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Lcy07g005190 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy07g005190
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionTubulin beta chain
Genome locationChr07:27711397..27713819
RNA-Seq ExpressionLcy07g005190
SyntenyLcy07g005190
Gene Ontology termsNA
InterPro domainsIPR023123 - Tubulin, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7020205.1 SPBC2A9.03, partial [Cucurbita argyrosperma subsp. argyrosperma]9.2e-0585.71Show/hide
Query:  CLEVEKGNNFYDIQFNTRLVKSTIVHLE
        CL+VEKGNNFYD QFNTRLVKSTIVH +
Subjt:  CLEVEKGNNFYDIQFNTRLVKSTIVHLE

KHG14898.1 putative WD repeat-containing C2A9.03 [Gossypium arboreum]7.0e-0546.03Show/hide
Query:  CLEVEKGNNFYDIQFNTRLVKSTIVHLEGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI
        CL+VEKG  FYD QFNTRLVKSTIVH +    L  +   R+ +S  V +  +       G+LI
Subjt:  CLEVEKGNNFYDIQFNTRLVKSTIVHLEGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI

XP_022951510.1 uncharacterized WD repeat-containing protein C2A9.03-like isoform X1 [Cucurbita moschata]9.2e-0585.71Show/hide
Query:  CLEVEKGNNFYDIQFNTRLVKSTIVHLE
        CL+VEKGNNFYD QFNTRLVKSTIVH +
Subjt:  CLEVEKGNNFYDIQFNTRLVKSTIVHLE

XP_023001899.1 uncharacterized WD repeat-containing protein C2A9.03-like isoform X1 [Cucurbita maxima]9.2e-0585.71Show/hide
Query:  CLEVEKGNNFYDIQFNTRLVKSTIVHLE
        CL+VEKGNNFYD QFNTRLVKSTIVH +
Subjt:  CLEVEKGNNFYDIQFNTRLVKSTIVHLE

XP_023537283.1 uncharacterized WD repeat-containing protein C2A9.03-like isoform X1 [Cucurbita pepo subsp. pepo]9.2e-0585.71Show/hide
Query:  CLEVEKGNNFYDIQFNTRLVKSTIVHLE
        CL+VEKGNNFYD QFNTRLVKSTIVH +
Subjt:  CLEVEKGNNFYDIQFNTRLVKSTIVHLE

TrEMBL top hitse value%identityAlignment
A0A059BKI3 WD_REPEATS_REGION domain-containing protein5.8e-0543.94Show/hide
Query:  CLEVEKGNNFYDIQFNTRLVKSTIVHLEGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLIHQR
        CL+VEKG NFYD QFNTRLVKSTIVH        ++L   L  +       ++  +V+H   +H+R
Subjt:  CLEVEKGNNFYDIQFNTRLVKSTIVHLEGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLIHQR

A0A0B0NK45 Putative WD repeat-containing C2A9.033.4e-0546.03Show/hide
Query:  CLEVEKGNNFYDIQFNTRLVKSTIVHLEGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI
        CL+VEKG  FYD QFNTRLVKSTIVH +    L  +   R+ +S  V +  +       G+LI
Subjt:  CLEVEKGNNFYDIQFNTRLVKSTIVHLEGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI

A0A6A4LA59 WD_REPEATS_REGION domain-containing protein (Fragment)5.8e-0564.1Show/hide
Query:  CLEVEKGNNFYDIQFNTRLVKSTIVHLEGLESLDYELHC
        C +VEKG+NFYD QFNTRLVKSTIVH +    +  EL C
Subjt:  CLEVEKGNNFYDIQFNTRLVKSTIVHLEGLESLDYELHC

A0A6J1GIZ9 uncharacterized WD repeat-containing protein C2A9.03-like isoform X14.5e-0585.71Show/hide
Query:  CLEVEKGNNFYDIQFNTRLVKSTIVHLE
        CL+VEKGNNFYD QFNTRLVKSTIVH +
Subjt:  CLEVEKGNNFYDIQFNTRLVKSTIVHLE

A0A6J1KNX6 uncharacterized WD repeat-containing protein C2A9.03-like isoform X14.5e-0585.71Show/hide
Query:  CLEVEKGNNFYDIQFNTRLVKSTIVHLE
        CL+VEKGNNFYD QFNTRLVKSTIVH +
Subjt:  CLEVEKGNNFYDIQFNTRLVKSTIVHLE

SwissProt top hitse value%identityAlignment
P18025 Tubulin beta-1 chain7.3e-0532.61Show/hide
Query:  LEVEKGNNFYDIQFNTRLVKSTIVHL--EGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI---HQRGGMDEMEFAEAESNMNDLLSKY
        L V+  N+ Y +++    VKST+  +   GL+     +     + +    V  +  A+         +   GMDEMEF EAESNMNDL+S+Y
Subjt:  LEVEKGNNFYDIQFNTRLVKSTIVHL--EGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI---HQRGGMDEMEFAEAESNMNDLLSKY

P29515 Tubulin beta-7 chain9.6e-0532.61Show/hide
Query:  LEVEKGNNFYDIQFNTRLVKSTIVHL--EGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI---HQRGGMDEMEFAEAESNMNDLLSKY
        L V+  N+ Y +++    VKST+  +   GL+     +     + +    V  +  A+         +   GMDEMEF EAESNMNDL+S+Y
Subjt:  LEVEKGNNFYDIQFNTRLVKSTIVHL--EGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI---HQRGGMDEMEFAEAESNMNDLLSKY

Q56YW9 Tubulin beta-2 chain9.6e-0532.61Show/hide
Query:  LEVEKGNNFYDIQFNTRLVKSTIVHL--EGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI---HQRGGMDEMEFAEAESNMNDLLSKY
        L V+  N+ Y +++    VKST+  +   GL+     +     + +    V  +  A+         +   GMDEMEF EAESNMNDL+S+Y
Subjt:  LEVEKGNNFYDIQFNTRLVKSTIVHL--EGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI---HQRGGMDEMEFAEAESNMNDLLSKY

Q8H7U1 Tubulin beta-2 chain9.6e-0532.61Show/hide
Query:  LEVEKGNNFYDIQFNTRLVKSTIVHL--EGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI---HQRGGMDEMEFAEAESNMNDLLSKY
        L V+  N+ Y +++    VKST+  +   GL+     +     + +    V  +  A+         +   GMDEMEF EAESNMNDL+S+Y
Subjt:  LEVEKGNNFYDIQFNTRLVKSTIVHL--EGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI---HQRGGMDEMEFAEAESNMNDLLSKY

Q9ASR0 Tubulin beta-3 chain9.6e-0532.61Show/hide
Query:  LEVEKGNNFYDIQFNTRLVKSTIVHL--EGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI---HQRGGMDEMEFAEAESNMNDLLSKY
        L V+  N+ Y +++    VKST+  +   GL+     +     + +    V  +  A+         +   GMDEMEF EAESNMNDL+S+Y
Subjt:  LEVEKGNNFYDIQFNTRLVKSTIVHL--EGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI---HQRGGMDEMEFAEAESNMNDLLSKY

Arabidopsis top hitse value%identityAlignment
AT1G78070.1 Transducin/WD40 repeat-like superfamily protein1.2e-0778.57Show/hide
Query:  CLEVEKGNNFYDIQFNTRLVKSTIVHLE
        CL+VEKG NFYD QFNTRLVKSTI H +
Subjt:  CLEVEKGNNFYDIQFNTRLVKSTIVHLE

AT2G29550.1 tubulin beta-7 chain6.8e-0632.61Show/hide
Query:  LEVEKGNNFYDIQFNTRLVKSTIVHL--EGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI---HQRGGMDEMEFAEAESNMNDLLSKY
        L V+  N+ Y +++    VKST+  +   GL+     +     + +    V  +  A+         +   GMDEMEF EAESNMNDL+S+Y
Subjt:  LEVEKGNNFYDIQFNTRLVKSTIVHL--EGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI---HQRGGMDEMEFAEAESNMNDLLSKY

AT5G23860.1 tubulin beta 81.2e-0531.52Show/hide
Query:  LEVEKGNNFYDIQFNTRLVKSTIVHL--EGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI---HQRGGMDEMEFAEAESNMNDLLSKY
        + V+  N+ Y +++    VKST+  +   GL+     +     + +    V  +  A+         +   GMDEMEF EAESNMNDL+S+Y
Subjt:  LEVEKGNNFYDIQFNTRLVKSTIVHL--EGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI---HQRGGMDEMEFAEAESNMNDLLSKY

AT5G62690.1 tubulin beta chain 26.8e-0632.61Show/hide
Query:  LEVEKGNNFYDIQFNTRLVKSTIVHL--EGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI---HQRGGMDEMEFAEAESNMNDLLSKY
        L V+  N+ Y +++    VKST+  +   GL+     +     + +    V  +  A+         +   GMDEMEF EAESNMNDL+S+Y
Subjt:  LEVEKGNNFYDIQFNTRLVKSTIVHL--EGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI---HQRGGMDEMEFAEAESNMNDLLSKY

AT5G62700.1 tubulin beta chain 36.8e-0632.61Show/hide
Query:  LEVEKGNNFYDIQFNTRLVKSTIVHL--EGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI---HQRGGMDEMEFAEAESNMNDLLSKY
        L V+  N+ Y +++    VKST+  +   GL+     +     + +    V  +  A+         +   GMDEMEF EAESNMNDL+S+Y
Subjt:  LEVEKGNNFYDIQFNTRLVKSTIVHL--EGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLI---HQRGGMDEMEFAEAESNMNDLLSKY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTATGGTGAACTCTTCAAATTTGCACGTGGGTGGCTATGGAGGTTTCATTCGTGGATGGAATTGCTTGGAAGTTGAAAAGGGGAACAATTTTTATGACATCCAGTT
CAATACTAGGCTTGTTAAATCAACCATTGTTCATTTGGAAGGCTTGGAGAGCTTGGATTATGAACTTCACTGTAGGCTTGGATTATCAGATTTCGTGCCTGAAGTGAAAG
TTGAAACTTTGGCTGTAATTCATGGAGACCTCATTCATCAAAGAGGAGGAATGGATGAGATGGAGTTCGCAGAGGCTGAGAGTAATATGAATGATTTGCTATCAAAGTAC
CATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTATGGTGAACTCTTCAAATTTGCACGTGGGTGGCTATGGAGGTTTCATTCGTGGATGGAATTGCTTGGAAGTTGAAAAGGGGAACAATTTTTATGACATCCAGTT
CAATACTAGGCTTGTTAAATCAACCATTGTTCATTTGGAAGGCTTGGAGAGCTTGGATTATGAACTTCACTGTAGGCTTGGATTATCAGATTTCGTGCCTGAAGTGAAAG
TTGAAACTTTGGCTGTAATTCATGGAGACCTCATTCATCAAAGAGGAGGAATGGATGAGATGGAGTTCGCAGAGGCTGAGAGTAATATGAATGATTTGCTATCAAAGTAC
CATTAG
Protein sequenceShow/hide protein sequence
MGMVNSSNLHVGGYGGFIRGWNCLEVEKGNNFYDIQFNTRLVKSTIVHLEGLESLDYELHCRLGLSDFVPEVKVETLAVIHGDLIHQRGGMDEMEFAEAESNMNDLLSKY
H