RCTETWIDHV
        +SPLLAE+  I EGLK + +   T+L+VESD  LAI+ I  +    G+ +  V  I  L   F+ ISF+   RQCN+AAH  AK        T  W+ + 
Subjt:  MSPLLAELSAIQEGLKRSISMGCTNLKVESDCELAIKFILKKAEVWGEVEAMVESIMELFPFFSDISFTFLPRQCNKAAHVSAKIAKVM-RCTETWIDHV

Query:  PSWLCKKMTKD
        P+WL   + +D
Subjt:  PSWLCKKMTKD

TrEMBL top hitse value%identityAlignment
A0A0J8BAU9 Uncharacterized protein5.3e-1034.29Show/hide
Query:  AELSAIQEGLKRSISMGCTNLKVESDCELAIKFILKKAEVWGEVEAMVESIMELFPFFSDISFTFLPRQCNKAAHVSAKIAKVMRCTETWIDHVPSWLCK
        AE +A+    + +I+ G +N+ +ESD ++ I  I  + +  G+++AM+E ++ L P F  I F+F  R+CN+ AH  AK A    C E W+   PSW+  
Subjt:  AELSAIQEGLKRSISMGCTNLKVESDCELAIKFILKKAEVWGEVEAMVESIMELFPFFSDISFTFLPRQCNKAAHVSAKIAKVMRCTETWIDHVPSWLCK

Query:  KMTKD
         +  D
Subjt:  KMTKD

A0A6J1DX30 uncharacterized protein LOC1110248742.6e-0939.64Show/hide
Query:  MSPLLAELSAIQEGLKRSISMGCTNLKVESDCELAIKFILKKAEVWGEVEAMVESIMELFPFFSDISFTFLPRQCNKAAHVSAKIAKVM-RCTETWIDHV
        +SPLLAE+  I EGLK + +   T+L+VESD  LAI+ I  +    G+ +  V  I  L   F+ ISF+   RQCN+AAH  AK        T  W+ + 
Subjt:  MSPLLAELSAIQEGLKRSISMGCTNLKVESDCELAIKFILKKAEVWGEVEAMVESIMELFPFFSDISFTFLPRQCNKAAHVSAKIAKVM-RCTETWIDHV

Query:  PSWLCKKMTKD
        P+WL   + +D
Subjt:  PSWLCKKMTKD

A0A6J5UE59 Reverse transcriptase domain-containing protein1.4e-0735.34Show/hide
Query:  SPLLAELSAIQEGLKRSISMGCTNLKVESDCELAIKFILKKAEVWGEVEAMVESIMELFPFFSDISFTFLPRQCNKAAHVSAKIAKVMRCTETWIDHV-P
        S ++ EL AI+  L    +   T++ VESD +  I  +  +A V  ++E +V  I +L    S +SF F PR CN+AAH  A  A        W DH+ P
Subjt:  SPLLAELSAIQEGLKRSISMGCTNLKVESDCELAIKFILKKAEVWGEVEAMVESIMELFPFFSDISFTFLPRQCNKAAHVSAKIAKVMRCTETWIDHV-P

Query:  SWLCKKMTKDPLKHTR
         WL   +T D   H R
Subjt:  SWLCKKMTKDPLKHTR

A0A6J5UF50 Uncharacterized protein1.4e-0735.34Show/hide
Query:  SPLLAELSAIQEGLKRSISMGCTNLKVESDCELAIKFILKKAEVWGEVEAMVESIMELFPFFSDISFTFLPRQCNKAAHVSAKIAKVMRCTETWIDHV-P
        S ++ EL AI+  L    +   T++ VESD +  I  +  +A V  ++E +V  I +L    S +SF F PR CN+AAH  A  A        W DH+ P
Subjt:  SPLLAELSAIQEGLKRSISMGCTNLKVESDCELAIKFILKKAEVWGEVEAMVESIMELFPFFSDISFTFLPRQCNKAAHVSAKIAKVMRCTETWIDHV-P

Query:  SWLCKKMTKDPLKHTR
         WL   +T D   H R
Subjt:  SWLCKKMTKDPLKHTR

A0A6J5WMT2 Uncharacterized protein4.2e-0731.86Show/hide
Query:  SPLLAELSAIQEGLKRSISMGCTNLKVESDCELAIKFILK--KAEVWGEVEAMVESIMELFPFFSDISFTFLPRQCNKAAHVSAKIAKVMRCTETWIDHV
        SPL+AE+ A++ GL R+  +   N+ VESD ++AI  + K   +  W E+  +++ I  L  +F+++++ ++PR+ N++A   A +A+   C E+W+   
Subjt:  SPLLAELSAIQEGLKRSISMGCTNLKVESDCELAIKFILK--KAEVWGEVEAMVESIMELFPFFSDISFTFLPRQCNKAAHVSAKIAKVMRCTETWIDHV

Query:  PSWLCKKMTKDPL
        PS L   ++ D L
Subjt:  PSWLCKKMTKDPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCCTTTACTCGCAGAGCTAAGTGCTATTCAAGAGGGATTGAAAAGATCAATTTCGATGGGTTGTACTAATCTCAAGGTGGAATCGGATTGTGAGCTGGCG
ATTAAATTCATTTTGAAGAAGGCAGAGGTCTGGGGAGAGGTGGAAGCCATGGTGGAATCGATAATGGAATTATTCCCTTTCTTTAGTGATATTTCATTTACTTTT
TTGCCCAGACAATGTAATAAAGCTGCTCATGTGTCAGCAAAAATAGCCAAGGTTATGAGGTGTACTGAAACTTGGATTGACCATGTCCCAAGTTGGCTCTGTAAG
AAAATGACTAAAGATCCACTGAAGCACACTCGTAGCTTTCCGACTAGACTTCCCGACGGCCACAAAAACCTCATCATCACCGGCGCCGGTGCCGCCGTCTTCAGT
GGTGTAATCTACTGTCAACATGGGATTAGACCCATTAACGAAATTGGGTCAGCAGAAAAGCTCGAAAACAGGACAGGGGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTCCTTTACTCGCAGAGCTAAGTGCTATTCAAGAGGGATTGAAAAGATCAATTTCGATGGGTTGTACTAATCTCAAGGTGGAATCGGATTGTGAGCTGGCG
ATTAAATTCATTTTGAAGAAGGCAGAGGTCTGGGGAGAGGTGGAAGCCATGGTGGAATCGATAATGGAATTATTCCCTTTCTTTAGTGATATTTCATTTACTTTT
TTGCCCAGACAATGTAATAAAGCTGCTCATGTGTCAGCAAAAATAGCCAAGGTTATGAGGTGTACTGAAACTTGGATTGACCATGTCCCAAGTTGGCTCTGTAAG
AAAATGACTAAAGATCCACTGAAGCACACTCGTAGCTTTCCGACTAGACTTCCCGACGGCCACAAAAACCTCATCATCACCGGCGCCGGTGCCGCCGTCTTCAGT
GGTGTAATCTACTGTCAACATGGGATTAGACCCATTAACGAAATTGGGTCAGCAGAAAAGCTCGAAAACAGGACAGGGGCATAA
Protein sequenceShow/hide protein sequence
MSPLLAELSAIQEGLKRSISMGCTNLKVESDCELAIKFILKKAEVWGEVEAMVESIMELFPFFSDISFTFLPRQCNKAAHVSAKIAKVMRCTETWIDHVPSWLCK
KMTKDPLKHTRSFPTRLPDGHKNLIITGAGAAVFSGVIYCQHGIRPINEIGSAEKLENRTGA