; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy08g016530 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy08g016530
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionVQ domain-containing protein
Genome locationChr08:47182876..47183482
RNA-Seq ExpressionLcy08g016530
SyntenyLcy08g016530
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063579.1 VQ motif-containing protein [Cucumis melo var. makuwa]5.6e-3363.45Show/hide
Query:  MEN-FRSLPNHLHHQKI----QAPSKATMELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPD-DA-FDQSPQEFNQVSYLPPSSTA---ASFDPN
        MEN   +LP   HH+K+      P+    + KPIKVKYIS+PMMVKANNESEFRAIVQKLTGQHSPD DA FDQS Q+FN   Y PP S++    SFDP 
Subjt:  MEN-FRSLPNHLHHQKI----QAPSKATMELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPD-DA-FDQSPQEFNQVSYLPPSSTA---ASFDPN

Query:  GCYGSVSGDVY--DPIGVG-EGRNWRGEMEGSFSGFQA-SYVDVW
         CYGS SGDV   D I  G EGR WRGEMEGSFSGFQA S V++W
Subjt:  GCYGSVSGDVY--DPIGVG-EGRNWRGEMEGSFSGFQA-SYVDVW

KAE8651551.1 hypothetical protein Csa_019210 [Cucumis sativus]8.6e-3467.38Show/hide
Query:  MENFRSLPNHLHHQKI-QAPSKATM--ELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPP--SSTAASFDPNGCYG-
        MENF +LP++ HH+K+ Q  +KAT+  + KPIKVKYIS+PMMVKANNESEFRAIVQKLTGQHSPD   DQS Q+FN V Y PP  SS   SFDP  CYG 
Subjt:  MENFRSLPNHLHHQKI-QAPSKATM--ELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPP--SSTAASFDPNGCYG-

Query:  SVSGDV-YDPIGVG-EGRNWRGEME-GSFSGFQA-SYVDVW
        S SGDV +D I  G EGR WRGEME GSFSGFQA S V++W
Subjt:  SVSGDV-YDPIGVG-EGRNWRGEME-GSFSGFQA-SYVDVW

KAG6586326.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.2e-3867.67Show/hide
Query:  MENFRSLPNHLHHQKIQAPS-KATMELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGD
        MEN +SLPNHL H+K++A + +ATM  KPIKVKYIS+PMMVKA+NE EFRAIVQKLTGQHS DDAFD+SPQEFN  ++ PPSST  SFD   CY  VS D
Subjt:  MENFRSLPNHLHHQKIQAPS-KATMELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGD

Query:  VYDPIGVGEGRNWRGEMEGSFSGFQASYVDVWR
         YDPI V       GEM+ S  GFQASYVDVWR
Subjt:  VYDPIGVGEGRNWRGEMEGSFSGFQASYVDVWR

XP_022938305.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]3.6e-4069.17Show/hide
Query:  MENFRSLPNHLHHQKIQAPS-KATMELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGD
        MEN +SLPNHL H+K++A + +ATM  KPIKVKYIS+PMMVKANNE EFRAIVQKLTGQHS DDAFD+SPQEFN  ++ PPSST  SFD   CY  VS D
Subjt:  MENFRSLPNHLHHQKIQAPS-KATMELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGD

Query:  VYDPIGVGEGRNWRGEMEGSFSGFQASYVDVWR
         YDPIGV       GEM+ S  GFQASYVDVWR
Subjt:  VYDPIGVGEGRNWRGEMEGSFSGFQASYVDVWR

XP_038877668.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]8.9e-3172.9Show/hide
Query:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAA-SFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSGFQA
        KPIKVKYIS+PMMVKANNESEFRAIVQKLTGQHSP DAFDQS ++FNQV Y PPSS AA SFDP  CY S SGDV          +W+GEMEGSFSGFQA
Subjt:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAA-SFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSGFQA

Query:  -SYVDVW
         S V+ W
Subjt:  -SYVDVW

TrEMBL top hitse value%identityAlignment
A0A0A0LFF9 VQ domain-containing protein4.2e-3467.38Show/hide
Query:  MENFRSLPNHLHHQKI-QAPSKATM--ELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPP--SSTAASFDPNGCYG-
        MENF +LP++ HH+K+ Q  +KAT+  + KPIKVKYIS+PMMVKANNESEFRAIVQKLTGQHSPD   DQS Q+FN V Y PP  SS   SFDP  CYG 
Subjt:  MENFRSLPNHLHHQKI-QAPSKATM--ELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPP--SSTAASFDPNGCYG-

Query:  SVSGDV-YDPIGVG-EGRNWRGEME-GSFSGFQA-SYVDVW
        S SGDV +D I  G EGR WRGEME GSFSGFQA S V++W
Subjt:  SVSGDV-YDPIGVG-EGRNWRGEME-GSFSGFQA-SYVDVW

A0A1Q3BFQ5 VQ domain-containing protein2.3e-0838.28Show/hide
Query:  NHLHHQKIQAPSKATMELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAF------DQSPQEFNQVSY--LPPSSTAASFDPNGCYGSVSGDV
        N  HH           +  PIKV +IS+PM+VKA+N SEFRAIVQ+LTGQ+S  + F        + +E NQVSY   PP +   + + +    S+S   
Subjt:  NHLHHQKIQAPSKATMELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAF------DQSPQEFNQVSY--LPPSSTAASFDPNGCYGSVSGDV

Query:  YDPIGVGEGRNWRGEMEGSFSGFQASYV
          P+   +G  W G+   SF G Q+SY+
Subjt:  YDPIGVGEGRNWRGEMEGSFSGFQASYV

A0A5A7VDH6 VQ motif-containing protein2.7e-3363.45Show/hide
Query:  MEN-FRSLPNHLHHQKI----QAPSKATMELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPD-DA-FDQSPQEFNQVSYLPPSSTA---ASFDPN
        MEN   +LP   HH+K+      P+    + KPIKVKYIS+PMMVKANNESEFRAIVQKLTGQHSPD DA FDQS Q+FN   Y PP S++    SFDP 
Subjt:  MEN-FRSLPNHLHHQKI----QAPSKATMELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPD-DA-FDQSPQEFNQVSYLPPSSTA---ASFDPN

Query:  GCYGSVSGDVY--DPIGVG-EGRNWRGEMEGSFSGFQA-SYVDVW
         CYGS SGDV   D I  G EGR WRGEMEGSFSGFQA S V++W
Subjt:  GCYGSVSGDVY--DPIGVG-EGRNWRGEMEGSFSGFQA-SYVDVW

A0A6J1CME4 sigma factor binding protein 1, chloroplastic-like1.6e-2261.47Show/hide
Query:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQ----SPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSG
        KPIKVKYISNPMMVKAN+ESEFR IVQ+LTGQ+SPDDAF+       +E N   Y PP STA S DP G YG VSG V +   +GEG   + EM+G FSG
Subjt:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQ----SPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSG

Query:  FQASYVDVW
        FQAS V+ +
Subjt:  FQASYVDVW

A0A6J1FJE0 sigma factor binding protein 1, chloroplastic-like1.7e-4069.17Show/hide
Query:  MENFRSLPNHLHHQKIQAPS-KATMELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGD
        MEN +SLPNHL H+K++A + +ATM  KPIKVKYIS+PMMVKANNE EFRAIVQKLTGQHS DDAFD+SPQEFN  ++ PPSST  SFD   CY  VS D
Subjt:  MENFRSLPNHLHHQKIQAPS-KATMELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGD

Query:  VYDPIGVGEGRNWRGEMEGSFSGFQASYVDVWR
         YDPIGV       GEM+ S  GFQASYVDVWR
Subjt:  VYDPIGVGEGRNWRGEMEGSFSGFQASYVDVWR

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic2.1e-0638.68Show/hide
Query:  KATMELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSF
        K+T   KPIKV+YISNPM V+    S+FR +VQ+LTGQ + D     SP  F  V    P  +  + +P    G V G+ Y P+   E      +M    
Subjt:  KATMELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSF

Query:  SGFQAS
        SGF +S
Subjt:  SGFQAS

Q9LDH1 Sigma factor binding protein 1, chloroplastic1.1e-0432.5Show/hide
Query:  PNHLHHQKIQAPSKATMELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHS----PDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDP
        P+ +  +  +   K T   KPIKV+YISNPM V+    S+FR +VQ+LTGQ +    P+  +  S  + N     P  + A        +G    D Y+P
Subjt:  PNHLHHQKIQAPSKATMELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHS----PDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDP

Query:  IGVGEGRNWRGEMEGSFSGF
        +   E      +M   FSGF
Subjt:  IGVGEGRNWRGEMEGSFSGF

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein1.5e-0738.68Show/hide
Query:  KATMELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSF
        K+T   KPIKV+YISNPM V+    S+FR +VQ+LTGQ + D     SP  F  V    P  +  + +P    G V G+ Y P+   E      +M    
Subjt:  KATMELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSF

Query:  SGFQAS
        SGF +S
Subjt:  SGFQAS

AT3G56710.1 sigma factor binding protein 18.1e-0632.5Show/hide
Query:  PNHLHHQKIQAPSKATMELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHS----PDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDP
        P+ +  +  +   K T   KPIKV+YISNPM V+    S+FR +VQ+LTGQ +    P+  +  S  + N     P  + A        +G    D Y+P
Subjt:  PNHLHHQKIQAPSKATMELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHS----PDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDP

Query:  IGVGEGRNWRGEMEGSFSGF
        +   E      +M   FSGF
Subjt:  IGVGEGRNWRGEMEGSFSGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATTTTAGAAGCCTTCCTAATCATCTTCATCACCAAAAAATCCAAGCTCCCAGCAAAGCAACAATGGAGCTCAAGCCCATCAAAGTCAAGTACATTTCCAATCC
CATGATGGTCAAGGCCAACAACGAGTCTGAATTTCGAGCCATAGTTCAGAAGCTCACCGGCCAGCACTCGCCCGATGATGCTTTTGATCAATCACCTCAAGAGTTTAACC
AAGTTTCTTATCTGCCCCCGTCGTCTACGGCGGCTTCTTTTGACCCTAATGGTTGTTACGGTTCGGTCTCCGGTGATGTCTACGATCCGATCGGGGTCGGCGAAGGCCGC
AACTGGCGAGGTGAAATGGAAGGCTCTTTTTCTGGGTTTCAAGCTTCTTATGTTGATGTGTGGCGATGA
mRNA sequenceShow/hide mRNA sequence
CTCTCTCTAATGGAGAATTTTAGAAGCCTTCCTAATCATCTTCATCACCAAAAAATCCAAGCTCCCAGCAAAGCAACAATGGAGCTCAAGCCCATCAAAGTCAAGTACAT
TTCCAATCCCATGATGGTCAAGGCCAACAACGAGTCTGAATTTCGAGCCATAGTTCAGAAGCTCACCGGCCAGCACTCGCCCGATGATGCTTTTGATCAATCACCTCAAG
AGTTTAACCAAGTTTCTTATCTGCCCCCGTCGTCTACGGCGGCTTCTTTTGACCCTAATGGTTGTTACGGTTCGGTCTCCGGTGATGTCTACGATCCGATCGGGGTCGGC
GAAGGCCGCAACTGGCGAGGTGAAATGGAAGGCTCTTTTTCTGGGTTTCAAGCTTCTTATGTTGATGTGTGGCGATGAAGGTGTGAAGGAGAAGGTTATGAGTGAGTGAA
AATACTCAAGTATAGTTTTTGTATTTAATATGTGAGAGATAGTTGATATAAATTGGATTGTGTTGTACATTCTGTTTCGTTGAATATTGAATTTGAATAAGTGGTAAATT
GTGACTTGAGCATATATAGTTTAAGAAAAAAAACTTGGCTCCATATATCGGTATGTA
Protein sequenceShow/hide protein sequence
MENFRSLPNHLHHQKIQAPSKATMELKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSPDDAFDQSPQEFNQVSYLPPSSTAASFDPNGCYGSVSGDVYDPIGVGEGR
NWRGEMEGSFSGFQASYVDVWR