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Lcy09g009100 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy09g009100
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr09:8985757..8986503
RNA-Seq ExpressionLcy09g009100
SyntenyLcy09g009100
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]3.4e-0725.54Show/hide
Query:  ERIGWAKFEEFVVLLWAVWNCRNQRKFKG--AMVSSGLANWALSYIMAFREATQ----------------------------------------------
        +RI W   EE  V LWA+WN RNQ  F      +   + +W   Y+  ++ A +                                              
Subjt:  ERIGWAKFEEFVVLLWAVWNCRNQRKFKG--AMVSSGLANWALSYIMAFREATQ----------------------------------------------

Query:  VHESVRN------------SD--MVKGLAVVNGLRLAMEMGLSPIVLETDSLRIFQLLQEGQEEDLSEVTSLSVDLPREMLISSLF---RLIFSQREGNL
        + +S  N            SD  + + LA   G+ LA+E GL P  +ETDS ++F LL+   E++ SE+  L+  +    ++SSL       F  REGN 
Subjt:  VHESVRN------------SD--MVKGLAVVNGLRLAMEMGLSPIVLETDSLRIFQLLQEGQEEDLSEVTSLSVDLPREMLISSLF---RLIFSQREGNL

Query:  VAHLLARVDVGDGQFNFWMKSIPSCVGSLVA
         AH LAR+ +    F+ W++   S +  ++A
Subjt:  VAHLLARVDVGDGQFNFWMKSIPSCVGSLVA

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]9.2e-1329.15Show/hide
Query:  MFHILKDIEERIGWAKFEEFVVLLWAVWNCRNQRKF-KGAMVSSGLANWALSYI------------------MAFREATQVH------------------
        M +IL+D  + + W  FEE VV LW++WN RN   F K  +    LA W  +YI                   +F++++Q+H                  
Subjt:  MFHILKDIEERIGWAKFEEFVVLLWAVWNCRNQRKF-KGAMVSSGLANWALSYI------------------MAFREATQVH------------------

Query:  -----------------------------------ESVRNSDMVKGLAVVNGLRLAMEMGLSPIVLETDSLRIFQLLQEGQEEDLSEVTSLSVDLPREML
                                           E V + D  + LA V GLR+AME G+SPI+LETDSLRI+ L     +E LS+  S+   +   + 
Subjt:  -----------------------------------ESVRNSDMVKGLAVVNGLRLAMEMGLSPIVLETDSLRIFQLLQEGQEEDLSEVTSLSVDLPREML

Query:  ISSLFRLIFSQREGNLVAHLLAR
                F++R GN +AHLLAR
Subjt:  ISSLFRLIFSQREGNLVAHLLAR

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]6.1e-0937.61Show/hide
Query:  ATQVHESVRNSDMVKGLAVVNGLRLAMEMGLSPIVLETDSLRIFQLLQEGQEEDLSEVTSLSVDLPREMLISSLFRLIFSQREGNLVAHLLARVDVGDGQ
        AT+  E++++ DM + +  V GL+LA ++G++P++LETDS RIF L  +   EDLSE   + +        S      F +REGN  AH+LAR  +   +
Subjt:  ATQVHESVRNSDMVKGLAVVNGLRLAMEMGLSPIVLETDSLRIFQLLQEGQEEDLSEVTSLSVDLPREMLISSLFRLIFSQREGNLVAHLLARVDVGDGQ

Query:  FNFWMKSIP
        F+ WM+  P
Subjt:  FNFWMKSIP

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]5.2e-0825.44Show/hide
Query:  FHILKDIEERIGWAKFEEFVVLLWAVWNCRNQRKFKGA-----MVSSGLANWALSYIMAFRE--------------------------------------
        F IL++  E +  A FEE  V++W +WN RN R F  +      +   L  WA  Y M FRE                                      
Subjt:  FHILKDIEERIGWAKFEEFVVLLWAVWNCRNQRKFKGA-----MVSSGLANWALSYIMAFRE--------------------------------------

Query:  -------------------ATQVHESVRNSDMVKGLAVVNGLRLAMEMGLSPIVLETDSLRIFQLLQEGQEEDLSEVTSLSVDLPREMLISSLFRLIFSQ
                           AT+  E++++ DM + +A V GL+LA E+G+ P +                 EDLSE   + +        S      F +
Subjt:  -------------------ATQVHESVRNSDMVKGLAVVNGLRLAMEMGLSPIVLETDSLRIFQLLQEGQEEDLSEVTSLSVDLPREMLISSLFRLIFSQ

Query:  REGNLVAHLLARVDVGDGQFNFWMKSIP
        REGN  AH+LAR  +   +F+ WM+  P
Subjt:  REGNLVAHLLARVDVGDGQFNFWMKSIP

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]2.1e-0927.62Show/hide
Query:  DMFHILKDIEERIGWAKFEEFVVLLWAVWNCRNQ--RKFKGAMVSSGLANWALSYIMAFREATQVHES--------------------------------
        DM H ++   + + W      VVLLWA+WN RNQ  + F      S L +W+ +Y+  ++ A +   S                                
Subjt:  DMFHILKDIEERIGWAKFEEFVVLLWAVWNCRNQ--RKFKGAMVSSGLANWALSYIMAFREATQVHES--------------------------------

Query:  ---------VRNS------------------DMVKGLAVVNGLRLAMEMGLSPIVLETDSLRIFQLLQEGQEEDLSEVTSLSVDLPREMLISSLFRLIFS
                 +R+S                  D V+G AV  G+ LA+E G     +ETDSLRIF LL     +D SEV  L   + +  L S   R+ FS
Subjt:  ---------VRNS------------------DMVKGLAVVNGLRLAMEMGLSPIVLETDSLRIFQLLQEGQEEDLSEVTSLSVDLPREMLISSLFRLIFS

Query:  --QREGNLVAHLLARVDVGDGQFNFWMKSIPSCVGSLVA
           R GN  AHLLA++ +       W++  P  + S++A
Subjt:  --QREGNLVAHLLARVDVGDGQFNFWMKSIPSCVGSLVA

TrEMBL top hitse value%identityAlignment
A0A2N9H4E7 Uncharacterized protein6.6e-0925.64Show/hide
Query:  EGSQIGDMFHILKDIEERIGWAKFEEFVVLLWAVWNCRNQRKFKGAMVSSGLANWALSYIMAFREATQVHESVRNSD------------------MVKGL
        E +Q  D    +  I +   +   EEF V  W +W  RN++ F+G   ++ + + A    +   E       +RNSD                    +  
Subjt:  EGSQIGDMFHILKDIEERIGWAKFEEFVVLLWAVWNCRNQRKFKGAMVSSGLANWALSYIMAFREATQVHESVRNSD------------------MVKGL

Query:  AVVNGLRLAMEMGLSPIVLETDSLRIFQLLQEGQEEDLSEVTSLSVDLPREMLISSLFRLIFSQREGNLVAHLLARVDVGDGQFNFWMKSIPSCV
        AV++GL+LA++ GL+ +++E DS+ I Q LQ  +E ++S + +   +    +     ++L    RE N+VAH LA+  +   Q   WM+  P+ +
Subjt:  AVVNGLRLAMEMGLSPIVLETDSLRIFQLLQEGQEEDLSEVTSLSVDLPREMLISSLFRLIFSQREGNLVAHLLARVDVGDGQFNFWMKSIPSCV

A0A6J1CDQ4 uncharacterized protein LOC1110105334.4e-1329.15Show/hide
Query:  MFHILKDIEERIGWAKFEEFVVLLWAVWNCRNQRKF-KGAMVSSGLANWALSYI------------------MAFREATQVH------------------
        M +IL+D  + + W  FEE VV LW++WN RN   F K  +    LA W  +YI                   +F++++Q+H                  
Subjt:  MFHILKDIEERIGWAKFEEFVVLLWAVWNCRNQRKF-KGAMVSSGLANWALSYI------------------MAFREATQVH------------------

Query:  -----------------------------------ESVRNSDMVKGLAVVNGLRLAMEMGLSPIVLETDSLRIFQLLQEGQEEDLSEVTSLSVDLPREML
                                           E V + D  + LA V GLR+AME G+SPI+LETDSLRI+ L     +E LS+  S+   +   + 
Subjt:  -----------------------------------ESVRNSDMVKGLAVVNGLRLAMEMGLSPIVLETDSLRIFQLLQEGQEEDLSEVTSLSVDLPREML

Query:  ISSLFRLIFSQREGNLVAHLLAR
                F++R GN +AHLLAR
Subjt:  ISSLFRLIFSQREGNLVAHLLAR

A0A6J1CIF1 uncharacterized protein LOC1110112373.0e-0937.61Show/hide
Query:  ATQVHESVRNSDMVKGLAVVNGLRLAMEMGLSPIVLETDSLRIFQLLQEGQEEDLSEVTSLSVDLPREMLISSLFRLIFSQREGNLVAHLLARVDVGDGQ
        AT+  E++++ DM + +  V GL+LA ++G++P++LETDS RIF L  +   EDLSE   + +        S      F +REGN  AH+LAR  +   +
Subjt:  ATQVHESVRNSDMVKGLAVVNGLRLAMEMGLSPIVLETDSLRIFQLLQEGQEEDLSEVTSLSVDLPREMLISSLFRLIFSQREGNLVAHLLARVDVGDGQ

Query:  FNFWMKSIP
        F+ WM+  P
Subjt:  FNFWMKSIP

A0A6J1DAR4 uncharacterized protein LOC1110189542.5e-0825.44Show/hide
Query:  FHILKDIEERIGWAKFEEFVVLLWAVWNCRNQRKFKGA-----MVSSGLANWALSYIMAFRE--------------------------------------
        F IL++  E +  A FEE  V++W +WN RN R F  +      +   L  WA  Y M FRE                                      
Subjt:  FHILKDIEERIGWAKFEEFVVLLWAVWNCRNQRKFKGA-----MVSSGLANWALSYIMAFRE--------------------------------------

Query:  -------------------ATQVHESVRNSDMVKGLAVVNGLRLAMEMGLSPIVLETDSLRIFQLLQEGQEEDLSEVTSLSVDLPREMLISSLFRLIFSQ
                           AT+  E++++ DM + +A V GL+LA E+G+ P +                 EDLSE   + +        S      F +
Subjt:  -------------------ATQVHESVRNSDMVKGLAVVNGLRLAMEMGLSPIVLETDSLRIFQLLQEGQEEDLSEVTSLSVDLPREMLISSLFRLIFSQ

Query:  REGNLVAHLLARVDVGDGQFNFWMKSIP
        REGN  AH+LAR  +   +F+ WM+  P
Subjt:  REGNLVAHLLARVDVGDGQFNFWMKSIP

A0A6J1DBJ7 uncharacterized protein LOC1110189731.0e-0927.62Show/hide
Query:  DMFHILKDIEERIGWAKFEEFVVLLWAVWNCRNQ--RKFKGAMVSSGLANWALSYIMAFREATQVHES--------------------------------
        DM H ++   + + W      VVLLWA+WN RNQ  + F      S L +W+ +Y+  ++ A +   S                                
Subjt:  DMFHILKDIEERIGWAKFEEFVVLLWAVWNCRNQ--RKFKGAMVSSGLANWALSYIMAFREATQVHES--------------------------------

Query:  ---------VRNS------------------DMVKGLAVVNGLRLAMEMGLSPIVLETDSLRIFQLLQEGQEEDLSEVTSLSVDLPREMLISSLFRLIFS
                 +R+S                  D V+G AV  G+ LA+E G     +ETDSLRIF LL     +D SEV  L   + +  L S   R+ FS
Subjt:  ---------VRNS------------------DMVKGLAVVNGLRLAMEMGLSPIVLETDSLRIFQLLQEGQEEDLSEVTSLSVDLPREMLISSLFRLIFS

Query:  --QREGNLVAHLLARVDVGDGQFNFWMKSIPSCVGSLVA
           R GN  AHLLA++ +       W++  P  + S++A
Subjt:  --QREGNLVAHLLARVDVGDGQFNFWMKSIPSCVGSLVA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGGAGTCAAATTGGGGATATGTTTCATATTCTCAAAGATATAGAGGAGAGGATTGGCTGGGCAAAGTTTGAGGAATTTGTTGTGCTCTTGTGGGCGGTTTGGAA
CTGTCGGAATCAGAGGAAATTTAAGGGAGCGATGGTTTCGTCGGGTCTTGCAAATTGGGCTTTAAGCTATATTATGGCTTTTCGGGAGGCGACTCAGGTCCATGAGAGTG
TGCGAAATTCAGACATGGTTAAGGGTCTAGCGGTGGTCAATGGATTGAGATTGGCTATGGAAATGGGCCTTTCTCCTATTGTGCTAGAGACCGACTCGTTACGAATCTTT
CAGTTGCTTCAGGAAGGGCAAGAAGAAGACTTGTCAGAGGTTACTTCATTAAGTGTTGATCTGCCCCGAGAGATGTTGATTTCTTCTCTATTTCGACTCATCTTCTCGCA
GCGTGAAGGGAACTTGGTGGCACACCTTTTAGCCCGTGTTGATGTGGGTGATGGTCAATTTAATTTTTGGATGAAGTCTATTCCATCCTGTGTTGGTTCTTTGGTTGCTG
ATGAGGCAATTCTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGGAGTCAAATTGGGGATATGTTTCATATTCTCAAAGATATAGAGGAGAGGATTGGCTGGGCAAAGTTTGAGGAATTTGTTGTGCTCTTGTGGGCGGTTTGGAA
CTGTCGGAATCAGAGGAAATTTAAGGGAGCGATGGTTTCGTCGGGTCTTGCAAATTGGGCTTTAAGCTATATTATGGCTTTTCGGGAGGCGACTCAGGTCCATGAGAGTG
TGCGAAATTCAGACATGGTTAAGGGTCTAGCGGTGGTCAATGGATTGAGATTGGCTATGGAAATGGGCCTTTCTCCTATTGTGCTAGAGACCGACTCGTTACGAATCTTT
CAGTTGCTTCAGGAAGGGCAAGAAGAAGACTTGTCAGAGGTTACTTCATTAAGTGTTGATCTGCCCCGAGAGATGTTGATTTCTTCTCTATTTCGACTCATCTTCTCGCA
GCGTGAAGGGAACTTGGTGGCACACCTTTTAGCCCGTGTTGATGTGGGTGATGGTCAATTTAATTTTTGGATGAAGTCTATTCCATCCTGTGTTGGTTCTTTGGTTGCTG
ATGAGGCAATTCTTTTGTAA
Protein sequenceShow/hide protein sequence
MEGSQIGDMFHILKDIEERIGWAKFEEFVVLLWAVWNCRNQRKFKGAMVSSGLANWALSYIMAFREATQVHESVRNSDMVKGLAVVNGLRLAMEMGLSPIVLETDSLRIF
QLLQEGQEEDLSEVTSLSVDLPREMLISSLFRLIFSQREGNLVAHLLARVDVGDGQFNFWMKSIPSCVGSLVADEAILL