CuGenDBv2

Gene ID	Lcy09g010280
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein ROOT PRIMORDIUM DEFECTIVE 1
Genome location	Chr09:10855565..10855969
RNA-Seq Expression	Lcy09g010280
Synteny	Lcy09g010280
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR021099 - Plant organelle RNA recognition domain IPR045040 - PORR family

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6578890.1 Protein WHAT'S THIS FACTOR 1-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-63

90.3

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Query:  MLKKLRYWNPRLSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHND
        +L+K R+W+PRLSSPY+LK FLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNI+LRCPNQTAPVKFLQKKFKTLD QGKALNWLKKYP CFEVYLHND
Subjt:  MLKKLRYWNPRLSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHND

Query:  EYYFRLTKRMMALVEEEEAVKDMQEPIFVERLAK
        EYYFRLTKRMMALVEEEE +KDMQEP FVERLAK
Subjt:  EYYFRLTKRMMALVEEEEAVKDMQEPIFVERLAK

KAG7016419.1 Vacuolar iron transporter-like 4, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.2e-63

89.55

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Query:  MLKKLRYWNPRLSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHND
        + +K R+W+PRLSSPY+LK FLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNI+LRCPNQTAPVKFLQKKFKTLD QGKALNWLKKYP CFEVYLHND
Subjt:  MLKKLRYWNPRLSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHND

Query:  EYYFRLTKRMMALVEEEEAVKDMQEPIFVERLAK
        EYYFRLTKRMMALVEEEE +KDMQEP FVERLAK
Subjt:  EYYFRLTKRMMALVEEEEAVKDMQEPIFVERLAK

XP_022939501.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita moschata]

3.1e-63

90.3

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Query:  MLKKLRYWNPRLSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHND
        +L K R+W+PRLSSPY+LK FLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNI+LRCPNQTAPVKFLQKKFKTLD QGKALNWLKKYP CFEVYLHND
Subjt:  MLKKLRYWNPRLSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHND

Query:  EYYFRLTKRMMALVEEEEAVKDMQEPIFVERLAK
        EYYFRLTKRMMALVEEEE +KDMQEP FVERLAK
Subjt:  EYYFRLTKRMMALVEEEEAVKDMQEPIFVERLAK

XP_022993888.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita maxima]

5.2e-63

90.3

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Query:  MLKKLRYWNPRLSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHND
        +L+K R+W+PRLSSPY+LK FLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNI+LRCPNQTAPVKFLQKKFKTLD QGKALNWLKKYP CFEVYLH+D
Subjt:  MLKKLRYWNPRLSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHND

Query:  EYYFRLTKRMMALVEEEEAVKDMQEPIFVERLAK
        EYYFRLTKRMMALVEEEE VKDMQEP FVERLAK
Subjt:  EYYFRLTKRMMALVEEEEAVKDMQEPIFVERLAK

XP_023551426.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita pepo subsp. pepo]

1.2e-62

90.3

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Query:  MLKKLRYWNPRLSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHND
        +L+K R+W+PRLSSPY LK F RNFSLWSMKKDPDLESALSRNRRWIVNNQIKNI+LRCPNQTAPVKFLQKKFKTLD QGKALNWLKKYP CFEVYLHND
Subjt:  MLKKLRYWNPRLSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHND

Query:  EYYFRLTKRMMALVEEEEAVKDMQEPIFVERLAK
        EYYFRLTKRMMALVEEEE VKDMQEP FVERLAK
Subjt:  EYYFRLTKRMMALVEEEEAVKDMQEPIFVERLAK

TrEMBL top hits

e value

%identity

Alignment

A0A1S4DTX7 LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 1

1.1e-58

85.82

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Query:  MLKKLRYWNPRLSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHND
        +L+K RYW+P LSSP  LKY LRNFSLWSMKKDPDLESALSRNRRWI NNQIKNIILRCP+Q APVKFLQKKFKTLDLQGKALNWLKKYP CFEVYL+ND
Subjt:  MLKKLRYWNPRLSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHND

Query:  EYYFRLTKRMMALVEEEEAVKDMQEPIFVERLAK
        E+YFRLTKRMMALVEEEE VKDMQEP  V+RL K
Subjt:  EYYFRLTKRMMALVEEEEAVKDMQEPIFVERLAK

A0A5D3DGZ3 Protein ROOT PRIMORDIUM DEFECTIVE 1

1.1e-58

85.82

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Query:  MLKKLRYWNPRLSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHND
        +L+K RYW+P LSSP  LKY LRNFSLWSMKKDPDLESALSRNRRWI NNQIKNIILRCP+Q APVKFLQKKFKTLDLQGKALNWLKKYP CFEVYL+ND
Subjt:  MLKKLRYWNPRLSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHND

Query:  EYYFRLTKRMMALVEEEEAVKDMQEPIFVERLAK
        E+YFRLTKRMMALVEEEE VKDMQEP  V+RL K
Subjt:  EYYFRLTKRMMALVEEEEAVKDMQEPIFVERLAK

A0A6J1C186 protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1

2.9e-59

86.57

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Query:  MLKKLRYWNPRLSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHND
        +L+K RYWNP LSS  ALKY LRNFSLWSMKK+PDLESALSRNRRWIVNNQIKNI+L+ PNQ APVKFLQK+FKTLDLQGKALNWLKKYP CFEVYL ND
Subjt:  MLKKLRYWNPRLSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHND

Query:  EYYFRLTKRMMALVEEEEAVKDMQEPIFVERLAK
        EYYFRLTKRMMALVEEE A+KDMQEP+FVERLAK
Subjt:  EYYFRLTKRMMALVEEEEAVKDMQEPIFVERLAK

A0A6J1FG34 protein WHAT'S THIS FACTOR 1 homolog

1.5e-63

90.3

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Query:  MLKKLRYWNPRLSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHND
        +L K R+W+PRLSSPY+LK FLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNI+LRCPNQTAPVKFLQKKFKTLD QGKALNWLKKYP CFEVYLHND
Subjt:  MLKKLRYWNPRLSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHND

Query:  EYYFRLTKRMMALVEEEEAVKDMQEPIFVERLAK
        EYYFRLTKRMMALVEEEE +KDMQEP FVERLAK
Subjt:  EYYFRLTKRMMALVEEEEAVKDMQEPIFVERLAK

A0A6J1K3L2 protein ROOT PRIMORDIUM DEFECTIVE 1

2.5e-63

90.3

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Query:  MLKKLRYWNPRLSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHND
        +L+K R+W+PRLSSPY+LK FLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNI+LRCPNQTAPVKFLQKKFKTLD QGKALNWLKKYP CFEVYLH+D
Subjt:  MLKKLRYWNPRLSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHND

Query:  EYYFRLTKRMMALVEEEEAVKDMQEPIFVERLAK
        EYYFRLTKRMMALVEEEE VKDMQEP FVERLAK
Subjt:  EYYFRLTKRMMALVEEEEAVKDMQEPIFVERLAK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G31290.1 Ubiquitin carboxyl-terminal hydrolase family protein

4.6e-49

76.42

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Query:  LSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHNDEYYFRLTKRMM
        L + YA    +R FSLWS KKDPDLESALSRN+RWIVN+++KNIILRCPNQ A +KFLQKKFKTLDLQGKALNWLKKYP CF VYL NDEYY RLTK MM
Subjt:  LSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHNDEYYFRLTKRMM

Query:  ALVEEEEAVKDMQEPIFVERLAK
         LVEEEE VKD QEP+  +RLAK
Subjt:  ALVEEEEAVKDMQEPIFVERLAK

AT2G31290.2 Ubiquitin carboxyl-terminal hydrolase family protein

4.6e-49

76.42

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Query:  LSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHNDEYYFRLTKRMM
        L + YA    +R FSLWS KKDPDLESALSRN+RWIVN+++KNIILRCPNQ A +KFLQKKFKTLDLQGKALNWLKKYP CF VYL NDEYY RLTK MM
Subjt:  LSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHNDEYYFRLTKRMM

Query:  ALVEEEEAVKDMQEPIFVERLAK
         LVEEEE VKD QEP+  +RLAK
Subjt:  ALVEEEEAVKDMQEPIFVERLAK

Sequences

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CDS sequence

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ATGCTGAAGAAGCTTAGGTATTGGAATCCTAGGCTCTCATCTCCTTATGCCTTGAAATACTTCCTTAGGAATTTTTCTCTATGGTCAATGAAGAAAGACCCCGACCTTGA
ATCAGCTCTATCTCGTAACCGTCGATGGATTGTCAATAACCAAATAAAAAATATCATCCTTCGTTGTCCTAATCAGACAGCACCAGTAAAGTTTCTCCAGAAGAAGTTTA
AAACCCTTGACCTTCAAGGCAAAGCCCTTAACTGGCTGAAAAAGTATCCTCGCTGCTTTGAAGTTTATCTCCACAATGATGAGTACTACTTTCGGCTGACAAAGAGGATG
ATGGCTTTGGTTGAGGAGGAAGAAGCTGTCAAAGATATGCAGGAGCCCATTTTTGTTGAGCGATTGGCTAAGTAG

mRNA sequence

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Protein sequence

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MLKKLRYWNPRLSSPYALKYFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQTAPVKFLQKKFKTLDLQGKALNWLKKYPRCFEVYLHNDEYYFRLTKRM
MALVEEEEAVKDMQEPIFVERLAK

Lcy09g010280 (gene) of Sponge gourd (P93075) v1 genome