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Lcy08g009200 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy08g009200
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description40S ribosomal protein S13
Genome locationChr08:21555254..21555441
RNA-Seq ExpressionLcy08g009200
SyntenyLcy08g009200
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR009068 - S15/NS1, RNA-binding
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3675381.1 40S ribosomal protein S13 [Capsicum annuum]2.5e-2083.61Show/hide
Query:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK
        LAPEIP+DLYHLIK VV+I+K LERNRKDK SKFRLILVE+RI+CL RYYKKTKK PPVWK
Subjt:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK

PHU14948.1 40S ribosomal protein S13 [Capsicum chinense]7.3e-2083.33Show/hide
Query:  APEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK
        APEIP+DLYHLIK VV+I+K LERNRKDK SKFRLILVE+RI+CL RYYKKTKK PPVWK
Subjt:  APEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK

PNY08741.1 40S ribosomal protein s13-like [Trifolium pratense]1.2e-1985.25Show/hide
Query:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK
        LAPEIP+DLYHLIK  VSI+K LERNRKDK SKFRLILVESRI+ LARYYKKTKK PPVWK
Subjt:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK

PPD86677.1 hypothetical protein GOBAR_DD16380 [Gossypium barbadense]1.1e-2085.25Show/hide
Query:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK
        LAPEIP+DLYHLIK  V+I+K LERNRKDK SKFRLILVESRI+CLARYYKKTKK PPVWK
Subjt:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK

XP_022143980.1 40S ribosomal protein S13-like [Momordica charantia]1.2e-1985.25Show/hide
Query:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK
        LAPEIP+DLYHLIK  VSI+K LERNRKDK SKFRLILVESRI+ LARYYKKTKK PPVWK
Subjt:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK

TrEMBL top hitse value%identityAlignment
A0A1S3UTL9 40S ribosomal protein S136.0e-2085.25Show/hide
Query:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK
        LAPEIP+DLYHLIK  VSI+K LERNRKDK SKFRLILVESRI+ LARYYKKTKK PPVWK
Subjt:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK

A0A2G3C894 30S ribosomal protein S15, chloroplastic3.5e-2083.33Show/hide
Query:  APEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK
        APEIP+DLYHLIK VV+I+K LERNRKDK SKFRLILVE+RI+CL RYYKKTKK PPVWK
Subjt:  APEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK

A0A6J1HYG9 40S ribosomal protein S13-like6.0e-2085.25Show/hide
Query:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK
        LAPEIP+DLYHLIK  VSI+K LERNRKDK SKFRLILVESRI+ LARYYKKTKK PPVWK
Subjt:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK

A0A6J1KV63 40S ribosomal protein S13-like6.0e-2085.25Show/hide
Query:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK
        LAPEIP+DLYHLIK  VSI+K LERNRKDK SKFRLILVESRI+ LARYYKKTKK PPVWK
Subjt:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK

M5X0Z4 Ribosomal_S13_N domain-containing protein6.0e-2085.25Show/hide
Query:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK
        LAPEIP+DLYHLIK  VSI+K LERNRKDK SKFRLILVESRI+ LARYYKKTKK PPVWK
Subjt:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S131.8e-2183.61Show/hide
Query:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK
        LAPEIP+DLYHLIK  VSI+K LER RKDK SKFRLILVESRI+ LARYYKKTKK PPVWK
Subjt:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK

P59223 40S ribosomal protein S13-13.6e-2283.61Show/hide
Query:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK
        LAPEIP+DLYHLIK  V+I+K LERNRKDK SKFRLILVESRI+ LARYYKKTKK PPVWK
Subjt:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK

P59224 40S ribosomal protein S13-23.6e-2283.61Show/hide
Query:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK
        LAPEIP+DLYHLIK  V+I+K LERNRKDK SKFRLILVESRI+ LARYYKKTKK PPVWK
Subjt:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK

P62302 40S ribosomal protein S131.6e-2285.25Show/hide
Query:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK
        LAPEIP+DLYHLIK  VSI+K LERNRKDK SKFRLILVESRI+ LARYYKKTKK PPVWK
Subjt:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK

Q69UI2 40S ribosomal protein S13-12.6e-2078.69Show/hide
Query:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK
        LAPEIP+DLY LIK  V+I+K LERNRKDK SKFRLILVESRI+ LARYYK+TKK PP WK
Subjt:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S152.6e-2383.61Show/hide
Query:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK
        LAPEIP+DLYHLIK  V+I+K LERNRKDK SKFRLILVESRI+ LARYYKKTKK PPVWK
Subjt:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK

AT4G00100.1 ribosomal protein S13A2.6e-2383.61Show/hide
Query:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK
        LAPEIP+DLYHLIK  V+I+K LERNRKDK SKFRLILVESRI+ LARYYKKTKK PPVWK
Subjt:  LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGCTAGCTCCTGAAATCCCGAAGGATCTTTACCATCTCATCAAGAACGTTGTTTCAATCAAAAAGCAGTTGGAGAGAAACAGGAAAGACAAGCATTCCAAGTTCAGGTTG
ATTTTGGTGGAGAGCAGGATCTATTGCCTGGCCCGGTATTACAAGAAGACAAAGAAGTTTCCCCCTGTTTGGAAGTAG
mRNA sequenceShow/hide mRNA sequence
GGCTAGCTCCTGAAATCCCGAAGGATCTTTACCATCTCATCAAGAACGTTGTTTCAATCAAAAAGCAGTTGGAGAGAAACAGGAAAGACAAGCATTCCAAGTTCAGGTTG
ATTTTGGTGGAGAGCAGGATCTATTGCCTGGCCCGGTATTACAAGAAGACAAAGAAGTTTCCCCCTGTTTGGAAGTAG
Protein sequenceShow/hide protein sequence
LAPEIPKDLYHLIKNVVSIKKQLERNRKDKHSKFRLILVESRIYCLARYYKKTKKFPPVWK