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Lcy08g014360 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy08g014360
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptiontranscription termination factor MTERF4, chloroplastic
Genome locationChr08:44545775..44546074
RNA-Seq ExpressionLcy08g014360
SyntenyLcy08g014360
Gene Ontology termsGO:0006353 - DNA-templated transcription, termination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0008380 - RNA splicing (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0042794 - plastid rRNA transcription (biological process)
GO:0009536 - plastid (cellular component)
GO:0003690 - double-stranded DNA binding (molecular function)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586221.1 Transcription termination factor MTERF4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]9.3e-4189.8Show/hide
Query:  MIRGHAGVVKPNFSIMLLEMPTLKCHRFKFTTTSTFQTHPNHEKRRGLITKLQYSHGDRRTISKSLHSTITSKPYSSQMGRKEGSASSLYSSPSLVEM
        MIRGH GV+KPNFSIMLLEMPTLKCH+FKF TTSTFQT PNHEKRRGLITKLQYS GDRRT+SKSLHSTITSKPYSS++GRKEGSASSLYS PSLVEM
Subjt:  MIRGHAGVVKPNFSIMLLEMPTLKCHRFKFTTTSTFQTHPNHEKRRGLITKLQYSHGDRRTISKSLHSTITSKPYSSQMGRKEGSASSLYSSPSLVEM

KAG7021053.1 Transcription termination factor MTERF4, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]9.3e-4189.8Show/hide
Query:  MIRGHAGVVKPNFSIMLLEMPTLKCHRFKFTTTSTFQTHPNHEKRRGLITKLQYSHGDRRTISKSLHSTITSKPYSSQMGRKEGSASSLYSSPSLVEM
        MIRGH GV+KPNFSIMLLEMPTLKCH+FKF TTSTFQT PNHEKRRGLITKLQYS GDRRT+SKSLHSTITSKPYSS++GRKEGSASSLYS PSLVEM
Subjt:  MIRGHAGVVKPNFSIMLLEMPTLKCHRFKFTTTSTFQTHPNHEKRRGLITKLQYSHGDRRTISKSLHSTITSKPYSSQMGRKEGSASSLYSSPSLVEM

XP_022938209.1 transcription termination factor MTERF4, chloroplastic [Cucurbita moschata]2.7e-4089.8Show/hide
Query:  MIRGHAGVVKPNFSIMLLEMPTLKCHRFKFTTTSTFQTHPNHEKRRGLITKLQYSHGDRRTISKSLHSTITSKPYSSQMGRKEGSASSLYSSPSLVEM
        MIRGH GVVKPNFSIMLLEMPTLKCH+FKF TTSTFQT PNHEKRRGLITKLQYS GD RT+SKSLHSTITSKPYSS++GRKEGSASSLYS PSLVEM
Subjt:  MIRGHAGVVKPNFSIMLLEMPTLKCHRFKFTTTSTFQTHPNHEKRRGLITKLQYSHGDRRTISKSLHSTITSKPYSSQMGRKEGSASSLYSSPSLVEM

XP_022965673.1 transcription termination factor MTERF4, chloroplastic [Cucurbita maxima]5.6e-3885.71Show/hide
Query:  MIRGHAGVVKPNFSIMLLEMPTLKCHRFKFTTTSTFQTHPNHEKRRGLITKLQYSHGDRRTISKSLHSTITSKPYSSQMGRKEGSASSLYSSPSLVEM
        MIRGH GVVKPNFSIMLLEMPTLKCH+FKF TTSTFQ  PNHEKR  LITKLQYS GDR+T+SKSLHSTITSKPYSS++ RKEGSASSLYS PSLVEM
Subjt:  MIRGHAGVVKPNFSIMLLEMPTLKCHRFKFTTTSTFQTHPNHEKRRGLITKLQYSHGDRRTISKSLHSTITSKPYSSQMGRKEGSASSLYSSPSLVEM

XP_023538106.1 transcription termination factor MTERF4, chloroplastic [Cucurbita pepo subsp. pepo]1.3e-3988.78Show/hide
Query:  MIRGHAGVVKPNFSIMLLEMPTLKCHRFKFTTTSTFQTHPNHEKRRGLITKLQYSHGDRRTISKSLHSTITSKPYSSQMGRKEGSASSLYSSPSLVEM
        MIRGH GVVKPNFSIMLLEMPTLKC +FKF TTSTFQT PNHEKRRGLITKLQYS GDRRT+SKSLHSTITSKPYSS++ RKEGSASSLYS PSLVEM
Subjt:  MIRGHAGVVKPNFSIMLLEMPTLKCHRFKFTTTSTFQTHPNHEKRRGLITKLQYSHGDRRTISKSLHSTITSKPYSSQMGRKEGSASSLYSSPSLVEM

TrEMBL top hitse value%identityAlignment
A0A0A0KRV7 Uncharacterized protein3.8e-3276.77Show/hide
Query:  MIRGHAGVVKPNFSIMLLEMPTLKCHRFKFTTTSTFQTHPNHEKRRGLITKLQYSHGDRRTISKSLHSTITSKPYSSQMGRKEGS-ASSLYSSPSLVEM
        MIRGHAGV KPNFS+ML EM TL+CH FKFT T TFQ   NHEKR+GLIT+LQYSHGDRRT+ KSLHSTI+SK YSS++ RKEGS  SSLYS PSLVEM
Subjt:  MIRGHAGVVKPNFSIMLLEMPTLKCHRFKFTTTSTFQTHPNHEKRRGLITKLQYSHGDRRTISKSLHSTITSKPYSSQMGRKEGS-ASSLYSSPSLVEM

A0A1S3CR33 transcription termination factor MTERF4, chloroplastic2.7e-3075.76Show/hide
Query:  MIRGHAGVVKPNFSIMLLEMPTLKCHRFKFTTTSTFQTHPNHEKRRGLITKLQYSHGDRRTISKSLHSTITSKPYSSQMGRKEGSA-SSLYSSPSLVEM
        MIRGHAGVVKPN S ML EM TL+CH FKFT T TF T   HEKRR L T+LQYSHGDRRT+ KSLHSTI+SKPYSS++GRK GS+ SSLYS PSLVEM
Subjt:  MIRGHAGVVKPNFSIMLLEMPTLKCHRFKFTTTSTFQTHPNHEKRRGLITKLQYSHGDRRTISKSLHSTITSKPYSSQMGRKEGSA-SSLYSSPSLVEM

A0A6J1DUY1 transcription termination factor MTERF4, chloroplastic1.7e-3277.55Show/hide
Query:  MIRGHAGVVKPNFSIMLLEMPTLKCHRFKFTTTSTFQTHPNHEKRRGLITKLQYSHGDRRTISKSLHSTITSKPYSSQMGRKEGSASSLYSSPSLVEM
        MIR HAGVVKPNFSI++ +MPTLKC +F FTTTS FQT  N ++RRGLIT+LQYS GDRRT+SKSLHSTITSKP S+++GRKEGSASSLYS PSLVEM
Subjt:  MIRGHAGVVKPNFSIMLLEMPTLKCHRFKFTTTSTFQTHPNHEKRRGLITKLQYSHGDRRTISKSLHSTITSKPYSSQMGRKEGSASSLYSSPSLVEM

A0A6J1FDE7 transcription termination factor MTERF4, chloroplastic1.3e-4089.8Show/hide
Query:  MIRGHAGVVKPNFSIMLLEMPTLKCHRFKFTTTSTFQTHPNHEKRRGLITKLQYSHGDRRTISKSLHSTITSKPYSSQMGRKEGSASSLYSSPSLVEM
        MIRGH GVVKPNFSIMLLEMPTLKCH+FKF TTSTFQT PNHEKRRGLITKLQYS GD RT+SKSLHSTITSKPYSS++GRKEGSASSLYS PSLVEM
Subjt:  MIRGHAGVVKPNFSIMLLEMPTLKCHRFKFTTTSTFQTHPNHEKRRGLITKLQYSHGDRRTISKSLHSTITSKPYSSQMGRKEGSASSLYSSPSLVEM

A0A6J1HPD6 transcription termination factor MTERF4, chloroplastic2.7e-3885.71Show/hide
Query:  MIRGHAGVVKPNFSIMLLEMPTLKCHRFKFTTTSTFQTHPNHEKRRGLITKLQYSHGDRRTISKSLHSTITSKPYSSQMGRKEGSASSLYSSPSLVEM
        MIRGH GVVKPNFSIMLLEMPTLKCH+FKF TTSTFQ  PNHEKR  LITKLQYS GDR+T+SKSLHSTITSKPYSS++ RKEGSASSLYS PSLVEM
Subjt:  MIRGHAGVVKPNFSIMLLEMPTLKCHRFKFTTTSTFQTHPNHEKRRGLITKLQYSHGDRRTISKSLHSTITSKPYSSQMGRKEGSASSLYSSPSLVEM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTAGAGGCCATGCTGGTGTGGTAAAACCTAATTTTTCCATCATGTTACTCGAGATGCCTACTCTTAAATGTCACAGGTTCAAATTTACTACCACATCAACT
TTTCAAACGCATCCTAACCATGAGAAAAGGAGGGGTTTGATTACAAAGCTACAATACTCTCATGGTGATAGGAGAACAATATCCAAATCTCTGCATTCAACTATT
ACATCAAAGCCTTACAGTTCTCAGATGGGTAGAAAAGAAGGGAGTGCTTCATCGTTGTATAGTAGCCCTAGCTTAGTGGAGATGATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTAGAGGCCATGCTGGTGTGGTAAAACCTAATTTTTCCATCATGTTACTCGAGATGCCTACTCTTAAATGTCACAGGTTCAAATTTACTACCACATCAACT
TTTCAAACGCATCCTAACCATGAGAAAAGGAGGGGTTTGATTACAAAGCTACAATACTCTCATGGTGATAGGAGAACAATATCCAAATCTCTGCATTCAACTATT
ACATCAAAGCCTTACAGTTCTCAGATGGGTAGAAAAGAAGGGAGTGCTTCATCGTTGTATAGTAGCCCTAGCTTAGTGGAGATGATGTGA
Protein sequenceShow/hide protein sequence
MIRGHAGVVKPNFSIMLLEMPTLKCHRFKFTTTSTFQTHPNHEKRRGLITKLQYSHGDRRTISKSLHSTITSKPYSSQMGRKEGSASSLYSSPSLVEMM