; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy08g005000 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy08g005000
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr08:6524384..6525533
RNA-Seq ExpressionLcy08g005000
SyntenyLcy08g005000
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4274760.1 unnamed protein product [Prunus armeniaca]7.9e-1230.91Show/hide
Query:  SPVTWVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPLNAGYRCIRRPWKILWMESLAVCEGLRHITNRKMI-VHVESDALQLIKLLNSQMEDLTE
        +P++W  P  G  K++CDAAW   R  GG+GW++R   G  L AG +        + ME LA+   L    N  +  + VESD+ + I +LN +    ++
Subjt:  SPVTWVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPLNAGYRCIRRPWKILWMESLAVCEGLRHITNRKMI-VHVESDALQLIKLLNSQMEDLTE

Query:  TTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQLASKACHSGDADFWETSFPDWLLNLNSVDIGL
            + + + L+  L+  S     R+ N  AH +A  A   G    W+   PDWL N  + D+ L
Subjt:  TTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQLASKACHSGDADFWETSFPDWLLNLNSVDIGL

KAF4360260.1 hypothetical protein F8388_020551 [Cannabis sativa]2.1e-1229.36Show/hide
Query:  MWNYRNSIKHKQQQPNLNVLENLISSYLEELETSRSGCETEAFPANSSTERSGALSPVT-WVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPLNA
        +W  RN     ++  NL+V+    +  L+ + ++  G  T   P  +    +  LS  T W+ PPAG   ++CDAA     +  G G+I R WDG  L A
Subjt:  MWNYRNSIKHKQQQPNLNVLENLISSYLEELETSRSGCETEAFPANSSTERSGALSPVT-WVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPLNA

Query:  GYRCIRRPWKILWMESLAVCEGLRHITN-RKMIVHVESDALQLIKLLNSQMEDLTETTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQLASKACHSGDA
        G     R   +   E+ A+ E L ++ N     + ++SD   L+  + +Q   LT     I + ++ ME LN  S+ HV+R +N  AH LA K   +   
Subjt:  GYRCIRRPWKILWMESLAVCEGLRHITN-RKMIVHVESDALQLIKLLNSQMEDLTETTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQLASKACHSGDA

Query:  DFWETSFPDWLLNLNSVD
          +   FP WL    + D
Subjt:  DFWETSFPDWLLNLNSVD

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.0e-1833.16Show/hide
Query:  MWNYRNSIKHKQQQPNLNVLENLISSYLEELETSRSGCETEAFPANSSTERSGALSPVT---WVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPL
        +W  RN    K   P    ++  I  Y+  + ++      +    N        +   T   W  P +  WKL+ +AAW    + GGIGWILR   G  +
Subjt:  MWNYRNSIKHKQQQPNLNVLENLISSYLEELETSRSGCETEAFPANSSTERSGALSPVT---WVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPL

Query:  NAGYRCIRRPWKILWMESLAVCEGLRHITNRK-MIVHVESDALQLIKLLNSQMEDLTETTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQLASKA
         A  R IR    I ++E +A+CEGLR I       +H+ESD+L+ I LL+ Q +D TE    ++E   +M+ + I S+RH+SR  N +AH LA +A
Subjt:  NAGYRCIRRPWKILWMESLAVCEGLRHITNRK-MIVHVESDALQLIKLLNSQMEDLTETTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQLASKA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.2e-2231.28Show/hide
Query:  MWNYRNSIKHKQQQPNLNVLENLISSYLEELETSRSGCETEAFPANSSTERSGALSPVTWVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPLNAG
        +WN+RN +  + +  + + +   ++ ++ E     S  ++E    + S       + + W  PP   W L+ DA+W +S  +GGIGWI+R WDG  + AG
Subjt:  MWNYRNSIKHKQQQPNLNVLENLISSYLEELETSRSGCETEAFPANSSTERSGALSPVTWVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPLNAG

Query:  YRCIRRPWKILWMESLAVCEGLRHITNRKMI--VHVESDALQLIKLLNSQMEDLTETTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQLASKACHSGDA
         R +     +  +E+ A+ EGLR++TN  ++  +H+E+D+ ++  LLN + EDLT+T   ++E   L +   I +   V R  NG AH LA +A    ++
Subjt:  YRCIRRPWKILWMESLAVCEGLRHITNRKMI--VHVESDALQLIKLLNSQMEDLTETTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQLASKACHSGDA

Query:  DFWETSFPDWL
          W   FP+WL
Subjt:  DFWETSFPDWL

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]5.1e-1933.33Show/hide
Query:  MWNYRNSIKHKQQQPNLNVLENLISSYLEELETSRSGCETEAFPANSS---TERSGALSPVTWVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPL
        +W  RN    K        ++ +I  Y+  + ++      +   AN       R G  +   W  P +  WKL+ DAAW    + GGIGWILR   G  +
Subjt:  MWNYRNSIKHKQQQPNLNVLENLISSYLEELETSRSGCETEAFPANSS---TERSGALSPVTWVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPL

Query:  NAGYRCIRRPWKILWMESLAVCEGLRHITNRK---------MIVHVESDALQLIKLLNSQMEDLTETTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQL
         A  R IR    I ++E +A+CEGLR I               +H+ESD+L+ I LL+ Q +D TE    ++E   +ME + I S+RH+SR  N +AH L
Subjt:  NAGYRCIRRPWKILWMESLAVCEGLRHITNRK---------MIVHVESDALQLIKLLNSQMEDLTETTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQL

Query:  ASKA
        A +A
Subjt:  ASKA

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134129.5e-1933.16Show/hide
Query:  MWNYRNSIKHKQQQPNLNVLENLISSYLEELETSRSGCETEAFPANSSTERSGALSPVT---WVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPL
        +W  RN    K   P    ++  I  Y+  + ++      +    N        +   T   W  P +  WKL+ +AAW    + GGIGWILR   G  +
Subjt:  MWNYRNSIKHKQQQPNLNVLENLISSYLEELETSRSGCETEAFPANSSTERSGALSPVT---WVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPL

Query:  NAGYRCIRRPWKILWMESLAVCEGLRHITNRK-MIVHVESDALQLIKLLNSQMEDLTETTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQLASKA
         A  R IR    I ++E +A+CEGLR I       +H+ESD+L+ I LL+ Q +D TE    ++E   +M+ + I S+RH+SR  N +AH LA +A
Subjt:  NAGYRCIRRPWKILWMESLAVCEGLRHITNRK-MIVHVESDALQLIKLLNSQMEDLTETTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQLASKA

A0A6J1DNV9 uncharacterized protein LOC1110224031.1e-2231.28Show/hide
Query:  MWNYRNSIKHKQQQPNLNVLENLISSYLEELETSRSGCETEAFPANSSTERSGALSPVTWVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPLNAG
        +WN+RN +  + +  + + +   ++ ++ E     S  ++E    + S       + + W  PP   W L+ DA+W +S  +GGIGWI+R WDG  + AG
Subjt:  MWNYRNSIKHKQQQPNLNVLENLISSYLEELETSRSGCETEAFPANSSTERSGALSPVTWVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPLNAG

Query:  YRCIRRPWKILWMESLAVCEGLRHITNRKMI--VHVESDALQLIKLLNSQMEDLTETTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQLASKACHSGDA
         R +     +  +E+ A+ EGLR++TN  ++  +H+E+D+ ++  LLN + EDLT+T   ++E   L +   I +   V R  NG AH LA +A    ++
Subjt:  YRCIRRPWKILWMESLAVCEGLRHITNRKMI--VHVESDALQLIKLLNSQMEDLTETTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQLASKACHSGDA

Query:  DFWETSFPDWL
          W   FP+WL
Subjt:  DFWETSFPDWL

A0A6J1DSV1 uncharacterized protein LOC1110236082.5e-1933.33Show/hide
Query:  MWNYRNSIKHKQQQPNLNVLENLISSYLEELETSRSGCETEAFPANSS---TERSGALSPVTWVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPL
        +W  RN    K        ++ +I  Y+  + ++      +   AN       R G  +   W  P +  WKL+ DAAW    + GGIGWILR   G  +
Subjt:  MWNYRNSIKHKQQQPNLNVLENLISSYLEELETSRSGCETEAFPANSS---TERSGALSPVTWVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPL

Query:  NAGYRCIRRPWKILWMESLAVCEGLRHITNRK---------MIVHVESDALQLIKLLNSQMEDLTETTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQL
         A  R IR    I ++E +A+CEGLR I               +H+ESD+L+ I LL+ Q +D TE    ++E   +ME + I S+RH+SR  N +AH L
Subjt:  NAGYRCIRRPWKILWMESLAVCEGLRHITNRK---------MIVHVESDALQLIKLLNSQMEDLTETTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQL

Query:  ASKA
        A +A
Subjt:  ASKA

A0A6J5UE59 Reverse transcriptase domain-containing protein3.8e-1230.91Show/hide
Query:  SPVTWVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPLNAGYRCIRRPWKILWMESLAVCEGLRHITNRKMI-VHVESDALQLIKLLNSQMEDLTE
        +P++W  P  G  K++CDAAW   R  GG+GW++R   G  L AG +        + ME LA+   L    N  +  + VESD+ + I +LN +    ++
Subjt:  SPVTWVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPLNAGYRCIRRPWKILWMESLAVCEGLRHITNRKMI-VHVESDALQLIKLLNSQMEDLTE

Query:  TTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQLASKACHSGDADFWETSFPDWLLNLNSVDIGL
            + + + L+  L+  S     R+ N  AH +A  A   G    W+   PDWL N  + D+ L
Subjt:  TTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQLASKACHSGDADFWETSFPDWLLNLNSVDIGL

A0A7J6ERF5 Uncharacterized protein1.0e-1229.36Show/hide
Query:  MWNYRNSIKHKQQQPNLNVLENLISSYLEELETSRSGCETEAFPANSSTERSGALSPVT-WVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPLNA
        +W  RN     ++  NL+V+    +  L+ + ++  G  T   P  +    +  LS  T W+ PPAG   ++CDAA     +  G G+I R WDG  L A
Subjt:  MWNYRNSIKHKQQQPNLNVLENLISSYLEELETSRSGCETEAFPANSSTERSGALSPVT-WVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPLNA

Query:  GYRCIRRPWKILWMESLAVCEGLRHITN-RKMIVHVESDALQLIKLLNSQMEDLTETTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQLASKACHSGDA
        G     R   +   E+ A+ E L ++ N     + ++SD   L+  + +Q   LT     I + ++ ME LN  S+ HV+R +N  AH LA K   +   
Subjt:  GYRCIRRPWKILWMESLAVCEGLRHITN-RKMIVHVESDALQLIKLLNSQMEDLTETTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQLASKACHSGDA

Query:  DFWETSFPDWLLNLNSVD
          +   FP WL    + D
Subjt:  DFWETSFPDWLLNLNSVD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein1.0e-0425.7Show/hide
Query:  MWNYRNSIKHK--QQQPNLNVLENLISSYLEELETSRSGCETEAFPANSSTERSGALSPVTWVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPLN
        +W  RN++     ++ P+  VL         + ET      T++     S  R  A + + W +PPA   K + DA +   + +   GWI+R   GTP++
Subjt:  MWNYRNSIKHK--QQQPNLNVLENLISSYLEELETSRSGCETEAFPANSSTERSGALSPVTWVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPLN

Query:  AGYRCIRRPWKILWMESLAVCEGLRHITNRKMI-VHVESDALQLIKLLN--SQMEDLTETTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQLASKACHS
         G   +      L  E+ A+   L+    R    V +E D   LI L+N  S    L      I         +  G +R   R  N +AH LA   C  
Subjt:  AGYRCIRRPWKILWMESLAVCEGLRHITNRKMI-VHVESDALQLIKLLN--SQMEDLTETTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQLASKACHS

Query:  GDADFWETSFPDWL
                S P WL
Subjt:  GDADFWETSFPDWL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAACTACAGAAATTCAATCAAACACAAACAGCAGCAGCCCAACTTAAATGTGCTCGAAAATCTAATCAGTTCATACCTGGAGGAACTCGAGACGTCGAGATCTGG
CTGTGAAACGGAAGCTTTTCCGGCGAACTCTTCAACCGAGCGGAGTGGAGCACTTTCTCCGGTGACTTGGGTTTCGCCTCCGGCAGGGGAATGGAAGCTTAGTTGTGACG
CTGCGTGGTGCGAGAGTCGATCTCAAGGAGGAATCGGTTGGATCTTGCGTATGTGGGATGGAACGCCGTTGAACGCCGGATATCGATGCATTCGCCGGCCATGGAAGATC
TTGTGGATGGAGTCACTTGCGGTGTGTGAAGGTCTACGGCACATCACGAATAGAAAGATGATAGTTCATGTTGAATCTGATGCCCTTCAATTAATTAAACTCCTGAACTC
CCAAATGGAAGACTTAACAGAGACTACTCACTTCATCAAAGAGGCCCAAGTTCTTATGGAAGGCCTTAATATTGGATCTGTTAGGCATGTTAGCAGAGCCCATAATGGCA
TGGCCCATCAGTTAGCATCCAAGGCTTGTCATAGTGGAGATGCTGATTTTTGGGAAACTTCTTTTCCTGATTGGTTGTTGAATTTGAATAGTGTTGACATTGGGCTTGTT
AATCAAACTAGTGGGGTTCCTGTCCTACAGTTGATATCCCAATGGAAAGTTTATCTTTGTTCTAATGAAAAGTCTAATCAAATGCTAAGTATATTCTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAACTACAGAAATTCAATCAAACACAAACAGCAGCAGCCCAACTTAAATGTGCTCGAAAATCTAATCAGTTCATACCTGGAGGAACTCGAGACGTCGAGATCTGG
CTGTGAAACGGAAGCTTTTCCGGCGAACTCTTCAACCGAGCGGAGTGGAGCACTTTCTCCGGTGACTTGGGTTTCGCCTCCGGCAGGGGAATGGAAGCTTAGTTGTGACG
CTGCGTGGTGCGAGAGTCGATCTCAAGGAGGAATCGGTTGGATCTTGCGTATGTGGGATGGAACGCCGTTGAACGCCGGATATCGATGCATTCGCCGGCCATGGAAGATC
TTGTGGATGGAGTCACTTGCGGTGTGTGAAGGTCTACGGCACATCACGAATAGAAAGATGATAGTTCATGTTGAATCTGATGCCCTTCAATTAATTAAACTCCTGAACTC
CCAAATGGAAGACTTAACAGAGACTACTCACTTCATCAAAGAGGCCCAAGTTCTTATGGAAGGCCTTAATATTGGATCTGTTAGGCATGTTAGCAGAGCCCATAATGGCA
TGGCCCATCAGTTAGCATCCAAGGCTTGTCATAGTGGAGATGCTGATTTTTGGGAAACTTCTTTTCCTGATTGGTTGTTGAATTTGAATAGTGTTGACATTGGGCTTGTT
AATCAAACTAGTGGGGTTCCTGTCCTACAGTTGATATCCCAATGGAAAGTTTATCTTTGTTCTAATGAAAAGTCTAATCAAATGCTAAGTATATTCTTCTGA
Protein sequenceShow/hide protein sequence
MWNYRNSIKHKQQQPNLNVLENLISSYLEELETSRSGCETEAFPANSSTERSGALSPVTWVSPPAGEWKLSCDAAWCESRSQGGIGWILRMWDGTPLNAGYRCIRRPWKI
LWMESLAVCEGLRHITNRKMIVHVESDALQLIKLLNSQMEDLTETTHFIKEAQVLMEGLNIGSVRHVSRAHNGMAHQLASKACHSGDADFWETSFPDWLLNLNSVDIGLV
NQTSGVPVLQLISQWKVYLCSNEKSNQMLSIFF