; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy09g008100 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy09g008100
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionPolynucleotidyl transferase, ribonuclease H-like superfamily protein
Genome locationChr09:7502052..7503337
RNA-Seq ExpressionLcy09g008100
SyntenyLcy09g008100
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015382216.1 uncharacterized protein LOC107175320 [Citrus sinensis]1.6e-0629.1Show/hide
Query:  DASWNKRMKTGGIRWILHRGDGTPVTAGARPVLRQWKVSWLEAQAVIEGLKSIPESS-PRLIIELDFLQVVHLLEGKEEDVTELSFFVEEARCLIERLDV
        DA  N   +  G+  ++    G  V A  +    +  V+ +EA+AV+ GL+S  +++   +IIE D  +VV L   K+   TE+ + + E +  +E  +V
Subjt:  DASWNKRMKTGGIRWILHRGDGTPVTAGARPVLRQWKVSWLEAQAVIEGLKSIPESS-PRLIIELDFLQVVHLLEGKEEDVTELSFFVEEARCLIERLDV

Query:  GEVWHIPRNLNKLAHHLAHTACLTKSSITWFNEF
          + ++PRN N +AH +A  A   +S + W   F
Subjt:  GEVWHIPRNLNKLAHHLAHTACLTKSSITWFNEF

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]6.6e-1334.92Show/hide
Query:  WILSSDASWNKRMKTGGIRWILHRGDGTPVTAGARPVLRQWKVSWLEAQAVIEGLKSIPESSPRLI-IELDFLQVVHLLEGKEEDVTELSFFVEEARCLI
        W L+++A+W     TGGI WIL    G  + A  R +  +  +++LE  A+ EGL++I +   R I +E D L+ +HLL  + +D TE+ + +EE   ++
Subjt:  WILSSDASWNKRMKTGGIRWILHRGDGTPVTAGARPVLRQWKVSWLEAQAVIEGLKSIPESSPRLI-IELDFLQVVHLLEGKEEDVTELSFFVEEARCLI

Query:  ERLDVGEVWHIPRNLNKLAHHLAHTA
        + +++  + HI R  NK+AH LA  A
Subjt:  ERLDVGEVWHIPRNLNKLAHHLAHTA

XP_022148737.1 uncharacterized protein LOC111017329 [Momordica charantia]1.2e-0929.37Show/hide
Query:  WILSSDASWNKRMKTGGIRWILHRGDGTPVTAGARPVLRQWKVSWLEAQAVIEGLKS-IPESSPRLIIELDFLQVVHLLEGKEEDVTELSFFVEEARCLI
        W L++DA+W+     GG+ WI+         AG + +     +++LE  A+  G+++ +  SS  LIIE + L+ +HL++G +++VTE+ + V++ +   
Subjt:  WILSSDASWNKRMKTGGIRWILHRGDGTPVTAGARPVLRQWKVSWLEAQAVIEGLKS-IPESSPRLIIELDFLQVVHLLEGKEEDVTELSFFVEEARCLI

Query:  ERLDVGEVWHIPRNLNKLAHHLAHTA
        ER  +    H+ R+ N +A  +A+ A
Subjt:  ERLDVGEVWHIPRNLNKLAHHLAHTA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.0e-1336.11Show/hide
Query:  VWILSSDASWNKRMKTGGIRWILHRGDGTPVTAGARPVLRQWKVSWLEAQAVIEGLKSIPESS--PRLIIELDFLQVVHLLEGKEEDVTELSFFVEEARC
        +W L++DASW+     GGI WI+   DG  V AG R V     V  LEA A++EGL+++        L IE D  +V  LL  K ED+T+  + VEE   
Subjt:  VWILSSDASWNKRMKTGGIRWILHRGDGTPVTAGARPVLRQWKVSWLEAQAVIEGLKSIPESS--PRLIIELDFLQVVHLLEGKEEDVTELSFFVEEARC

Query:  LIERLDVGEVWHIPRNLNKLAHHLAHTACLTKSSITWFNEFSSW
        L +  ++     + R  N  AH LA  A + + S+ W + F +W
Subjt:  LIERLDVGEVWHIPRNLNKLAHHLAHTACLTKSSITWFNEFSSW

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.1e-1234.33Show/hide
Query:  WILSSDASWNKRMKTGGIRWILHRGDGTPVTAGARPVLRQWKVSWLEAQAVIEGLKSIPESSPRLI---------IELDFLQVVHLLEGKEEDVTELSFF
        W L++DA+W     TGGI WIL    G  + A  R +  +  +++LE  A+ EGL++I +   R I         +E D L+ +HLL  + +D TE+ + 
Subjt:  WILSSDASWNKRMKTGGIRWILHRGDGTPVTAGARPVLRQWKVSWLEAQAVIEGLKSIPESSPRLI---------IELDFLQVVHLLEGKEEDVTELSFF

Query:  VEEARCLIERLDVGEVWHIPRNLNKLAHHLAHTA
        +EE   ++E + +  + HI R  NK+AH LA  A
Subjt:  VEEARCLIERLDVGEVWHIPRNLNKLAHHLAHTA

TrEMBL top hitse value%identityAlignment
A0A1S8ADA4 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Fragment)3.8e-0627.61Show/hide
Query:  DASWNKRMKTGGIRWILHRGDGTPVTAGARPVLRQWKVSWLEAQAVIEGLKSIPESSP-RLIIELDFLQVVHLLEGKEEDVTELSFFVEEARCLIERLDV
        DA+ N   +  G+  ++    G  V A  +    +  V+ +EA+AV+ G++S  +++   +IIE D  +VV L   K+   TE+ + + E +  +E  +V
Subjt:  DASWNKRMKTGGIRWILHRGDGTPVTAGARPVLRQWKVSWLEAQAVIEGLKSIPESSP-RLIIELDFLQVVHLLEGKEEDVTELSFFVEEARCLIERLDV

Query:  GEVWHIPRNLNKLAHHLAHTACLTKSSITWFNEF
          + ++PR+ N +AH +A  A   +S + W   F
Subjt:  GEVWHIPRNLNKLAHHLAHTACLTKSSITWFNEF

A0A6J1CP26 uncharacterized protein LOC1110134123.2e-1334.92Show/hide
Query:  WILSSDASWNKRMKTGGIRWILHRGDGTPVTAGARPVLRQWKVSWLEAQAVIEGLKSIPESSPRLI-IELDFLQVVHLLEGKEEDVTELSFFVEEARCLI
        W L+++A+W     TGGI WIL    G  + A  R +  +  +++LE  A+ EGL++I +   R I +E D L+ +HLL  + +D TE+ + +EE   ++
Subjt:  WILSSDASWNKRMKTGGIRWILHRGDGTPVTAGARPVLRQWKVSWLEAQAVIEGLKSIPESSPRLI-IELDFLQVVHLLEGKEEDVTELSFFVEEARCLI

Query:  ERLDVGEVWHIPRNLNKLAHHLAHTA
        + +++  + HI R  NK+AH LA  A
Subjt:  ERLDVGEVWHIPRNLNKLAHHLAHTA

A0A6J1D5W1 uncharacterized protein LOC1110173295.7e-1029.37Show/hide
Query:  WILSSDASWNKRMKTGGIRWILHRGDGTPVTAGARPVLRQWKVSWLEAQAVIEGLKS-IPESSPRLIIELDFLQVVHLLEGKEEDVTELSFFVEEARCLI
        W L++DA+W+     GG+ WI+         AG + +     +++LE  A+  G+++ +  SS  LIIE + L+ +HL++G +++VTE+ + V++ +   
Subjt:  WILSSDASWNKRMKTGGIRWILHRGDGTPVTAGARPVLRQWKVSWLEAQAVIEGLKS-IPESSPRLIIELDFLQVVHLLEGKEEDVTELSFFVEEARCLI

Query:  ERLDVGEVWHIPRNLNKLAHHLAHTA
        ER  +    H+ R+ N +A  +A+ A
Subjt:  ERLDVGEVWHIPRNLNKLAHHLAHTA

A0A6J1DNV9 uncharacterized protein LOC1110224035.0e-1436.11Show/hide
Query:  VWILSSDASWNKRMKTGGIRWILHRGDGTPVTAGARPVLRQWKVSWLEAQAVIEGLKSIPESS--PRLIIELDFLQVVHLLEGKEEDVTELSFFVEEARC
        +W L++DASW+     GGI WI+   DG  V AG R V     V  LEA A++EGL+++        L IE D  +V  LL  K ED+T+  + VEE   
Subjt:  VWILSSDASWNKRMKTGGIRWILHRGDGTPVTAGARPVLRQWKVSWLEAQAVIEGLKSIPESS--PRLIIELDFLQVVHLLEGKEEDVTELSFFVEEARC

Query:  LIERLDVGEVWHIPRNLNKLAHHLAHTACLTKSSITWFNEFSSW
        L +  ++     + R  N  AH LA  A + + S+ W + F +W
Subjt:  LIERLDVGEVWHIPRNLNKLAHHLAHTACLTKSSITWFNEFSSW

A0A6J1DSV1 uncharacterized protein LOC1110236085.5e-1334.33Show/hide
Query:  WILSSDASWNKRMKTGGIRWILHRGDGTPVTAGARPVLRQWKVSWLEAQAVIEGLKSIPESSPRLI---------IELDFLQVVHLLEGKEEDVTELSFF
        W L++DA+W     TGGI WIL    G  + A  R +  +  +++LE  A+ EGL++I +   R I         +E D L+ +HLL  + +D TE+ + 
Subjt:  WILSSDASWNKRMKTGGIRWILHRGDGTPVTAGARPVLRQWKVSWLEAQAVIEGLKSIPESSPRLI---------IELDFLQVVHLLEGKEEDVTELSFF

Query:  VEEARCLIERLDVGEVWHIPRNLNKLAHHLAHTA
        +EE   ++E + +  + HI R  NK+AH LA  A
Subjt:  VEEARCLIERLDVGEVWHIPRNLNKLAHHLAHTA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAAACGACCGTCTGGATCCTAAGCAGTGATGCGTCGTGGAACAAAAGAATGAAGACCGGCGGCATCAGATGGATCCTTCACCGTGGAGATGGGACCCCT
GTGACTGCCGGTGCTCGCCCTGTTCTTCGACAATGGAAGGTAAGCTGGCTGGAAGCCCAAGCAGTTATAGAAGGGCTGAAGTCGATTCCCGAATCTTCCCCCAGG
TTGATTATTGAGCTTGACTTTCTTCAGGTGGTACATCTTCTTGAGGGGAAGGAGGAGGATGTCACGGAACTCAGTTTTTTCGTTGAAGAAGCCAGATGCCTCATT
GAAAGATTGGATGTGGGTGAAGTTTGGCATATCCCTCGGAATCTCAACAAATTAGCCCATCACCTAGCCCACACAGCCTGTTTAACTAAATCGTCGATCACTTGG
TTTAATGAATTTTCTAGTTGGTTTTTGGATTTAAACGTTAAGGATATTGGAGGGTCAGACAATCTTTGTGGGGGTGCAGGGCTGCCATTTGGGAGCAATTGTTTT
TGCTTAATGATATGA
mRNA sequenceShow/hide mRNA sequence
CGCGCTTTGACTAGTGCACTGTTATTAGGGTGGCGTCAATTTTATTGTTATTAGGGTGGCGTCAATTTTTATTATGTGTGCATACATATATTTTAGCTCGAGAGA
GGTGTTGGGCTCGAGTTTGGCTGGAGTAGAAACGAAGGAAGCGAATGATGAAAGAGAGAAAAAGAAAAAACAAGAGTATTTATTTAAAAAGATTAAAATTAAAAA
TATATGAAAATTTATAAAATGGAAAACTATACTTTTCATCTATGAGGTTTGTGTTTGGTAGCAATTTAGGTTTTTGAGTTTTGAAACTCGATGTTTTAGCTTTTG
GTACTTCAATTTGGTAACATTTTGGTCACTGTCATTAAATGTCCAGGAATAATATGGCCTAGGAATAAGATAGTTGATTAACTGTGTTTGGCTGGTTATGCAAGA
GAATTTGTCATTAGGATTTGATGGGGAATCAATTATGTCTTATTTATTGAGATTAATCACAAAAATCTTATCTAATTTTATTAGATTAATCAATAAAACAATCAA
AATTAATTGAAAGTATAGTTTTTCTTCATGTCATTCTTTCTCTCCCTTATTTTTATTAATATCAATTTTTCTTTTAATACATTATGCAAGAGTATCAAATATCCT
TATCCATGGATATACAAAGTATATGAAAATAGTTCAAAACCTTGTACTATACATTATGCAAGGCTGTTTGGTTGTGACGGAAGTTGAACGGTCGATCGCGGCAAG
AAAATGGGCAAATGGCGAAAACGACCGTCTGGATCCTAAGCAGTGATGCGTCGTGGAACAAAAGAATGAAGACCGGCGGCATCAGATGGATCCTTCACCGTGGAG
ATGGGACCCCTGTGACTGCCGGTGCTCGCCCTGTTCTTCGACAATGGAAGGTAAGCTGGCTGGAAGCCCAAGCAGTTATAGAAGGGCTGAAGTCGATTCCCGAAT
CTTCCCCCAGGTTGATTATTGAGCTTGACTTTCTTCAGGTGGTACATCTTCTTGAGGGGAAGGAGGAGGATGTCACGGAACTCAGTTTTTTCGTTGAAGAAGCCA
GATGCCTCATTGAAAGATTGGATGTGGGTGAAGTTTGGCATATCCCTCGGAATCTCAACAAATTAGCCCATCACCTAGCCCACACAGCCTGTTTAACTAAATCGT
CGATCACTTGGTTTAATGAATTTTCTAGTTGGTTTTTGGATTTAAACGTTAAGGATATTGGAGGGTCAGACAATCTTTGTGGGGGTGCAGGGCTGCCATTTGGGA
GCAATTGTTTTTGCTTAATGATATGA
Protein sequenceShow/hide protein sequence
MAKTTVWILSSDASWNKRMKTGGIRWILHRGDGTPVTAGARPVLRQWKVSWLEAQAVIEGLKSIPESSPRLIIELDFLQVVHLLEGKEEDVTELSFFVEEARCLI
ERLDVGEVWHIPRNLNKLAHHLAHTACLTKSSITWFNEFSSWFLDLNVKDIGGSDNLCGGAGLPFGSNCFCLMI