; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy08g017580 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy08g017580
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
Genome locationChr08:48289260..48289556
RNA-Seq ExpressionLcy08g017580
SyntenyLcy08g017580
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061603.1 putative polygalacturonase [Cucumis melo var. makuwa]1.4e-0561.22Show/hide
Query:  MGAFAVPVVIFGLVSAISLMKGFSEETIFNVMNYGAMGGSTIDNSQVNS
        MGAF  P+  FGLV AI  +KGF EE IFNV++YGA+GGS  D+SQ  S
Subjt:  MGAFAVPVVIFGLVSAISLMKGFSEETIFNVMNYGAMGGSTIDNSQVNS
XP_016902034.1 PREDICTED: probable polygalacturonase At1g80170 isoform X1 [Cucumis melo]4.8e-0663.27Show/hide
Query:  MGAFAVPVVIFGLVSAISLMKGFSEETIFNVMNYGAMGGSTIDNSQVNS
        MGAF  P+  FGLV AI  +KGF EE IFNVM+YGA+GGS  D+SQ  S
Subjt:  MGAFAVPVVIFGLVSAISLMKGFSEETIFNVMNYGAMGGSTIDNSQVNS
XP_016902035.1 PREDICTED: probable polygalacturonase At1g80170 isoform X2 [Cucumis melo]4.8e-0663.27Show/hide
Query:  MGAFAVPVVIFGLVSAISLMKGFSEETIFNVMNYGAMGGSTIDNSQVNS
        MGAF  P+  FGLV AI  +KGF EE IFNVM+YGA+GGS  D+SQ  S
Subjt:  MGAFAVPVVIFGLVSAISLMKGFSEETIFNVMNYGAMGGSTIDNSQVNS
XP_022143115.1 probable polygalacturonase At1g80170 [Momordica charantia]1.4e-0564.44Show/hide
Query:  MGAFAVPVVIFGLVSAISLMKGFSEETIFNVMNYGAMGGSTIDNS
        MGAFAVP VIFGLV A++   GFS+E +FNVM+YGA+ G+T D+S
Subjt:  MGAFAVPVVIFGLVSAISLMKGFSEETIFNVMNYGAMGGSTIDNS
TrEMBL top hitse value%identityAlignment
A0A1S4E1D2 probable polygalacturonase At1g80170 isoform X12.3e-0663.27Show/hide
Query:  MGAFAVPVVIFGLVSAISLMKGFSEETIFNVMNYGAMGGSTIDNSQVNS
        MGAF  P+  FGLV AI  +KGF EE IFNVM+YGA+GGS  D+SQ  S
Subjt:  MGAFAVPVVIFGLVSAISLMKGFSEETIFNVMNYGAMGGSTIDNSQVNS
A0A1S4E233 probable polygalacturonase At1g80170 isoform X22.3e-0663.27Show/hide
Query:  MGAFAVPVVIFGLVSAISLMKGFSEETIFNVMNYGAMGGSTIDNSQVNS
        MGAF  P+  FGLV AI  +KGF EE IFNVM+YGA+GGS  D+SQ  S
Subjt:  MGAFAVPVVIFGLVSAISLMKGFSEETIFNVMNYGAMGGSTIDNSQVNS
A0A5A7V0D8 Putative polygalacturonase6.8e-0661.22Show/hide
Query:  MGAFAVPVVIFGLVSAISLMKGFSEETIFNVMNYGAMGGSTIDNSQVNS
        MGAF  P+  FGLV AI  +KGF EE IFNV++YGA+GGS  D+SQ  S
Subjt:  MGAFAVPVVIFGLVSAISLMKGFSEETIFNVMNYGAMGGSTIDNSQVNS
A0A6J1CMV4 probable polygalacturonase At1g801706.8e-0664.44Show/hide
Query:  MGAFAVPVVIFGLVSAISLMKGFSEETIFNVMNYGAMGGSTIDNS
        MGAFAVP VIFGLV A++   GFS+E +FNVM+YGA+ G+T D+S
Subjt:  MGAFAVPVVIFGLVSAISLMKGFSEETIFNVMNYGAMGGSTIDNS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGCCTTCGCCGTTCCTGTGGTCATTTTCGGGTTAGTTTCCGCTATATCGCTCATGAAAGGGTTTTCAGAAGAGACCATCTTTAATGTCATGAATTATGGA
GCCATGGGAGGCAGCACCATAGATAATTCACAAGTAAACTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGCCTTCGCCGTTCCTGTGGTCATTTTCGGGTTAGTTTCCGCTATATCGCTCATGAAAGGGTTTTCAGAAGAGACCATCTTTAATGTCATGAATTATGGA
GCCATGGGAGGCAGCACCATAGATAATTCACAAGTAAACTCTTAG
Protein sequenceShow/hide protein sequence
MGAFAVPVVIFGLVSAISLMKGFSEETIFNVMNYGAMGGSTIDNSQVNS