; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy07g005160 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy07g005160
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionGRF-type domain-containing protein
Genome locationChr07:27166932..27167416
RNA-Seq ExpressionLcy07g005160
SyntenyLcy07g005160
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR010666 - Zinc finger, GRF-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD1823597.1 unnamed protein product [Ananas comosus var. bracteatus]6.5e-1055.38Show/hide
Query:  CYSELRARLITSWTKRKPGRKFYGCSGYKGNGSSCGFFDWCDPEVTERNKELINKLRDEVGRLKK
        C+  L+A   TS T   PGR+FYGC  YK NG  CGFF W DPE+ ER KE I +L +++GRLKK
Subjt:  CYSELRARLITSWTKRKPGRKFYGCSGYKGNGSSCGFFDWCDPEVTERNKELINKLRDEVGRLKK

KAG6468846.1 hypothetical protein ZIOFF_073539 [Zingiber officinale]7.2e-0947.89Show/hide
Query:  YSELRARLITSWTKRKPGRKFYGCSGYKGNGSSCGFFDWCDPEVTERNKELINKLRDEVGRLKKIAQKLRR
        Y  LRA L TSWT+  PGR+F+ CS Y+  G  CGFF W DPE++ER+K +IN+L+    +LK    +L++
Subjt:  YSELRARLITSWTKRKPGRKFYGCSGYKGNGSSCGFFDWCDPEVTERNKELINKLRDEVGRLKKIAQKLRR

KAG6527582.1 hypothetical protein ZIOFF_009697 [Zingiber officinale]9.4e-0947.22Show/hide
Query:  CYSELRARLITSWTKRKPGRKFYGCSGYKGNGSSCGFFDWCDPEVTERNKELINKLRDEVGRLKKIAQKLRR
        CY  LRA L TSWT+  P R+F+ C  Y+  G  CGFF W DPEV+ER+K +IN+L+    +LK    +L++
Subjt:  CYSELRARLITSWTKRKPGRKFYGCSGYKGNGSSCGFFDWCDPEVTERNKELINKLRDEVGRLKKIAQKLRR

RZB70552.1 hypothetical protein D0Y65_035499 [Glycine soja]5.5e-0942.86Show/hide
Query:  DRSSESVRVYGGGTKNPTYCYSELRARLITSWTKRKPGRKFYGCSGYKGNGS-SCGFFDWCDPEVTERNKELINKLRDEVGRLK
        +RSS S   Y    ++  +C   + A L+TSWT+  PGR+FYGC  YK  G+  C FF W DP    R K++I  L  EV  LK
Subjt:  DRSSESVRVYGGGTKNPTYCYSELRARLITSWTKRKPGRKFYGCSGYKGNGS-SCGFFDWCDPEVTERNKELINKLRDEVGRLK

XP_042445187.1 uncharacterized protein LOC122030096 [Zingiber officinale]7.2e-0939.29Show/hide
Query:  SREMGQKVPKITMDNFDRSSES-----VRVYGGGTKNPTYCYSELRARLITSWTKRKPGRKFYGCSGYKGNGSSCGFFDWCDPEVTERNKELIN------
        SR  G+   +I+M+    S+ S     +    G T N + CY  LRA L TSW +  PGR+F+ C  ++  G  CGFF W DPE++ER K +IN      
Subjt:  SREMGQKVPKITMDNFDRSSES-----VRVYGGGTKNPTYCYSELRARLITSWTKRKPGRKFYGCSGYKGNGSSCGFFDWCDPEVTERNKELIN------

Query:  -KLRDEVGRLKK
         KL+ E+  LKK
Subjt:  -KLRDEVGRLKK

TrEMBL top hitse value%identityAlignment
A0A445HAE1 GRF-type domain-containing protein2.7e-0942.86Show/hide
Query:  DRSSESVRVYGGGTKNPTYCYSELRARLITSWTKRKPGRKFYGCSGYKGNGS-SCGFFDWCDPEVTERNKELINKLRDEVGRLK
        +RSS S   Y    ++  +C   + A L+TSWT+  PGR+FYGC  YK  G+  C FF W DP    R K++I  L  EV  LK
Subjt:  DRSSESVRVYGGGTKNPTYCYSELRARLITSWTKRKPGRKFYGCSGYKGNGS-SCGFFDWCDPEVTERNKELINKLRDEVGRLK

A0A445ILI1 GRF-type domain-containing protein1.3e-0842.86Show/hide
Query:  DRSSESVRVYGGGTKNPTYCYSELRARLITSWTKRKPGRKFYGCSGYKGNGS-SCGFFDWCDPEVTERNKELINKLRDEVGRLK
        +RSS S   Y    ++  +C   + A L+TSWT+  PGR+FYGC  YK  G+  C FF W DP    R K++I  L  EV  LK
Subjt:  DRSSESVRVYGGGTKNPTYCYSELRARLITSWTKRKPGRKFYGCSGYKGNGS-SCGFFDWCDPEVTERNKELINKLRDEVGRLK

A0A6P5F2H3 uncharacterized protein LOC1097116087.8e-0952.17Show/hide
Query:  NPTYCYSELRARLITSWTKRKPGRKFYGCSGYKGNGSSCGFFDWCDPEVTERNKELINKLRDEVGRLKK
        NP  C+  L+A   TS T   PGR+FYGC  YK N  SC FF W DPE+ ER KE I +L +++G LKK
Subjt:  NPTYCYSELRARLITSWTKRKPGRKFYGCSGYKGNGSSCGFFDWCDPEVTERNKELINKLRDEVGRLKK

A0A6V7NYI1 GRF-type domain-containing protein3.2e-1055.38Show/hide
Query:  CYSELRARLITSWTKRKPGRKFYGCSGYKGNGSSCGFFDWCDPEVTERNKELINKLRDEVGRLKK
        C+  L+A   TS T   PGR+FYGC  YK NG  CGFF W DPE+ ER KE I +L +++GRLKK
Subjt:  CYSELRARLITSWTKRKPGRKFYGCSGYKGNGSSCGFFDWCDPEVTERNKELINKLRDEVGRLKK

A0A6V7P503 GRF-type domain-containing protein4.6e-0953.85Show/hide
Query:  CYSELRARLITSWTKRKPGRKFYGCSGYKGNGSSCGFFDWCDPEVTERNKELINKLRDEVGRLKK
        C+  L+A   TS T    GR+FYGC  YK NG  CGFF W DPE+ ER KE I +L +++GRLKK
Subjt:  CYSELRARLITSWTKRKPGRKFYGCSGYKGNGSSCGFFDWCDPEVTERNKELINKLRDEVGRLKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G42860.1 zinc knuckle (CCHC-type) family protein3.9e-0555.88Show/hide
Query:  LITSWTKRKPGRKFYGCSGYKGNGSSCGFFDWCD
        ++TS T + PGRKFY C   + NG  CGFF WCD
Subjt:  LITSWTKRKPGRKFYGCSGYKGNGSSCGFFDWCD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACGAGAAATGGGACAGAAAGTTCCAAAAATTACAATGGACAACTTTGATAGAAGTTCAGAGTCCGTAAGAGTCTATGGCGGTGGAACTAAGAACCCTACGTACTG
TTACTCTGAGTTACGAGCTCGATTAATAACTTCATGGACGAAGAGGAAGCCTGGACGAAAATTCTATGGATGTTCTGGTTACAAGGGGAATGGCTCGAGTTGTGGGTTTT
TTGATTGGTGTGATCCAGAAGTAACAGAACGCAACAAAGAATTGATTAACAAACTAAGAGATGAAGTTGGTCGATTGAAGAAGATTGCACAAAAATTGCGCCGATTGGAG
TGGTTGTATCGTGTAATAATTGTAGTATTGGTGGGCACTATTGTGTATTTGAGTTTTGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCACGAGAAATGGGACAGAAAGTTCCAAAAATTACAATGGACAACTTTGATAGAAGTTCAGAGTCCGTAAGAGTCTATGGCGGTGGAACTAAGAACCCTACGTACTG
TTACTCTGAGTTACGAGCTCGATTAATAACTTCATGGACGAAGAGGAAGCCTGGACGAAAATTCTATGGATGTTCTGGTTACAAGGGGAATGGCTCGAGTTGTGGGTTTT
TTGATTGGTGTGATCCAGAAGTAACAGAACGCAACAAAGAATTGATTAACAAACTAAGAGATGAAGTTGGTCGATTGAAGAAGATTGCACAAAAATTGCGCCGATTGGAG
TGGTTGTATCGTGTAATAATTGTAGTATTGGTGGGCACTATTGTGTATTTGAGTTTTGATTAA
Protein sequenceShow/hide protein sequence
MSREMGQKVPKITMDNFDRSSESVRVYGGGTKNPTYCYSELRARLITSWTKRKPGRKFYGCSGYKGNGSSCGFFDWCDPEVTERNKELINKLRDEVGRLKKIAQKLRRLE
WLYRVIIVVLVGTIVYLSFD