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Lcy08g007700 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy08g007700
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionPhotosystem II stability/assembly factor
Genome locationChr08:10403123..10403780
RNA-Seq ExpressionLcy08g007700
SyntenyLcy08g007700
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsIPR028203 - Photosynthesis system II assembly factor Ycf48/Hcf136-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058574.1 photosystem II stability/assembly factor HCF136 [Cucumis melo var. makuwa]8.9e-4587.38Show/hide
Query:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK
        WAPRSIPSAEEEDFNYRFN+ISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA+YVTSNKGYNWK A+  T + 
Subjt:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK

Query:  GYN
          N
Subjt:  GYN

XP_022953181.1 photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita moschata]4.0e-4588.35Show/hide
Query:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK
        WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA+YVTSNKGYNWK A+  T + 
Subjt:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK

Query:  GYN
          N
Subjt:  GYN

XP_022991485.1 photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita maxima]4.0e-4588.35Show/hide
Query:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK
        WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA+YVTSNKGYNWK A+  T + 
Subjt:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK

Query:  GYN
          N
Subjt:  GYN

XP_023548135.1 photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita pepo subsp. pepo]8.9e-4587.38Show/hide
Query:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK
        WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATG+KSAEMVTDEGA+YVTSNKGYNWK A+  T + 
Subjt:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK

Query:  GYN
          N
Subjt:  GYN

XP_038900067.1 photosystem II stability/assembly factor HCF136, chloroplastic [Benincasa hispida]8.9e-4587.38Show/hide
Query:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK
        WAPRSIPSAEEEDFNYRFN+ISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA+YVTSNKGYNWK A+  T + 
Subjt:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK

Query:  GYN
          N
Subjt:  GYN

TrEMBL top hitse value%identityAlignment
A0A0A0K5Y1 Photosystem II stability/assembly factor4.3e-4587.38Show/hide
Query:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK
        WAPRSIPSAEEEDFNYRFN+ISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA+YVTSNKGYNWK A+  T + 
Subjt:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK

Query:  GYN
          N
Subjt:  GYN

A0A1S3CFV0 Photosystem II stability/assembly factor4.3e-4587.38Show/hide
Query:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK
        WAPRSIPSAEEEDFNYRFN+ISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA+YVTSNKGYNWK A+  T + 
Subjt:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK

Query:  GYN
          N
Subjt:  GYN

A0A5D3CGP8 Photosystem II stability/assembly factor4.3e-4587.38Show/hide
Query:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK
        WAPRSIPSAEEEDFNYRFN+ISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA+YVTSNKGYNWK A+  T + 
Subjt:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK

Query:  GYN
          N
Subjt:  GYN

A0A6J1GMA2 Photosystem II stability/assembly factor1.9e-4588.35Show/hide
Query:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK
        WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA+YVTSNKGYNWK A+  T + 
Subjt:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK

Query:  GYN
          N
Subjt:  GYN

A0A6J1JT27 Photosystem II stability/assembly factor1.9e-4588.35Show/hide
Query:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK
        WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA+YVTSNKGYNWK A+  T + 
Subjt:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK

Query:  GYN
          N
Subjt:  GYN

SwissProt top hitse value%identityAlignment
O82660 Photosystem II stability/assembly factor HCF136, chloroplastic1.7e-4378.64Show/hide
Query:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK
        W PRSIPSAEEEDFNYRFN+ISFKGKEGWI+GKPAILLYT++A E+W+RIPLS+QLPGDMV+IKAT +KSAEMVTDEGA+YVTSN+GYNWK AI  T + 
Subjt:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK

Query:  GYN
          N
Subjt:  GYN

P48325 Photosystem II stability/assembly factor HCF1361.7e-2255.32Show/hide
Query:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAI
        W  RS+     ED  YR N+ISF GKEGW+ GKPAILL+T++   SW RIPLS QLPGD   I A G   AE+ TD GA+Y T N G  WK  I
Subjt:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAI

Q5Z5A8 Photosystem II stability/assembly factor HCF136, chloroplastic2.3e-4377.67Show/hide
Query:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK
        W PRSIPSAE+EDFNYRFN++SF GKEGWI+GKPAILL+TS+A +SWERIPLSAQLPG+MVYIKATGE+SAEMVTDEGA+YVTSN+GYNWK A+  T + 
Subjt:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK

Query:  GYN
          N
Subjt:  GYN

Q8YQI3 Ycf48-like protein3.2e-2148.94Show/hide
Query:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAI
        W P ++     +D  YRF+++SF GKEGWIVG+P++LL+T++   SW RIPLS +LPG+ + I+A G   AEM TD GA+Y T++ G NWK  +
Subjt:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAI

Q9AW48 Photosystem II stability/assembly factor HCF136, chloroplastic1.4e-2447.12Show/hide
Query:  WAPRSIPSAE-EEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSN
        W PR+  + + +E+  YRF  ISF+G+EGW++GKPAI+LYT +  ++W R+P+S +LPG+   IKA G +SAE+ T  GA+YVT+N G NWK  +  T +
Subjt:  WAPRSIPSAE-EEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSN

Query:  KGYN
           N
Subjt:  KGYN

Arabidopsis top hitse value%identityAlignment
AT5G23120.1 photosystem II stability/assembly factor, chloroplast (HCF136)1.2e-4478.64Show/hide
Query:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK
        W PRSIPSAEEEDFNYRFN+ISFKGKEGWI+GKPAILLYT++A E+W+RIPLS+QLPGDMV+IKAT +KSAEMVTDEGA+YVTSN+GYNWK AI  T + 
Subjt:  WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNK

Query:  GYN
          N
Subjt:  GYN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGCTCCACGTTCAATACCCTCGGCTGAAGAAGAAGACTTTAACTACCGATTTAATGCTATTAGCTTCAAAGGGAAGGAGGGATGGATTGTTGGCAAACCTGCGAT
TCTGTTATACACTTCGAATGCTAGAGAAAGCTGGGAAAGGATACCTCTTAGTGCTCAGCTTCCTGGAGATATGGTCTACATTAAAGCAACTGGAGAAAAAAGTGCTGAGA
TGGTTACTGATGAAGGTGCCATGTATGTTACATCAAACAAGGGATATAATTGGAAGGGTGCCATATATGTTACATCAAACAAGGGATATAATTGGAAGGCTGCAGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGGCTCCACGTTCAATACCCTCGGCTGAAGAAGAAGACTTTAACTACCGATTTAATGCTATTAGCTTCAAAGGGAAGGAGGGATGGATTGTTGGCAAACCTGCGAT
TCTGTTATACACTTCGAATGCTAGAGAAAGCTGGGAAAGGATACCTCTTAGTGCTCAGCTTCCTGGAGATATGGTCTACATTAAAGCAACTGGAGAAAAAAGTGCTGAGA
TGGTTACTGATGAAGGTGCCATGTATGTTACATCAAACAAGGGATATAATTGGAAGGGTGCCATATATGTTACATCAAACAAGGGATATAATTGGAAGGCTGCAGTTTAG
Protein sequenceShow/hide protein sequence
MWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNKGYNWKAAV