; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy08g013100 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy08g013100
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr08:42708658..42709476
RNA-Seq ExpressionLcy08g013100
SyntenyLcy08g013100
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.8e-4434.31Show/hide
Query:  WTSNISIN---NRLFHLSEEKSLLVSDAWSPESQMWNIKLRRNLLDRELQSWTAFTSDLPRPGVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLNH
        W  N  ++    RLF LS  K   V + W+P S  W++ + R L D E   W    + LP P  ++G     W  +   IF T S +  +        N 
Subjt:  WTSNISIN---NRLFHLSEEKSLLVSDAWSPESQMWNIKLRRNLLDRELQSWTAFTSDLPRPGVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLNH

Query:  GESVFNNLWQASIPKRCKFFIWTLFHKKLNTGDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASSLRYKFNLAAGLQAPCPLSIDHLCAEAFAY
          +++  LW+   PK+CKFFIWTL H  +NT DRLQK+L    L+PN C+MC +S E I+HLF+HC ++  L  K        +  P  +  L     + 
Subjt:  GESVFNNLWQASIPKRCKFFIWTLFHKKLNTGDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASSLRYKFNLAAGLQAPCPLSIDHLCAEAFAY

Query:  KAKSQRDILCRNFFVAYTWSIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAFL
          ++Q+ ++  N      W IW ERN R+F+    +   +W+D+++   LWS  SK+FS YD  SIA+N  AF+
Subjt:  KAKSQRDILCRNFFVAYTWSIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAFL

KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.2e-4335.5Show/hide
Query:  RLFHLSEEKSLLVSDAWSPESQMWNIKLRRNLLDRELQSWTAFTSDLPRPGVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLN-HGESVFNNLWQA
        RLF LS  K   + D W+     W++  RR L + E   W    + L       GKD   W  +  G++T  S +  L+     +L+   ++ F NLW+ 
Subjt:  RLFHLSEEKSLLVSDAWSPESQMWNIKLRRNLLDRELQSWTAFTSDLPRPGVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLN-HGESVFNNLWQA

Query:  SIPKRCKFFIWTLFHKKLNTGDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASSLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKAKSQRDILCR
        SIPK+C FFIWTL +  +NT ++L K+L      P+ C MC+R+ E   HLF+ C  A S+    +        C LS   LC    ++K K++++++  
Subjt:  SIPKRCKFFIWTLFHKKLNTGDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASSLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKAKSQRDILCR

Query:  NFFVAYTWSIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF
        N + +  W+IW ERNAR+F G   ++ +IW+D  +LA LW+S S +FS Y A+SIA+N +AF
Subjt:  NFFVAYTWSIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.9e-4636.5Show/hide
Query:  WTSNISIN---NRLFHLSEEKSLLVSDAWSPESQMWNIKLRRNLLDRELQSWTAFTSDLPRPGVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLNH
        W  N  ++    RLF LS  K   V D W+P  + WNI + R L D E   W    + LP P   +G     W  +   IF T S +  L    A   N 
Subjt:  WTSNISIN---NRLFHLSEEKSLLVSDAWSPESQMWNIKLRRNLLDRELQSWTAFTSDLPRPGVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLNH

Query:  GESVFNNLWQASIPKRCKFFIWTLFHKKLNTGDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASSLRYKFNLAAGLQAPCPLSIDHLCAEAFAY
          S++  LW+   PK+CKFFIWTL H  +NT DRLQK+L    L+PN C+MC +S E I+HLF+HC ++  L  K        +  P  +  L     + 
Subjt:  GESVFNNLWQASIPKRCKFFIWTLFHKKLNTGDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASSLRYKFNLAAGLQAPCPLSIDHLCAEAFAY

Query:  KAKSQRDILCRNFFVAYTWSIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAFL
          K+Q+ ++  N      W IW ERN R+F+        +W+D ++   LWS  SK+FS YD  SIA+N  AF+
Subjt:  KAKSQRDILCRNFFVAYTWSIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAFL

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.9e-4636.5Show/hide
Query:  WTSNISIN---NRLFHLSEEKSLLVSDAWSPESQMWNIKLRRNLLDRELQSWTAFTSDLPRPGVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLNH
        W  N  ++    RLF LS  K   V D W+P  + WNI + R L D E   W    + LP P   +G     W  +   IF T S +  L    A   N 
Subjt:  WTSNISIN---NRLFHLSEEKSLLVSDAWSPESQMWNIKLRRNLLDRELQSWTAFTSDLPRPGVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLNH

Query:  GESVFNNLWQASIPKRCKFFIWTLFHKKLNTGDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASSLRYKFNLAAGLQAPCPLSIDHLCAEAFAY
          S++  LW+   PK+CKFFIWTL H  +NT DRLQK+L    L+PN C+MC +S E I+HLF+HC ++  L  K        +  P  +  L     + 
Subjt:  GESVFNNLWQASIPKRCKFFIWTLFHKKLNTGDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASSLRYKFNLAAGLQAPCPLSIDHLCAEAFAY

Query:  KAKSQRDILCRNFFVAYTWSIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAFL
          K+Q+ ++  N      W IW ERN R+F+        +W+D ++   LWS  SK+FS YD  SIA+N  AF+
Subjt:  KAKSQRDILCRNFFVAYTWSIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAFL

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.5e-4334.31Show/hide
Query:  WTSNISINN---RLFHLSEEKSLLVSDAWSPESQMWNIKLRRNLLDRELQSWTAFTSDLPRPGVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLN-
        W  N  +++   RL+ LS  K   + D W+     W++  RR L + EL  W    + +       GKD   W  +  G++T  S +  L+     +L+ 
Subjt:  WTSNISINN---RLFHLSEEKSLLVSDAWSPESQMWNIKLRRNLLDRELQSWTAFTSDLPRPGVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLN-

Query:  HGESVFNNLWQASIPKRCKFFIWTLFHKKLNTGDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASSLRYKFNLAAGLQAPCPLSIDHLCAEAFA
          ++ F NLW+ SIPK+C FFIWTL +  +NT ++L K+L      P+ C MC+R+ E   HLF+ C  A S+    +        C LS   LC    +
Subjt:  HGESVFNNLWQASIPKRCKFFIWTLFHKKLNTGDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASSLRYKFNLAAGLQAPCPLSIDHLCAEAFA

Query:  YKAKSQRDILCRNFFVAYTWSIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF
        +K K++++++  N + +  W+IW ERNAR+F G   ++ +IW+D  +LA LW+S S +FS Y A+SIA+N +AF
Subjt:  YKAKSQRDILCRNFFVAYTWSIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein1.8e-4434.31Show/hide
Query:  WTSNISIN---NRLFHLSEEKSLLVSDAWSPESQMWNIKLRRNLLDRELQSWTAFTSDLPRPGVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLNH
        W  N  ++    RLF LS  K   V + W+P S  W++ + R L D E   W    + LP P  ++G     W  +   IF T S +  +        N 
Subjt:  WTSNISIN---NRLFHLSEEKSLLVSDAWSPESQMWNIKLRRNLLDRELQSWTAFTSDLPRPGVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLNH

Query:  GESVFNNLWQASIPKRCKFFIWTLFHKKLNTGDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASSLRYKFNLAAGLQAPCPLSIDHLCAEAFAY
          +++  LW+   PK+CKFFIWTL H  +NT DRLQK+L    L+PN C+MC +S E I+HLF+HC ++  L  K        +  P  +  L     + 
Subjt:  GESVFNNLWQASIPKRCKFFIWTLFHKKLNTGDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASSLRYKFNLAAGLQAPCPLSIDHLCAEAFAY

Query:  KAKSQRDILCRNFFVAYTWSIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAFL
          ++Q+ ++  N      W IW ERN R+F+    +   +W+D+++   LWS  SK+FS YD  SIA+N  AF+
Subjt:  KAKSQRDILCRNFFVAYTWSIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAFL

A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein2.0e-4335.5Show/hide
Query:  RLFHLSEEKSLLVSDAWSPESQMWNIKLRRNLLDRELQSWTAFTSDLPRPGVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLN-HGESVFNNLWQA
        RLF LS  K   + D W+     W++  RR L + E   W    + L       GKD   W  +  G++T  S +  L+     +L+   ++ F NLW+ 
Subjt:  RLFHLSEEKSLLVSDAWSPESQMWNIKLRRNLLDRELQSWTAFTSDLPRPGVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLN-HGESVFNNLWQA

Query:  SIPKRCKFFIWTLFHKKLNTGDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASSLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKAKSQRDILCR
        SIPK+C FFIWTL +  +NT ++L K+L      P+ C MC+R+ E   HLF+ C  A S+    +        C LS   LC    ++K K++++++  
Subjt:  SIPKRCKFFIWTLFHKKLNTGDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASSLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKAKSQRDILCR

Query:  NFFVAYTWSIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF
        N + +  W+IW ERNAR+F G   ++ +IW+D  +LA LW+S S +FS Y A+SIA+N +AF
Subjt:  NFFVAYTWSIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein3.4e-4636.5Show/hide
Query:  WTSNISIN---NRLFHLSEEKSLLVSDAWSPESQMWNIKLRRNLLDRELQSWTAFTSDLPRPGVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLNH
        W  N  ++    RLF LS  K   V D W+P  + WNI + R L D E   W    + LP P   +G     W  +   IF T S +  L    A   N 
Subjt:  WTSNISIN---NRLFHLSEEKSLLVSDAWSPESQMWNIKLRRNLLDRELQSWTAFTSDLPRPGVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLNH

Query:  GESVFNNLWQASIPKRCKFFIWTLFHKKLNTGDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASSLRYKFNLAAGLQAPCPLSIDHLCAEAFAY
          S++  LW+   PK+CKFFIWTL H  +NT DRLQK+L    L+PN C+MC +S E I+HLF+HC ++  L  K        +  P  +  L     + 
Subjt:  GESVFNNLWQASIPKRCKFFIWTLFHKKLNTGDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASSLRYKFNLAAGLQAPCPLSIDHLCAEAFAY

Query:  KAKSQRDILCRNFFVAYTWSIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAFL
          K+Q+ ++  N      W IW ERN R+F+        +W+D ++   LWS  SK+FS YD  SIA+N  AF+
Subjt:  KAKSQRDILCRNFFVAYTWSIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAFL

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein3.4e-4636.5Show/hide
Query:  WTSNISIN---NRLFHLSEEKSLLVSDAWSPESQMWNIKLRRNLLDRELQSWTAFTSDLPRPGVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLNH
        W  N  ++    RLF LS  K   V D W+P  + WNI + R L D E   W    + LP P   +G     W  +   IF T S +  L    A   N 
Subjt:  WTSNISIN---NRLFHLSEEKSLLVSDAWSPESQMWNIKLRRNLLDRELQSWTAFTSDLPRPGVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLNH

Query:  GESVFNNLWQASIPKRCKFFIWTLFHKKLNTGDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASSLRYKFNLAAGLQAPCPLSIDHLCAEAFAY
          S++  LW+   PK+CKFFIWTL H  +NT DRLQK+L    L+PN C+MC +S E I+HLF+HC ++  L  K        +  P  +  L     + 
Subjt:  GESVFNNLWQASIPKRCKFFIWTLFHKKLNTGDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASSLRYKFNLAAGLQAPCPLSIDHLCAEAFAY

Query:  KAKSQRDILCRNFFVAYTWSIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAFL
          K+Q+ ++  N      W IW ERN R+F+        +W+D ++   LWS  SK+FS YD  SIA+N  AF+
Subjt:  KAKSQRDILCRNFFVAYTWSIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAFL

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein1.2e-4334.31Show/hide
Query:  WTSNISINN---RLFHLSEEKSLLVSDAWSPESQMWNIKLRRNLLDRELQSWTAFTSDLPRPGVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLN-
        W  N  +++   RL+ LS  K   + D W+     W++  RR L + EL  W    + +       GKD   W  +  G++T  S +  L+     +L+ 
Subjt:  WTSNISINN---RLFHLSEEKSLLVSDAWSPESQMWNIKLRRNLLDRELQSWTAFTSDLPRPGVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLN-

Query:  HGESVFNNLWQASIPKRCKFFIWTLFHKKLNTGDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASSLRYKFNLAAGLQAPCPLSIDHLCAEAFA
          ++ F NLW+ SIPK+C FFIWTL +  +NT ++L K+L      P+ C MC+R+ E   HLF+ C  A S+    +        C LS   LC    +
Subjt:  HGESVFNNLWQASIPKRCKFFIWTLFHKKLNTGDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASSLRYKFNLAAGLQAPCPLSIDHLCAEAFA

Query:  YKAKSQRDILCRNFFVAYTWSIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF
        +K K++++++  N + +  W+IW ERNAR+F G   ++ +IW+D  +LA LW+S S +FS Y A+SIA+N +AF
Subjt:  YKAKSQRDILCRNFFVAYTWSIWKERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGACTTCAAACATCTCCATCAACAATCGGCTTTTTCATCTATCTGAGGAGAAAAGTTTATTGGTGTCTGATGCTTGGTCCCCTGAATCTCAAATGTGGAACATTAA
GCTTAGAAGAAATCTTCTTGACAGAGAGTTGCAATCTTGGACTGCTTTCACCTCTGATTTGCCTAGGCCTGGTGTTTCCAAAGGCAAAGATTTTCTCAAATGGATCCCTT
CAAAAGAGGGCATATTTACAACCAAGTCTGCTCGGAATATTTTACGAGGTCACAGAGCCCCCGTCCTCAATCATGGGGAATCAGTTTTTAATAATCTCTGGCAAGCCAGT
ATTCCTAAGAGGTGTAAATTCTTTATATGGACCTTGTTCCACAAAAAACTCAACACTGGTGACAGGCTGCAGAAGAAGCTTAGTGGAACTGCACTAAACCCGAATATATG
TTTTATGTGTAGAAGAAGCACTGAATCTATAGACCATCTCTTCGTTCATTGCAGTTGGGCTTCCTCCCTTCGGTATAAATTTAATTTAGCGGCTGGTCTTCAAGCTCCAT
GCCCTCTCTCGATTGACCATCTCTGTGCCGAAGCCTTCGCGTATAAAGCTAAATCCCAAAGAGATATCCTTTGTCGAAATTTCTTTGTTGCTTATACTTGGTCTATTTGG
AAGGAGAGGAACGCTAGAGTCTTTCAGGGAACCTCTTGCTCTATCTATCAGATCTGGGATGACTCCATCTCTCTTGCTGCGCTTTGGTCCTCTAACTCCAAGGTCTTTTC
TTGCTATGATGCTGCGTCCATTGCTATTAATTGGGATGCCTTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGACTTCAAACATCTCCATCAACAATCGGCTTTTTCATCTATCTGAGGAGAAAAGTTTATTGGTGTCTGATGCTTGGTCCCCTGAATCTCAAATGTGGAACATTAA
GCTTAGAAGAAATCTTCTTGACAGAGAGTTGCAATCTTGGACTGCTTTCACCTCTGATTTGCCTAGGCCTGGTGTTTCCAAAGGCAAAGATTTTCTCAAATGGATCCCTT
CAAAAGAGGGCATATTTACAACCAAGTCTGCTCGGAATATTTTACGAGGTCACAGAGCCCCCGTCCTCAATCATGGGGAATCAGTTTTTAATAATCTCTGGCAAGCCAGT
ATTCCTAAGAGGTGTAAATTCTTTATATGGACCTTGTTCCACAAAAAACTCAACACTGGTGACAGGCTGCAGAAGAAGCTTAGTGGAACTGCACTAAACCCGAATATATG
TTTTATGTGTAGAAGAAGCACTGAATCTATAGACCATCTCTTCGTTCATTGCAGTTGGGCTTCCTCCCTTCGGTATAAATTTAATTTAGCGGCTGGTCTTCAAGCTCCAT
GCCCTCTCTCGATTGACCATCTCTGTGCCGAAGCCTTCGCGTATAAAGCTAAATCCCAAAGAGATATCCTTTGTCGAAATTTCTTTGTTGCTTATACTTGGTCTATTTGG
AAGGAGAGGAACGCTAGAGTCTTTCAGGGAACCTCTTGCTCTATCTATCAGATCTGGGATGACTCCATCTCTCTTGCTGCGCTTTGGTCCTCTAACTCCAAGGTCTTTTC
TTGCTATGATGCTGCGTCCATTGCTATTAATTGGGATGCCTTTTTGTAA
Protein sequenceShow/hide protein sequence
MWTSNISINNRLFHLSEEKSLLVSDAWSPESQMWNIKLRRNLLDRELQSWTAFTSDLPRPGVSKGKDFLKWIPSKEGIFTTKSARNILRGHRAPVLNHGESVFNNLWQAS
IPKRCKFFIWTLFHKKLNTGDRLQKKLSGTALNPNICFMCRRSTESIDHLFVHCSWASSLRYKFNLAAGLQAPCPLSIDHLCAEAFAYKAKSQRDILCRNFFVAYTWSIW
KERNARVFQGTSCSIYQIWDDSISLAALWSSNSKVFSCYDAASIAINWDAFL