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Lcy08g003280 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy08g003280
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr08:4544169..4551503
RNA-Seq ExpressionLcy08g003280
SyntenyLcy08g003280
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013723.1 hypothetical protein SDJN02_23890, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-5565.73Show/hide
Query:  RLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFD
        +L+ FEPL+DATS+L QI+KDAD +FT  M  +IASH+SPRFVATLQMS R FTNY +DH + S++SLESFHDAMLDGGS+SSM++H+LE+  QM+LR++
Subjt:  RLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFD

Query:  -ASGHAPPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKE
          S + PPLH EL LSP Q +  LGQV YGK+FTV+SK LR+IIKELPLF  D V V  TS+R+KFSIASKEI +TKE
Subjt:  -ASGHAPPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKE

XP_008458682.1 PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]4.1e-6270.22Show/hide
Query:  RLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFD
        RLE FEPL+DATS+LAQ+AKDAD KFTP M +II S+ SP+FVATLQ+SRR FTN+ +DHN  S++SL+ FHDAMLDGGS+SSMT+HLL+  NQMVLRF+
Subjt:  RLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFD

Query:  ASGH-APPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKE
           H  PPLHHEL LSP Q ++ LGQV YG +FTV S+ELRRIIKELPLF  D+V VTVT S++KFSI SKEIILTKE
Subjt:  ASGH-APPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKE

XP_016903187.1 PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo]8.6e-6064.48Show/hide
Query:  RLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFD
        RL++F+PL DATS LAQIA++AD KFTP  F IIAS+ SPRFVA LQM+   F NY +D++H SRISLESFHDA+LDGG+  SMT+HLL NI Q++LRF+
Subjt:  RLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFD

Query:  ASGHAPPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKEVR-FIC
        +S HAP +HHEL+L+PSQE+D LG+V Y K+F++ SK+LRR+I+ LP+F  DS+CVT T S++KFSIASKEI+LTKE + FIC
Subjt:  ASGHAPPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKEVR-FIC

XP_031744160.1 uncharacterized protein LOC116404808 [Cucumis sativus]1.1e-5462.15Show/hide
Query:  RLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFD
        RL+NFEP   ATS LA IA++AD KFTP  F I  S+  PRFVA L M+   F NY +D++H SRISLESFHDA+LDGG   SMT+HLL NINQM+LRF+
Subjt:  RLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFD

Query:  ASGHAPPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKE
        +S HAP + HEL+L PSQE+D LG++ Y K+F++ SK LRR+I+ LP+F  DS+CVT T S++KFSIASKEI+LTKE
Subjt:  ASGHAPPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKE

XP_038875055.1 uncharacterized protein LOC120067580 [Benincasa hispida]1.8e-5465.73Show/hide
Query:  RLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFD
        +L NFEPL+DATS LAQI+  AD KFTP  F +IA + SPRFVATLQ+S++ FTNY +DH H S++ LESFHDA+LDGGS++SMT+HLLE  NQM+LRF 
Subjt:  RLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFD

Query:  A-SGHAPPLHHELTLSPSQ--EDDILGQVTYGKYFTVHSKELRRIIKELPLFQADS-VCVTVTSSRIKFSIASKEIIL
          S   PPLHHELT SP Q  +++I GQ+  GK+F V S+ LRRIIKELP+FQ DS VCV VTSS+IKFSIASKEI+L
Subjt:  A-SGHAPPLHHELTLSPSQ--EDDILGQVTYGKYFTVHSKELRRIIKELPLFQADS-VCVTVTSSRIKFSIASKEIIL

TrEMBL top hitse value%identityAlignment
A0A1S3C8J1 uncharacterized protein LOC1034980102.0e-6270.22Show/hide
Query:  RLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFD
        RLE FEPL+DATS+LAQ+AKDAD KFTP M +II S+ SP+FVATLQ+SRR FTN+ +DHN  S++SL+ FHDAMLDGGS+SSMT+HLL+  NQMVLRF+
Subjt:  RLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFD

Query:  ASGH-APPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKE
           H  PPLHHEL LSP Q ++ LGQV YG +FTV S+ELRRIIKELPLF  D+V VTVT S++KFSI SKEIILTKE
Subjt:  ASGH-APPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKE

A0A1S3CL88 uncharacterized protein LOC1035022508.4e-5364.29Show/hide
Query:  RLENFEPLVDATSILAQIAKD-ADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRF
        +L+NF+PL+DATS LAQI+ D AD KFTP  F IIASH SPRF+ATLQ+S ++FT + +D++H S++SLESFHDA+LDGGS++SMT+HLL+  NQM+LRF
Subjt:  RLENFEPLVDATSILAQIAKD-ADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRF

Query:  DA-SGHAPPLHHELTLSPSQ-EDDILGQ--VTYGKYFTVHSKELRRIIKELPLFQADS-VCVTVTSSRIKFSIASKEIILTK
        D  S    PLHHELTLSP Q ED+ +GQ  +   KYF V SK LRRIIK+LP+FQ DS + V VT+SR+KFSIASKEIILT+
Subjt:  DA-SGHAPPLHHELTLSPSQ-EDDILGQ--VTYGKYFTVHSKELRRIIKELPLFQADS-VCVTVTSSRIKFSIASKEIILTK

A0A1S4E4N8 uncharacterized protein LOC1035022634.1e-6064.48Show/hide
Query:  RLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFD
        RL++F+PL DATS LAQIA++AD KFTP  F IIAS+ SPRFVA LQM+   F NY +D++H SRISLESFHDA+LDGG+  SMT+HLL NI Q++LRF+
Subjt:  RLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFD

Query:  ASGHAPPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKEVR-FIC
        +S HAP +HHEL+L+PSQE+D LG+V Y K+F++ SK+LRR+I+ LP+F  DS+CVT T S++KFSIASKEI+LTKE + FIC
Subjt:  ASGHAPPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKEVR-FIC

A0A5D3BTK3 Uncharacterized protein6.0e-5162.36Show/hide
Query:  RLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFD
        RLE FEPL+DATS+LAQ+AKDAD KFTP M +II S+ SP+FVATLQ+SRR FTN+ +DHN  S++SL+ FHDAMLDGGS+                   
Subjt:  RLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFD

Query:  ASGHAPPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKEV
             PPLHHEL LSP Q ++ LGQV YG +FTV S+ELRRIIKELPLF  D+V VTVT S++KFSI SKEIILTKEV
Subjt:  ASGHAPPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKEV

A0A5D3DZ07 LINE-1 retrotransposable element ORF2 protein8.4e-5364.29Show/hide
Query:  RLENFEPLVDATSILAQIAKD-ADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRF
        +L+NF+PL+DATS LAQI+ D AD KFTP  F IIASH SPRF+ATLQ+S ++FT + +D++H S++SLESFHDA+LDGGS++SMT+HLL+  NQM+LRF
Subjt:  RLENFEPLVDATSILAQIAKD-ADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRF

Query:  DA-SGHAPPLHHELTLSPSQ-EDDILGQ--VTYGKYFTVHSKELRRIIKELPLFQADS-VCVTVTSSRIKFSIASKEIILTK
        D  S    PLHHELTLSP Q ED+ +GQ  +   KYF V SK LRRIIK+LP+FQ DS + V VT+SR+KFSIASKEIILT+
Subjt:  DA-SGHAPPLHHELTLSPSQ-EDDILGQ--VTYGKYFTVHSKELRRIIKELPLFQADS-VCVTVTSSRIKFSIASKEIILTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGAAGCAGAAGCTATTTTAGAAGGGCTTAAGCATGTAATCGATACTTGCATTCGAAGGAAAATCCACTTGGAAATTGAGTCGGATGCTCTTGAAGTGGTTAGTGT
GCTGACCGAAGCTTCAGTCGACCAGTCGGATTTGAAATCCGTCATGAGCGTCATCTCTGCCTCGAAGCTTCCGACGATCGATTTTCGCCATTGTTGTAGGCTTTTGAACA
CAGTAGTGCACTGTGTTGTCAATTTGGCTTGTAATTCCTATTTTGTGAACGATTTTGATAGAAGGCTGGAGAACTTTGAACCTCTTGTGGATGCAACCTCCATACTCGCT
CAAATCGCCAAGGATGCCGACGCCAAATTCACTCCGAGGATGTTCTTGATCATCGCCTCGCACAGTTCCCCTCGGTTCGTCGCGACGCTGCAGATGTCGCGTCGATTCTT
TACGAACTATTTGATCGATCATAATCACGTTTCGAGGATCTCCCTTGAATCCTTCCATGATGCTATGTTGGATGGAGGGAGTTACTCTTCAATGACAATGCATCTTCTTG
AAAACATAAATCAAATGGTCCTTAGGTTTGATGCTTCAGGGCATGCGCCACCGTTGCATCATGAATTGACATTGTCGCCTTCGCAAGAAGACGATATATTGGGTCAAGTT
ACATATGGGAAATATTTCACAGTTCATTCTAAAGAATTAAGACGTATTATAAAAGAATTGCCACTCTTCCAAGCGGATTCAGTTTGTGTTACGGTAACGAGTTCACGAAT
CAAGTTCTCTATTGCATCTAAGGAGATTATTCTTACGAAAGAGGTACGGTTCATTTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTGAAGCAGAAGCTATTTTAGAAGGGCTTAAGCATGTAATCGATACTTGCATTCGAAGGAAAATCCACTTGGAAATTGAGTCGGATGCTCTTGAAGTGGTTAGTGT
GCTGACCGAAGCTTCAGTCGACCAGTCGGATTTGAAATCCGTCATGAGCGTCATCTCTGCCTCGAAGCTTCCGACGATCGATTTTCGCCATTGTTGTAGGCTTTTGAACA
CAGTAGTGCACTGTGTTGTCAATTTGGCTTGTAATTCCTATTTTGTGAACGATTTTGATAGAAGGCTGGAGAACTTTGAACCTCTTGTGGATGCAACCTCCATACTCGCT
CAAATCGCCAAGGATGCCGACGCCAAATTCACTCCGAGGATGTTCTTGATCATCGCCTCGCACAGTTCCCCTCGGTTCGTCGCGACGCTGCAGATGTCGCGTCGATTCTT
TACGAACTATTTGATCGATCATAATCACGTTTCGAGGATCTCCCTTGAATCCTTCCATGATGCTATGTTGGATGGAGGGAGTTACTCTTCAATGACAATGCATCTTCTTG
AAAACATAAATCAAATGGTCCTTAGGTTTGATGCTTCAGGGCATGCGCCACCGTTGCATCATGAATTGACATTGTCGCCTTCGCAAGAAGACGATATATTGGGTCAAGTT
ACATATGGGAAATATTTCACAGTTCATTCTAAAGAATTAAGACGTATTATAAAAGAATTGCCACTCTTCCAAGCGGATTCAGTTTGTGTTACGGTAACGAGTTCACGAAT
CAAGTTCTCTATTGCATCTAAGGAGATTATTCTTACGAAAGAGGTACGGTTCATTTGCTAA
Protein sequenceShow/hide protein sequence
MLEAEAILEGLKHVIDTCIRRKIHLEIESDALEVVSVLTEASVDQSDLKSVMSVISASKLPTIDFRHCCRLLNTVVHCVVNLACNSYFVNDFDRRLENFEPLVDATSILA
QIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFDASGHAPPLHHELTLSPSQEDDILGQV
TYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKEVRFIC