CuGenDBv2

Gene ID	Lcy08g009100
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	40S ribosomal protein S13
Genome location	Chr08:20262739..20274179
RNA-Seq Expression	Lcy08g009100
Synteny	Lcy08g009100
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005730 - nucleolus (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000589 - Ribosomal protein S15 IPR009068 - S15/NS1, RNA-binding IPR023029 - Ribosomal protein S15P

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8022421.1 hypothetical protein FH972_008223 [Carpinus fangiana]

6.8e-25

87.14

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Query:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLDTLEG
        LKAHG+APEI EDLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP    +EG
Subjt:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLDTLEG

KAF5732300.1 hypothetical protein HS088_TW18G00994 [Tripterygium wilfordii]

2.6e-24

89.39

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Query:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLD
        LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP  D
Subjt:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLD

MBA0680249.1 hypothetical protein [Gossypium aridum]

2.0e-24

82.19

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Query:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLDTLEGEVG
        LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP +D  +   G
Subjt:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLDTLEGEVG

MBA0736994.1 hypothetical protein [Gossypium gossypioides]

2.0e-24

82.19

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Query:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLDTLEGEVG
        LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP +D  +   G
Subjt:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLDTLEGEVG

XP_022143980.1 40S ribosomal protein S13-like [Momordica charantia]

4.4e-24

93.65

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Query:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP
        LKAHG+APEI EDLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP
Subjt:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP

TrEMBL top hits

e value

%identity

Alignment

A0A5N6R135 Ribosomal_S13_N domain-containing protein

3.3e-25

87.14

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Query:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLDTLEG
        LKAHG+APEI EDLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP    +EG
Subjt:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLDTLEG

A0A7J7CDY4 Ribosomal_S13_N domain-containing protein

1.2e-24

89.39

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Query:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLD
        LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP  D
Subjt:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLD

A0A7J8X0C8 Ribosomal_S13_N domain-containing protein

9.6e-25

82.19

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Query:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLDTLEGEVG
        LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP +D  +   G
Subjt:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLDTLEGEVG

A0A7J9BLE2 Ribosomal_S13_N domain-containing protein (Fragment)

9.6e-25

82.19

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Query:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLDTLEGEVG
        LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP +D  +   G
Subjt:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLDTLEGEVG

A0A7J9IX07 Ribosomal_S13_N domain-containing protein

9.6e-25

82.19

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Query:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLDTLEGEVG
        LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP +D  +   G
Subjt:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLDTLEGEVG

SwissProt top hits

e value

%identity

Alignment

P46298 40S ribosomal protein S13

6.4e-26

92.06

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Query:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP
        LKAHG+APEI EDLYHLIKK VSIRKHLER RKDKDSKFRLILVESRIH LARYYKKTKKLPP
Subjt:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP

P59223 40S ribosomal protein S13-1

1.3e-26

92.06

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Query:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP
        LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP
Subjt:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP

P59224 40S ribosomal protein S13-2

1.3e-26

92.06

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Query:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP
        LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP
Subjt:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP

P62302 40S ribosomal protein S13

5.8e-27

93.65

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Query:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP
        LKAHG+APEI EDLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP
Subjt:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP

Q69UI2 40S ribosomal protein S13-1

3.2e-25

88.89

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Query:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP
        LKAHG+APEI EDLY LIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYK+TKKLPP
Subjt:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP

Arabidopsis top hits

e value

%identity

Alignment

AT3G60770.1 Ribosomal protein S13/S15

9.1e-28

92.06

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Query:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP
        LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP
Subjt:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP

AT4G00100.1 ribosomal protein S13A

9.1e-28

92.06

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Query:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP
        LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKKLPP
Subjt:  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPP

Sequences

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CDS sequence

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ATGAATTGTGTTGTCTTATTTTTGCTGCTTGATATGCTTTTCACGCGAGTTCTACAGGATTGCTCAGATGAAAAGTGTAACTGGGAGCAAGATCTTAAGGCTCATGGGAT
AGCTCCTGAAATCTCGGAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAGAAAAGACAAGGATTCCAAGTTCAGGTTGATTT
TGGTGGAGAGTAGGATCCATCACCTAGCCCGGTATTACAAAAAGACAAAGAAGCTTCCCCCCTGTTTGGACACCTTGGAAGGTGAGGTTGGTTGCGGAGATCAGTGTGAG
AAGGCCTTGGAAGGTAAGAATCTACAATCTTCGGAGATTTGA

mRNA sequence

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Protein sequence

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MNCVVLFLLLDMLFTRVLQDCSDEKCNWEQDLKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLDTLEGEVGCGDQCE
KALEGKNLQSSEI

Lcy08g009100 (gene) of Sponge gourd (P93075) v1 genome