CuGenDBv2

Gene ID	Lcy08g009630
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	BED-type domain-containing protein
Genome location	Chr08:26482823..26485530
RNA-Seq Expression	Lcy08g009630
Synteny	Lcy08g009630
Gene Ontology terms	GO:0009791 - post-embryonic development (biological process) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR003656 - Zinc finger, BED-type IPR036236 - Zinc finger C2H2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ACX85638.1 putative transposase [Cucumis melo]

1.6e-62

84.06

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Query:  LLGKRKPTKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRNGTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLTAASFTQENCRMMLAYMVIL
        +LGKRKP KP S  WEHFI+VEGCDP+Y RAACK+CGA+YACDSKRNGTTN+KRHLEKCK Y +  ED VEGEGDSESNL  ASFTQENCR MLA MVIL
Subjt:  LLGKRKPTKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRNGTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLTAASFTQENCRMMLAYMVIL

Query:  DELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQ
        DELPFKFVESEGFH+FCRALNPKFVIPSRVTVAKDCFQ
Subjt:  DELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQ

KAA0026183.1 putative transposase [Cucumis melo var. makuwa]

1.6e-62

84.06

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Query:  LLGKRKPTKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRNGTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLTAASFTQENCRMMLAYMVIL
        +LGKRKP KP S  WEHFI+VEGCDP+Y RAACK+CGA+YACDSKRNGTTN+KRHLEKCK Y +  ED VEGEGDSESNL  ASFTQENCR MLA MVIL
Subjt:  LLGKRKPTKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRNGTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLTAASFTQENCRMMLAYMVIL

Query:  DELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQ
        DELPFKFVESEGFH+FCRALNPKFVIPSRVTVAKDCFQ
Subjt:  DELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQ

TYK06161.1 putative transposase [Cucumis melo var. makuwa]

5.9e-62

83.33

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Query:  LLGKRKPTKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRNGTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLTAASFTQENCRMMLAYMVIL
        +LGKRKP KP S  WEHFI+VEGCDP+Y RAACK+CG +YACDSKRNGTTN+KRHLEKCK Y +  ED VEGEGDSES+L AASFTQENCR MLA MVIL
Subjt:  LLGKRKPTKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRNGTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLTAASFTQENCRMMLAYMVIL

Query:  DELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQ
        DELPFKFVESEGFH+FCRALNPKFVIPSRVTVAKDCFQ
Subjt:  DELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQ

TYK30761.1 putative transposase [Cucumis melo var. makuwa]

9.5e-60

81.88

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Query:  LLGKRKPTKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRNGTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLTAASFTQENCRMMLAYMVIL
        +LGKRK  KP   AWEHFI+VEGCDP+Y RAACK+C A+YACDSKRNGTTN+KRHLEKCK Y +  ED VEGEGDSES+  AASFTQENCR MLA MVIL
Subjt:  LLGKRKPTKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRNGTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLTAASFTQENCRMMLAYMVIL

Query:  DELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQ
        DELPFKFVESEGFH+FCRALNPKFVIPSRVTVAKDCFQ
Subjt:  DELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQ

TYK30776.1 putative transposase [Cucumis melo var. makuwa]

1.6e-62

84.06

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Query:  LLGKRKPTKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRNGTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLTAASFTQENCRMMLAYMVIL
        +LGKRKP KP S  WEHFI+VEGCDP+Y RAACK+CGA+YACDSKRNGTTN+KRHLEKCK Y +  ED VEGEGDSESNL  ASFTQENCR MLA MVIL
Subjt:  LLGKRKPTKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRNGTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLTAASFTQENCRMMLAYMVIL

Query:  DELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQ
        DELPFKFVESEGFH+FCRALNPKFVIPSRVTVAKDCFQ
Subjt:  DELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SNJ1 Putative transposase

7.5e-63

84.06

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Query:  LLGKRKPTKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRNGTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLTAASFTQENCRMMLAYMVIL
        +LGKRKP KP S  WEHFI+VEGCDP+Y RAACK+CGA+YACDSKRNGTTN+KRHLEKCK Y +  ED VEGEGDSESNL  ASFTQENCR MLA MVIL
Subjt:  LLGKRKPTKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRNGTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLTAASFTQENCRMMLAYMVIL

Query:  DELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQ
        DELPFKFVESEGFH+FCRALNPKFVIPSRVTVAKDCFQ
Subjt:  DELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQ

A0A5D3C2L4 Putative transposase

2.9e-62

83.33

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Query:  LLGKRKPTKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRNGTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLTAASFTQENCRMMLAYMVIL
        +LGKRKP KP S  WEHFI+VEGCDP+Y RAACK+CG +YACDSKRNGTTN+KRHLEKCK Y +  ED VEGEGDSES+L AASFTQENCR MLA MVIL
Subjt:  LLGKRKPTKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRNGTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLTAASFTQENCRMMLAYMVIL

Query:  DELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQ
        DELPFKFVESEGFH+FCRALNPKFVIPSRVTVAKDCFQ
Subjt:  DELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQ

A0A5D3E4G3 Putative transposase

7.5e-63

84.06

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Query:  LLGKRKPTKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRNGTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLTAASFTQENCRMMLAYMVIL
        +LGKRKP KP S  WEHFI+VEGCDP+Y RAACK+CGA+YACDSKRNGTTN+KRHLEKCK Y +  ED VEGEGDSESNL  ASFTQENCR MLA MVIL
Subjt:  LLGKRKPTKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRNGTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLTAASFTQENCRMMLAYMVIL

Query:  DELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQ
        DELPFKFVESEGFH+FCRALNPKFVIPSRVTVAKDCFQ
Subjt:  DELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQ

A0A5D3E590 Putative transposase

4.6e-60

81.88

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Query:  LLGKRKPTKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRNGTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLTAASFTQENCRMMLAYMVIL
        +LGKRK  KP   AWEHFI+VEGCDP+Y RAACK+C A+YACDSKRNGTTN+KRHLEKCK Y +  ED VEGEGDSES+  AASFTQENCR MLA MVIL
Subjt:  LLGKRKPTKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRNGTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLTAASFTQENCRMMLAYMVIL

Query:  DELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQ
        DELPFKFVESEGFH+FCRALNPKFVIPSRVTVAKDCFQ
Subjt:  DELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQ

D0UIX2 Putative transposase

7.5e-63

84.06

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Query:  LLGKRKPTKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRNGTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLTAASFTQENCRMMLAYMVIL
        +LGKRKP KP S  WEHFI+VEGCDP+Y RAACK+CGA+YACDSKRNGTTN+KRHLEKCK Y +  ED VEGEGDSESNL  ASFTQENCR MLA MVIL
Subjt:  LLGKRKPTKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRNGTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLTAASFTQENCRMMLAYMVIL

Query:  DELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQ
        DELPFKFVESEGFH+FCRALNPKFVIPSRVTVAKDCFQ
Subjt:  DELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQ

SwissProt top hits

e value

%identity

Alignment

O75132 Zinc finger BED domain-containing protein 4

2.6e-04

24.48

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Query:  TKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRN--GTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLT--------AASFTQENCRM-----
        +K  S  W HF     C  +  +  C +CG T +   K    GT+ + RHL++  +   K+E        S             A+SF   N +      
Subjt:  TKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRN--GTTNMKRHLEKCKTYTSKSEDYVEGEGDSESNLT--------AASFTQENCRM-----

Query:  -------MLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPS
               ++A M+ LD  P+ FV++ GF++    L P++ +P+
Subjt:  -------MLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPS

Q75HY5 Zinc finger BED domain-containing protein RICESLEEPER 3

1.8e-08

32.59

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Query:  SDAWEHFIRVEGCDPEYLRAACKYCGAT--YACDSKRNGTTNMKRHLEKCKTYTSKSEDYV-----------EGEGDSE---------SNLTAASFTQEN
        S  WEHF  +E       RA+C  C  T  Y+C SK +GT+++KRH+        K+ED             +GEG +E         +    A F Q+ 
Subjt:  SDAWEHFIRVEGCDPEYLRAACKYCGAT--YACDSKRNGTTNMKRHLEKCKTYTSKSEDYV-----------EGEGDSE---------SNLTAASFTQEN

Query:  CRMMLAYMVILDELPFKFVESEGFHKFCRALNPKF
            LA M+IL + P   VE  GF  F  +L P+F
Subjt:  CRMMLAYMVILDELPFKFVESEGFHKFCRALNPKF

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTATATTCAACTTTTGATATCACTTATCAGGTTGTGTGAAGGTGGAGAATTGCTAGGAAGAATAGTGTCAAGCCGTCGAATTGGTTTTGGTGGAAGTACGAGTAGTAA
AGTAGGATTGTTAGGGAAAAGGAAACCTACTAAACCAGCTTCAGATGCTTGGGAACATTTTATTAGAGTAGAAGGATGTGATCCTGAATATCTTAGGGCTGCTTGTAAAT
ATTGTGGAGCTACATATGCATGTGACTCTAAGAGAAATGGGACAACAAATATGAAAAGACACTTAGAGAAATGTAAGACGTATACAAGTAAGTCAGAGGATTATGTTGAA
GGAGAGGGGGATTCTGAAAGTAACTTGACAGCTGCATCTTTCACTCAAGAGAATTGTAGAATGATGCTTGCTTACATGGTCATATTAGATGAGTTACCCTTTAAGTTTGT
AGAAAGCGAAGGATTTCATAAATTTTGCAGGGCATTAAATCCTAAGTTTGTAATTCCATCAAGAGTCACTGTTGCAAAAGATTGTTTTCAATGTACATGA

mRNA sequence

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Protein sequence

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MYIQLLISLIRLCEGGELLGRIVSSRRIGFGGSTSSKVGLLGKRKPTKPASDAWEHFIRVEGCDPEYLRAACKYCGATYACDSKRNGTTNMKRHLEKCKTYTSKSEDYVE
GEGDSESNLTAASFTQENCRMMLAYMVILDELPFKFVESEGFHKFCRALNPKFVIPSRVTVAKDCFQCT

Lcy08g009630 (gene) of Sponge gourd (P93075) v1 genome