CuGenDBv2

Gene ID	Lcy07g009680
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	Chr07:38537175..38541917
RNA-Seq Expression	Lcy07g009680
Synteny	Lcy07g009680
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ERN08425.1 hypothetical protein AMTR_s03239p00005680, partial [Amborella trichopoda]

4.2e-49

76.98

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Query:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY
        MDL LALRM++P SL+  S+ ++R+++EKWDRSNRM LMIIKRGIPEAFRGAVSE +T+A  FL EIEKRFAK+DKAETS LL++LISMK+KG ENIREY
Subjt:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY

Query:  IMEMSHLTSKLKALKLELSDGLLVHLVLISLSAQFNQFK
        IMEMSHL SKLKALKLELSD LLVHLVLISL  QF+QFK
Subjt:  IMEMSHLTSKLKALKLELSDGLLVHLVLISLSAQFNQFK

RYE19068.1 hypothetical protein EOP45_13205, partial [Sphingobacteriaceae bacterium]

1.9e-49

76.26

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Query:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY
        MDL L+LRM++P SL+  SS D+R+++EKWDRSNRM LMIIKRGIPEAFRGAVSE ITNAKDFL EIEKRF K+DKAETS LL++LISMK+KGNENIREY
Subjt:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY

Query:  IMEMSHLTSKLKALKLELSDGLLVHLVLISLSAQFNQFK
        IMEMSH+ SKLK LKLELSD LLVHLVLIS+  + +QF+
Subjt:  IMEMSHLTSKLKALKLELSDGLLVHLVLISLSAQFNQFK

XP_022874595.1 uncharacterized protein LOC111393333 [Olea europaea var. sylvestris]

4.9e-50

79.14

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Query:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY
        MDL LAL +E+P  L  ESSLDE++ FE+WDRSNRM LMIIK GI EAFRGAVSEGITNAK+FL+EIEKRF KNDKAETS LLQ LISMKYKG  N+REY
Subjt:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY

Query:  IMEMSHLTSKLKALKLELSDGLLVHLVLISLSAQFNQFK
        IMEMSH+ SKLK LKLELSD LLVHLVLISL AQF+QFK
Subjt:  IMEMSHLTSKLKALKLELSDGLLVHLVLISLSAQFNQFK

XP_022880462.1 uncharacterized protein LOC111397696 [Olea europaea var. sylvestris]

3.2e-49

77.7

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Query:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY
        MDL LALR+E+P  L+ ESS DE++ FE+W RSNRM LMIIKRGIPEAFRGAVSEGITNAK+FL+EIEKRF KNDKAETS LLQ LISMKYKG  N+REY
Subjt:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY

Query:  IMEMSHLTSKLKALKLELSDGLLVHLVLISLSAQFNQFK
        IMEMSH+ SKLK LKL+ SD LLVHLVLISL AQ +QFK
Subjt:  IMEMSHLTSKLKALKLELSDGLLVHLVLISLSAQFNQFK

XP_022889207.1 uncharacterized protein LOC111404665 [Olea europaea var. sylvestris]

8.4e-50

78.42

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Query:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY
        MDL LAL +E+P  L  ESSLDE++ FE+W RSNRM LMIIKRGIPEAFRGAV EGITNAK+FL+EIEKRF KNDK+ETS LLQ LISMKYKG  N+REY
Subjt:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY

Query:  IMEMSHLTSKLKALKLELSDGLLVHLVLISLSAQFNQFK
        IMEMSH+ SKLK LKLELSD LLVHLVLISL AQF+QFK
Subjt:  IMEMSHLTSKLKALKLELSDGLLVHLVLISLSAQFNQFK

TrEMBL top hits

e value

%identity

Alignment

A0A438CR00 Uncharacterized protein

4.2e-47

73.38

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Query:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY
        MD+ LALRM +P  L+ ES+ ++   + KW+RSNR+ LMI+KRGIPEAFRGAV++ +TNA DFL EI+KRFAKNDKAETSMLL  LISMKYKG  N+REY
Subjt:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY

Query:  IMEMSHLTSKLKALKLELSDGLLVHLVLISLSAQFNQFK
        IMEMSHL SKLKALKLELSD LL+HLVLISL AQFNQFK
Subjt:  IMEMSHLTSKLKALKLELSDGLLVHLVLISLSAQFNQFK

A0A443PLH5 Uncharacterized protein

6.5e-48

77.7

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Query:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY
        MDL LALR+EQP SL+  SS D++K FEKWDRSNRM LMIIKRGIPEAFRGAVSE +T AK+FL EIEKRF KNDKAETS LLQ LISMKY G  NIREY
Subjt:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY

Query:  IMEMSHLTSKLKALKLELSDGLLVHLVLISLSAQFNQFK
        IM MSH+ SKLKAL LELSD LLVHLVLISL A ++QFK
Subjt:  IMEMSHLTSKLKALKLELSDGLLVHLVLISLSAQFNQFK

A0A4Q3EHJ0 gag_pre-integrs domain-containing protein (Fragment)

9.1e-50

76.26

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Query:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY
        MDL L+LRM++P SL+  SS D+R+++EKWDRSNRM LMIIKRGIPEAFRGAVSE ITNAKDFL EIEKRF K+DKAETS LL++LISMK+KGNENIREY
Subjt:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY

Query:  IMEMSHLTSKLKALKLELSDGLLVHLVLISLSAQFNQFK
        IMEMSH+ SKLK LKLELSD LLVHLVLIS+  + +QF+
Subjt:  IMEMSHLTSKLKALKLELSDGLLVHLVLISLSAQFNQFK

A0A5P1E579 CCHC-type domain-containing protein

3.8e-48

76.26

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Query:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY
        MDL  ALR EQP  L+ +S+ D +K  EKW+RSNRM LMIIKRG+PEAFRG  SEGIT AKDFL EIEKRFAKNDK ETS LL RLISMKYKG  NIREY
Subjt:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY

Query:  IMEMSHLTSKLKALKLELSDGLLVHLVLISLSAQFNQFK
        IMEMSH+ SKLKALKL+L D LLVHLVL+SL AQFNQFK
Subjt:  IMEMSHLTSKLKALKLELSDGLLVHLVLISLSAQFNQFK

U5CY72 CCHC-type domain-containing protein (Fragment)

2.0e-49

76.98

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Query:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY
        MDL LALRM++P SL+  S+ ++R+++EKWDRSNRM LMIIKRGIPEAFRGAVSE +T+A  FL EIEKRFAK+DKAETS LL++LISMK+KG ENIREY
Subjt:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY

Query:  IMEMSHLTSKLKALKLELSDGLLVHLVLISLSAQFNQFK
        IMEMSHL SKLKALKLELSD LLVHLVLISL  QF+QFK
Subjt:  IMEMSHLTSKLKALKLELSDGLLVHLVLISLSAQFNQFK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G53670.1 unknown protein

1.3e-19

40.97

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Query:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY
        MDL L+L  E+P S          K  + WDRSNR+ +MI+K  IP+ FRG V + +T AKDFL  +E  FAKN++AE S +     SM Y  NEN+RE 
Subjt:  MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREY

Query:  IMEMSHLTSKLKALKLE---LSDGLLVHLVLISLSAQFNQFKQL
        IM M  L +K K L +     +D +L H  +  L  Q+   K +
Subjt:  IMEMSHLTSKLKALKLE---LSDGLLVHLVLISLSAQFNQFKQL

Sequences

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CDS sequence

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ATGGATCTAGGCCTTGCACTAAGAATGGAGCAACCCCCTTCTCTTTCAGTTGAAAGTTCTCTTGATGAAAGGAAACTTTTTGAGAAGTGGGACCGCTCAAACCGCATGTG
TCTAATGATCATAAAGCGTGGCATTCCCGAGGCATTTAGAGGTGCGGTATCTGAAGGGATAACCAATGCCAAAGATTTCCTTATTGAAATAGAAAAACGTTTTGCTAAAA
ACGATAAGGCTGAAACAAGCATGCTATTACAACGCTTGATTTCAATGAAATATAAGGGAAATGAAAATATTAGGGAGTACATTATGGAAATGTCCCATCTGACATCAAAA
CTAAAGGCACTTAAGCTTGAGCTATCTGATGGCTTGCTTGTGCACTTGGTATTGATCTCTCTTTCTGCACAGTTTAACCAGTTTAAGCAGCTCACCGTCGCCGACGCTTC
TCTGCCGTCCACTGCTGCCACTGTCACCGTCGTCTTTCTTCCGTTCGCGTCGCAGCAGCCTTGCTCCTACCGATTTTGCACTGATTTTCTACACCAGCTCACCGTTGTCG
ACGCTTCTCTGCCGTCCACTGCTGCCGCTGTCACCGTTGTCTTTCTTCCGTTCGCGTCGCGACAGCCTTCTCCTATCGATTTTGCACTGATTTTCTACACGTTTGTTAAG
CTCGATTGA

mRNA sequence

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Protein sequence

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MDLGLALRMEQPPSLSVESSLDERKLFEKWDRSNRMCLMIIKRGIPEAFRGAVSEGITNAKDFLIEIEKRFAKNDKAETSMLLQRLISMKYKGNENIREYIMEMSHLTSK
LKALKLELSDGLLVHLVLISLSAQFNQFKQLTVADASLPSTAATVTVVFLPFASQQPCSYRFCTDFLHQLTVVDASLPSTAAAVTVVFLPFASRQPSPIDFALIFYTFVK
LD

Lcy07g009680 (gene) of Sponge gourd (P93075) v1 genome