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Lcy08g004100 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy08g004100
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionexopolygalacturonase clone GBGA483
Genome locationChr08:5385472..5386316
RNA-Seq ExpressionLcy08g004100
SyntenyLcy08g004100
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR011050 - Pectin lyase fold/virulence factor


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059180.1 exopolygalacturonase [Cucumis melo var. makuwa]7.8e-0880.95Show/hide
Query:  SRSPTFIFFFFFFVGLITNAQAADFHVKRYGARANGNSDDSQ
        SRS TFI   F F+GLITN QA DFHVKRYGARANGNSDDSQ
Subjt:  SRSPTFIFFFFFFVGLITNAQAADFHVKRYGARANGNSDDSQ

KAG6572247.1 hypothetical protein SDJN03_28975, partial [Cucurbita argyrosperma subsp. sororia]1.1e-0676.74Show/hide
Query:  MSRSPTFIFFFFFFVGLITNAQAADFHVKRYGARANGNSDDSQ
        +SRS TF F  FFF+ LITN  AADFHVKRYGA+ANGNSDDSQ
Subjt:  MSRSPTFIFFFFFFVGLITNAQAADFHVKRYGARANGNSDDSQ

XP_004144612.1 exopolygalacturonase clone GBGA483 [Cucumis sativus]9.3e-0983.72Show/hide
Query:  MSRSPTFIFFFFFFVGLITNAQAADFHVKRYGARANGNSDDSQ
        +SRS TFI   F F+GLITNAQAADFHVKRYGARANGNSDDSQ
Subjt:  MSRSPTFIFFFFFFVGLITNAQAADFHVKRYGARANGNSDDSQ

XP_008462107.1 PREDICTED: exopolygalacturonase clone GBGA483 [Cucumis melo]7.8e-0880.95Show/hide
Query:  SRSPTFIFFFFFFVGLITNAQAADFHVKRYGARANGNSDDSQ
        SRS TFI   F F+GLITN QA DFHVKRYGARANGNSDDSQ
Subjt:  SRSPTFIFFFFFFVGLITNAQAADFHVKRYGARANGNSDDSQ

XP_038888575.1 exopolygalacturonase clone GBGA483-like [Benincasa hispida]4.2e-0986.05Show/hide
Query:  MSRSPTFIFFFFFFVGLITNAQAADFHVKRYGARANGNSDDSQ
        +SRS T I  FFFF+GLITNAQAADFHVKRYGARANGNSDDSQ
Subjt:  MSRSPTFIFFFFFFVGLITNAQAADFHVKRYGARANGNSDDSQ

TrEMBL top hitse value%identityAlignment
A0A0A0K6I9 Polygalacturonase4.5e-0983.72Show/hide
Query:  MSRSPTFIFFFFFFVGLITNAQAADFHVKRYGARANGNSDDSQ
        +SRS TFI   F F+GLITNAQAADFHVKRYGARANGNSDDSQ
Subjt:  MSRSPTFIFFFFFFVGLITNAQAADFHVKRYGARANGNSDDSQ

A0A1S3CG85 exopolygalacturonase clone GBGA4833.8e-0880.95Show/hide
Query:  SRSPTFIFFFFFFVGLITNAQAADFHVKRYGARANGNSDDSQ
        SRS TFI   F F+GLITN QA DFHVKRYGARANGNSDDSQ
Subjt:  SRSPTFIFFFFFFVGLITNAQAADFHVKRYGARANGNSDDSQ

A0A5A7UVQ4 Exopolygalacturonase3.8e-0880.95Show/hide
Query:  SRSPTFIFFFFFFVGLITNAQAADFHVKRYGARANGNSDDSQ
        SRS TFI   F F+GLITN QA DFHVKRYGARANGNSDDSQ
Subjt:  SRSPTFIFFFFFFVGLITNAQAADFHVKRYGARANGNSDDSQ

A0A6J1C2F3 exopolygalacturonase clone GBGA483-like1.6e-0682.86Show/hide
Query:  FFFFFFVGLITNAQAADFHVKRYGARANGNSDDSQ
        F  FFF+ LITN QA DFHVKRYGARANGNSDDSQ
Subjt:  FFFFFFVGLITNAQAADFHVKRYGARANGNSDDSQ

A0A6J1HVG8 exopolygalacturonase clone GBGA483-like7.2e-0776.74Show/hide
Query:  MSRSPTFIFFFFFFVGLITNAQAADFHVKRYGARANGNSDDSQ
        +SRS TFI   FFF+ LITN  AADFHVKRYGA+ANGNSDDSQ
Subjt:  MSRSPTFIFFFFFFVGLITNAQAADFHVKRYGARANGNSDDSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGATCACCCACATTCATCTTCTTCTTCTTCTTCTTTGTTGGCCTCATCACAAATGCCCAAGCTGCTGATTTCCATGTCAAAAGATATGGAGCAAGAGCC
AATGGGAATTCAGACGATAGCCAGTGGTTAGAAGGAGCTGGCAGCTACATTGTGACGGTCACATTGAAGAGTTTTTCGGGTTTGAGGAGGCGTTTCAATCTCGTT
TCCACATCTGAGCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGATCACCCACATTCATCTTCTTCTTCTTCTTCTTTGTTGGCCTCATCACAAATGCCCAAGCTGCTGATTTCCATGTCAAAAGATATGGAGCAAGAGCC
AATGGGAATTCAGACGATAGCCAGTGGTTAGAAGGAGCTGGCAGCTACATTGTGACGGTCACATTGAAGAGTTTTTCGGGTTTGAGGAGGCGTTTCAATCTCGTT
TCCACATCTGAGCTTTAA
Protein sequenceShow/hide protein sequence
MSRSPTFIFFFFFFVGLITNAQAADFHVKRYGARANGNSDDSQWLEGAGSYIVTVTLKSFSGLRRRFNLVSTSEL