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Lcy08g013080 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy08g013080
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr08:42682471..42683036
RNA-Seq ExpressionLcy08g013080
SyntenyLcy08g013080
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF28878.1 conserved hypothetical protein [Ricinus communis]7.1e-0844.44Show/hide
Query:  AVRDSLLLAKDGGFLQLEVESDSASVVSLLRSNACEKSEVGKIVDEIRQIAKEFQSCSFSWCSRSRNVVAHKAARAALLGELNGVWIEDV
        AVR  LLLAKD GF  L+VESD+A  +S+L+ N    +E+G I+D+I+ I ++F S  +S  +R  N VAH  A +      + VWIE+V
Subjt:  AVRDSLLLAKDGGFLQLEVESDSASVVSLLRSNACEKSEVGKIVDEIRQIAKEFQSCSFSWCSRSRNVVAHKAARAALLGELNGVWIEDV

KAG2565207.1 hypothetical protein PVAP13_7NG002334 [Panicum virgatum]4.1e-0835.71Show/hide
Query:  AVRDSLLLAKDGGFLQLEVESDSASVVSLLRSNACEKSEVGKIVDEIRQIAKEFQSCSFSWCSRSRNVVAHKAARAALLGELNGVWIEDVSAPLRHAL
        A+RD LLLA+  G  ++++++D   VV  +       + +  I DE  ++ ++F + S S C+R  NVVAH+ AR A+L + + VWI+D  A +R +L
Subjt:  AVRDSLLLAKDGGFLQLEVESDSASVVSLLRSNACEKSEVGKIVDEIRQIAKEFQSCSFSWCSRSRNVVAHKAARAALLGELNGVWIEDVSAPLRHAL

XP_023881690.1 uncharacterized protein LOC111994061 [Quercus suber]6.8e-1140.71Show/hide
Query:  MAVRDSLLLAKDGGFLQLEVESDSASVVSLLRSNACEKSEVGKIVDEIRQIAKEFQSCSFSWCSRSRNVVAHKAARAA--LLGELNGVWIEDVSAPLRHA
        +A R ++  A D GF+ L +E D+A+V+  + S+  ++S +G I D+IR +A  F+SC+F    RS N VAH  AR A  L+ EL  VW+E+   P   A
Subjt:  MAVRDSLLLAKDGGFLQLEVESDSASVVSLLRSNACEKSEVGKIVDEIRQIAKEFQSCSFSWCSRSRNVVAHKAARAA--LLGELNGVWIEDVSAPLRHA

Query:  LEAERLDRSRVVE
        LEA  LD S +++
Subjt:  LEAERLDRSRVVE

XP_023905314.1 uncharacterized protein LOC112017083 [Quercus suber]1.3e-0941.28Show/hide
Query:  MAVRDSLLLAKDGGFLQLEVESDSASVVSLLRSNACEKSEVGKIVDEIRQIAKEFQSCSFSWCSRSRNVVAHKAARAA--LLGELNGVWIEDVSAPLRHA
        +A R ++  A D GF+ L +E D+A+V+  + S+  + S +G I D+IR +A  F+SC+F    RS NVVAH  AR A  ++ EL  VW+++   P   A
Subjt:  MAVRDSLLLAKDGGFLQLEVESDSASVVSLLRSNACEKSEVGKIVDEIRQIAKEFQSCSFSWCSRSRNVVAHKAARAA--LLGELNGVWIEDVSAPLRHA

Query:  LEAERLDRS
        LEA  LD S
Subjt:  LEAERLDRS

XP_024317835.1 uncharacterized protein LOC112271862 [Brachypodium distachyon]2.7e-0736.36Show/hide
Query:  MAVRDSLLLAKDGGFLQLEVESDSASVVSLLRSNACEKSEVGKIVDEIRQIAKEFQSCSFSWCSRSRNVVAHKAARAALLGELNGVWI
        +A+RD+  LAK+  F ++ +E+D A +V L R+ + ++S VG I+DEI + ++ F SC   +  R  N VAH+ AR+A+   ++  W+
Subjt:  MAVRDSLLLAKDGGFLQLEVESDSASVVSLLRSNACEKSEVGKIVDEIRQIAKEFQSCSFSWCSRSRNVVAHKAARAALLGELNGVWI

TrEMBL top hitse value%identityAlignment
A0A2K2D3A0 RNase H domain-containing protein1.3e-0736.36Show/hide
Query:  MAVRDSLLLAKDGGFLQLEVESDSASVVSLLRSNACEKSEVGKIVDEIRQIAKEFQSCSFSWCSRSRNVVAHKAARAALLGELNGVWI
        +A+RD+  LAK+  F ++ +E+D A +V L R+ + ++S VG I+DEI + ++ F SC   +  R  N VAH+ AR+A+   ++  W+
Subjt:  MAVRDSLLLAKDGGFLQLEVESDSASVVSLLRSNACEKSEVGKIVDEIRQIAKEFQSCSFSWCSRSRNVVAHKAARAALLGELNGVWI

A0A2N9EYC3 Reverse transcriptase domain-containing protein1.3e-0735.71Show/hide
Query:  AVRDSLLLAKDGGFLQLEVESDSASVVSLLRSNACEKSEVGKIVDEIRQIAKEFQSCSFSWCSRSRNVVAHKAARAALLGELNGVWIEDVSAPLRHAL
        A R ++  AKD GF+ +++E DS S+V  +       +  G I+++IRQIA+  QS  F    R  NV+AH  A+ A + +    W+E V   L H L
Subjt:  AVRDSLLLAKDGGFLQLEVESDSASVVSLLRSNACEKSEVGKIVDEIRQIAKEFQSCSFSWCSRSRNVVAHKAARAALLGELNGVWIEDVSAPLRHAL

A0A2N9G0G1 Uncharacterized protein6.4e-0733.67Show/hide
Query:  AVRDSLLLAKDGGFLQLEVESDSASVVSLLRSNACEKSEVGKIVDEIRQIAKEFQSCSFSWCSRSRNVVAHKAARAALLGELNGVWIEDVSAPLRHAL
        A R ++  AKD GF  +++E DS S+V  ++      +  G ++++IR IA+  QS  F    R  NV+AH  A+ A + +    W+E V   L H L
Subjt:  AVRDSLLLAKDGGFLQLEVESDSASVVSLLRSNACEKSEVGKIVDEIRQIAKEFQSCSFSWCSRSRNVVAHKAARAALLGELNGVWIEDVSAPLRHAL

A0A2N9IYC8 Reverse transcriptase domain-containing protein2.9e-0735.71Show/hide
Query:  AVRDSLLLAKDGGFLQLEVESDSASVVSLLRSNACEKSEVGKIVDEIRQIAKEFQSCSFSWCSRSRNVVAHKAARAALLGELNGVWIEDVSAPLRHAL
        A R ++  AKD GF+ +++E DS S+V  +       +  G I+++IRQIA+  QS  F    R  NV+AH  A+ A + +    W+E V   L H L
Subjt:  AVRDSLLLAKDGGFLQLEVESDSASVVSLLRSNACEKSEVGKIVDEIRQIAKEFQSCSFSWCSRSRNVVAHKAARAALLGELNGVWIEDVSAPLRHAL

B9T5J0 RNase H domain-containing protein3.4e-0844.44Show/hide
Query:  AVRDSLLLAKDGGFLQLEVESDSASVVSLLRSNACEKSEVGKIVDEIRQIAKEFQSCSFSWCSRSRNVVAHKAARAALLGELNGVWIEDV
        AVR  LLLAKD GF  L+VESD+A  +S+L+ N    +E+G I+D+I+ I ++F S  +S  +R  N VAH  A +      + VWIE+V
Subjt:  AVRDSLLLAKDGGFLQLEVESDSASVVSLLRSNACEKSEVGKIVDEIRQIAKEFQSCSFSWCSRSRNVVAHKAARAALLGELNGVWIEDV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTCCGAGATAGCCTTCTGTTGGCGAAAGATGGTGGTTTCTTGCAGCTGGAGGTGGAATCTGACTCGGCCAGTGTGGTATCGCTGCTCCGATCGAACGCT
TGTGAAAAATCTGAGGTGGGCAAGATTGTGGACGAAATTCGCCAAATTGCCAAGGAATTCCAGTCGTGCTCCTTTTCATGGTGCTCCAGGTCGAGGAATGTGGTG
GCCCATAAAGCCGCAAGAGCGGCGCTGTTGGGTGAGCTGAACGGTGTATGGATTGAAGATGTGTCGGCGCCGCTGCGTCATGCTCTTGAAGCTGAGCGTTTAGAC
AGGTCGAGGGTTGTTGAGTTGCGTTGTCTGTAG
mRNA sequenceShow/hide mRNA sequence
GTGAAAACATCTCAAGAATATACACAGATTTCCTTCTTCCTCTCTGTCTGCTTTTACTTGGTTGAAGAAAACCCCCTTTGTTCAAGATGTGGATGTGTTGGAGGC
GATGGCTGTCCGAGATAGCCTTCTGTTGGCGAAAGATGGTGGTTTCTTGCAGCTGGAGGTGGAATCTGACTCGGCCAGTGTGGTATCGCTGCTCCGATCGAACGC
TTGTGAAAAATCTGAGGTGGGCAAGATTGTGGACGAAATTCGCCAAATTGCCAAGGAATTCCAGTCGTGCTCCTTTTCATGGTGCTCCAGGTCGAGGAATGTGGT
GGCCCATAAAGCCGCAAGAGCGGCGCTGTTGGGTGAGCTGAACGGTGTATGGATTGAAGATGTGTCGGCGCCGCTGCGTCATGCTCTTGAAGCTGAGCGTTTAGA
CAGGTCGAGGGTTGTTGAGTTGCGTTGTCTGTAGCCCTTTTCTGTCGGTTTGCTTTGTTCAAAAAAAAAAAAACTTTTTATTCATTTTTCTCTCTTTTTTTTTTT
TTTATCTCTAACTATTTTTTTTCTCATTGATTGTTTGTTGT
Protein sequenceShow/hide protein sequence
MAVRDSLLLAKDGGFLQLEVESDSASVVSLLRSNACEKSEVGKIVDEIRQIAKEFQSCSFSWCSRSRNVVAHKAARAALLGELNGVWIEDVSAPLRHALEAERLD
RSRVVELRCL