CuGenDBv2

Gene ID	Lcy08g007770
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	Chr08:10583117..10583578
RNA-Seq Expression	Lcy08g007770
Synteny	Lcy08g007770
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0044260 - cellular macromolecule metabolic process (biological process) GO:0097159 - organic cyclic compound binding (molecular function) GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.8e-28

47.26

Show/hide

Query:  ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSE
        EN+ +SS    I    SGN++S +KLND  +L WKFQ+L A++ +DLEN ++ + E P ++L    +  ++     NP +  +++QDRL+SSWLLGSMSE
Subjt:  ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSE

Query:  EIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM
        EI+NQM+ CKSAKEIW++L   FSSR  A+ M++K +L ++KKG+M
Subjt:  EIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM

KAA0053143.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

5.3e-27

43.62

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Query:  LAENSSS-SSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGS
        ++ NSS    ++  + +  SGN++S +KL+D N+L WKFQ+L A++ +DLEN  + + E P ++L    +  ++  +  NPE+  +++ +RL+S WLLGS
Subjt:  LAENSSS-SSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGS

Query:  MSEEIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM
        MSEEI+NQM+ CKSAKEIW +L   FSSR  A+ M++K +L ++KKG+M
Subjt:  MSEEIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM

KAA0067213.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

9.0e-27

45.89

Show/hide

Query:  ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSE
        EN+ +SS    I    S N++S +KL+D N+L WKFQ+L A++ +DLEN ++ + E P ++L    +  ++  +  NP +  +++QDRL+SSWLLGSMSE
Subjt:  ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSE

Query:  EIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM
        EI+NQM+ CKSAKEIW +L   FSSR  A+ M++K +L ++KK +M
Subjt:  EIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.8e-28

47.26

Show/hide

Query:  ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSE
        EN+ +SS    I    SGN++S +KLND  +L WKFQ+L A++ +DLEN ++ + E P ++L    +  ++     NP +  +++QDRL+SSWLLGSMSE
Subjt:  ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSE

Query:  EIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM
        EI+NQM+ CKSAKEIW++L   FSSR  A+ M++K +L ++KKG+M
Subjt:  EIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM

TYK18917.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

9.0e-27

45.89

Show/hide

Query:  ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSE
        EN+ +SS    I    S N++S +KL+D N+L WKFQ+L A++ +DLEN ++ + E P ++L    +  ++  +  NP +  +++QDRL+SSWLLGSMSE
Subjt:  ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSE

Query:  EIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM
        EI+NQM+ CKSAKEIW +L   FSSR  A+ M++K +L ++KK +M
Subjt:  EIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-28

47.26

Show/hide

Query:  ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSE
        EN+ +SS    I    SGN++S +KLND  +L WKFQ+L A++ +DLEN ++ + E P ++L    +  ++     NP +  +++QDRL+SSWLLGSMSE
Subjt:  ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSE

Query:  EIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM
        EI+NQM+ CKSAKEIW++L   FSSR  A+ M++K +L ++KKG+M
Subjt:  EIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM

A0A5A7UB21 Keratin, type II cytoskeletal 1-like

2.6e-27

43.62

Show/hide

Query:  LAENSSS-SSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGS
        ++ NSS    ++  + +  SGN++S +KL+D N+L WKFQ+L A++ +DLEN  + + E P ++L    +  ++  +  NPE+  +++ +RL+S WLLGS
Subjt:  LAENSSS-SSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGS

Query:  MSEEIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM
        MSEEI+NQM+ CKSAKEIW +L   FSSR  A+ M++K +L ++KKG+M
Subjt:  MSEEIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM

A0A5A7VGJ8 Keratin, type II cytoskeletal 1-like

4.4e-27

45.89

Show/hide

Query:  ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSE
        EN+ +SS    I    S N++S +KL+D N+L WKFQ+L A++ +DLEN ++ + E P ++L    +  ++  +  NP +  +++QDRL+SSWLLGSMSE
Subjt:  ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSE

Query:  EIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM
        EI+NQM+ CKSAKEIW +L   FSSR  A+ M++K +L ++KK +M
Subjt:  EIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-28

47.26

Show/hide

Query:  ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSE
        EN+ +SS    I    SGN++S +KLND  +L WKFQ+L A++ +DLEN ++ + E P ++L    +  ++     NP +  +++QDRL+SSWLLGSMSE
Subjt:  ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSE

Query:  EIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM
        EI+NQM+ CKSAKEIW++L   FSSR  A+ M++K +L ++KKG+M
Subjt:  EIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM

A0A5D3D5T2 Keratin, type II cytoskeletal 1-like

4.4e-27

45.89

Show/hide

Query:  ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSE
        EN+ +SS    I    S N++S +KL+D N+L WKFQ+L A++ +DLEN ++ + E P ++L    +  ++  +  NP +  +++QDRL+SSWLLGSMSE
Subjt:  ENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSE

Query:  EIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM
        EI+NQM+ CKSAKEIW +L   FSSR  A+ M++K +L ++KK +M
Subjt:  EIVNQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

4.8e-07

27.01

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Query:  DSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMI
        ++ SIL  N  N     KL   NYL W  QV     G++L   +     +P   +  + A +       NP++ R+++QD+L+ S +LG++S  +   + 
Subjt:  DSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMI

Query:  DCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKG
           +A +IW++L + +++ +   V + +TQL+   KG
Subjt:  DCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKG

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.3e-04

23.08

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Query:  NQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDS
        N  +  KL   NYL W  QV     G++L   +     +P   +  +   +       NP++ R+++QD+L+ S +LG++S  +   +    +A +IW++
Subjt:  NQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIVNQMIDCKSAKEIWDS

Query:  LARTFSSRNTAKVMEYK
        L + +++ +   V + +
Subjt:  LARTFSSRNTAKVMEYK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCAAACCCTTCCGCTAGCCGAGAATTCATCTTCCTCCTCTGATTCTTTGTCAATATTGATGTCAAATTCAGGTAATCAAGTGTCTACTATGAAATTGAATGATCAAAA
CTACTTAGCATGGAAGTTCCAAGTTTTGATTGCAATTCAAGGGCACGATCTTGAGAATCATATCCAAGAAGATCCAGAAATTCCAGAAGAATTTCTTCAAGAAGAAAATG
CTGAAAAGTCAACTATCAAGAAGATAAAGAATCCAGAGTTCCTTAGATATCAAAAACAAGACAGATTGTTATCCTCATGGTTGCTGGGTTCGATGTCAGAAGAAATTGTA
AATCAAATGATTGATTGCAAATCGGCCAAAGAAATCTGGGATTCACTTGCAAGAACATTCTCATCAAGAAATACAGCCAAGGTTATGGAGTATAAGACACAGCTTCAATC
TCTCAAGAAAGGCAACATGTGA

mRNA sequence

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Protein sequence

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MQTLPLAENSSSSSDSLSILMSNSGNQVSTMKLNDQNYLAWKFQVLIAIQGHDLENHIQEDPEIPEEFLQEENAEKSTIKKIKNPEFLRYQKQDRLLSSWLLGSMSEEIV
NQMIDCKSAKEIWDSLARTFSSRNTAKVMEYKTQLQSLKKGNM

Lcy08g007770 (gene) of Sponge gourd (P93075) v1 genome