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Lcy09g012080 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy09g012080
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptiontransmembrane protein 50A
Genome locationChr09:13181114..13185664
RNA-Seq ExpressionLcy09g012080
SyntenyLcy09g012080
Gene Ontology termsGO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007919 - Uncharacterised protein family UPF0220


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8077392.1 hypothetical protein FH972_015959 [Carpinus fangiana]2.7e-4969.66Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRSHGFLLCAQPSSKCSGYLLIKGVEAL
        MDL ELW+IFGPGVAGAVFGAGWWFWVDAVVCSSV VSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR              SG L +  +EAL
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRSHGFLLCAQPSSKCSGYLLIKGVEAL

Query:  ALLRLCGIIRFISSISGTLDTRFDSKNWPISVDRSCRSIAVCVCV
        A LRLC ++   S ISG++DT F   NWP  VD +CR +AVCV V
Subjt:  ALLRLCGIIRFISSISGTLDTRFDSKNWPISVDRSCRSIAVCVCV

KAF4352908.1 hypothetical protein F8388_003299 [Cannabis sativa]3.7e-4663.4Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRSHGFLLCAQ-----PSSKCSGYLLIK
        MDL ELW+IFGPGV+GA+FGAGWWFW+DAVVCSSV VSF+HYLPGIFAS AALMFNCVRKEDIDYSPYEEGEWR++   L A+      + K    L   
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRSHGFLLCAQ-----PSSKCSGYLLIK

Query:  G----VEALALLRLCGIIRFISSISGTLDTRFDSKNWPISVDRSCRSIAVCVC
        G    VEALA+L +C ++ F    SG+ DTRF S+NWP S+DR+   +AVCVC
Subjt:  G----VEALALLRLCGIIRFISSISGTLDTRFDSKNWPISVDRSCRSIAVCVC

KAF9687258.1 hypothetical protein SADUNF_Sadunf02G0074800 [Salix dunnii]1.8e-4050.49Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEW-------RSHG------------FLLC
        MDL ELW+IFGP VAGAVFG GWWFW+DAVVCSSV VSFVHYLPGIFAS AALMFNCVRKEDIDYSPYEEGEW       R H             FL C
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEW-------RSHG------------FLLC

Query:  --------AQ----------------------PSSKCSGYLL---------IKGVEALALLRLCGIIRFISSISGTLDTRFDSKNWPISVDRSCRSIAVC
                AQ                      PS  C  + L         +  +EALA L +C ++R  SSISG +D+RF  +N   SVDR+C   AVC
Subjt:  --------AQ----------------------PSSKCSGYLL---------IKGVEALALLRLCGIIRFISSISGTLDTRFDSKNWPISVDRSCRSIAVC

Query:  VCVE
        VC +
Subjt:  VCVE

KAF9863236.1 hypothetical protein H0E87_013865 [Populus deltoides]1.4e-4262.84Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEW-----RSHGFLLCAQPSSKCSGYLLIK
        MDL ELW+I GP VAGAVFG GWWFW+DAVVCSSV VSFVHYLPGIFAS AALMFNCVRKEDIDYSPYEEGEW     +S   L   QP+          
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEW-----RSHGFLLCAQPSSKCSGYLLIK

Query:  GVEALALLRLCGIIRFISSISGTLDTRFDSKNWPISVDRSCRSIAVCV
         +EALA L +C ++   SSISG +D+RF+ +N   SVDR+C   AVCV
Subjt:  GVEALALLRLCGIIRFISSISGTLDTRFDSKNWPISVDRSCRSIAVCV

RZC54295.1 hypothetical protein C5167_013155 [Papaver somniferum]9.7e-3956.89Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR------------------SHGF----
        MD  ELW+IFGPG AGAVFGAGWWFWVDAVVCS+VAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR                    GF    
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR------------------SHGF----

Query:  ---LLCAQPSSKCSGYLLIKGVEALALLRLCGIIRFISSISGTLDTRFDSKNWPISVDRSCRSIAVC
           L C Q       Y  ++ +EALALL +   +R   SI  ++DTR    NWP+ +DR    +AVC
Subjt:  ---LLCAQPSSKCSGYLLIKGVEALALLRLCGIIRFISSISGTLDTRFDSKNWPISVDRSCRSIAVC

TrEMBL top hitse value%identityAlignment
A0A4Y7J3R4 Uncharacterized protein4.7e-3956.89Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR------------------SHGF----
        MD  ELW+IFGPG AGAVFGAGWWFWVDAVVCS+VAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR                    GF    
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR------------------SHGF----

Query:  ---LLCAQPSSKCSGYLLIKGVEALALLRLCGIIRFISSISGTLDTRFDSKNWPISVDRSCRSIAVC
           L C Q       Y  ++ +EALALL +   +R   SI  ++DTR    NWP+ +DR    +AVC
Subjt:  ---LLCAQPSSKCSGYLLIKGVEALALLRLCGIIRFISSISGTLDTRFDSKNWPISVDRSCRSIAVC

A0A5D3DT37 Transmembrane protein 50A3.7e-36100Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR

A0A5N6REP4 Uncharacterized protein1.3e-4969.66Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRSHGFLLCAQPSSKCSGYLLIKGVEAL
        MDL ELW+IFGPGVAGAVFGAGWWFWVDAVVCSSV VSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR              SG L +  +EAL
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRSHGFLLCAQPSSKCSGYLLIKGVEAL

Query:  ALLRLCGIIRFISSISGTLDTRFDSKNWPISVDRSCRSIAVCVCV
        A LRLC ++   S ISG++DT F   NWP  VD +CR +AVCV V
Subjt:  ALLRLCGIIRFISSISGTLDTRFDSKNWPISVDRSCRSIAVCVCV

A0A7J6E3E0 Uncharacterized protein1.8e-4663.4Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRSHGFLLCAQ-----PSSKCSGYLLIK
        MDL ELW+IFGPGV+GA+FGAGWWFW+DAVVCSSV VSF+HYLPGIFAS AALMFNCVRKEDIDYSPYEEGEWR++   L A+      + K    L   
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRSHGFLLCAQ-----PSSKCSGYLLIK

Query:  G----VEALALLRLCGIIRFISSISGTLDTRFDSKNWPISVDRSCRSIAVCVC
        G    VEALA+L +C ++ F    SG+ DTRF S+NWP S+DR+   +AVCVC
Subjt:  G----VEALALLRLCGIIRFISSISGTLDTRFDSKNWPISVDRSCRSIAVCVC

Q9LP91 T32E20.291.0e-3854.11Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRSHGFLLCAQPSSKCSGYLLIKGVEAL
        MDLAELW+IFGPG +GAVFG GWWFWVDAVVCSS+ V FVHYLPGIFAS  ALMFNCVRKEDIDYSPY+EGEWR   +L           + + + +EA+
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRSHGFLLCAQPSSKCSGYLLIKGVEAL

Query:  ALLRLCGIIRFISSISGTLDTRFDSKNWPISVDRSCRSIAVCVCVE
        A   +C  I F+S      D+RF  ++W  ++D     +++C+C++
Subjt:  ALLRLCGIIRFISSISGTLDTRFDSKNWPISVDRSCRSIAVCVCVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G36980.1 unknown protein1.1e-3580.49Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRSHGFLLCA
        MDLAELW+IFGPG +GAVFG GWWFWVDAVVCSS+ V FVHYLPGIFAS  ALMFNCVRKEDIDYSPY+EGEWR   +L  A
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRSHGFLLCA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTGGCGGAGCTGTGGTCAATTTTCGGCCCAGGTGTCGCCGGAGCTGTGTTCGGTGCCGGATGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTT
GCCGTATCCTTCGTCCACTACCTCCCAGGTATTTTTGCTTCTTTTGCGGCTCTGATGTTCAATTGCGTTCGGAAAGAAGACATCGATTATTCTCCATACGAGGAA
GGCGAATGGAGAAGCCATGGTTTCCTGCTGTGCGCACAGCCCAGTAGCAAATGCTCTGGATATCTGCTTATTAAAGGTGTTGAAGCTTTGGCTCTTCTTCGCTTA
TGTGGTATCATTCGTTTCATTAGCAGCATCAGTGGGACTCTTGATACAAGATTCGATAGTAAAAACTGGCCCATCAGTGTGGACAGGAGTTGCAGGAGTATTGCA
GTGTGTGTTTGTGTTGAGCCAAAGCAGAACGCCTCTAGCACGAATGACGACCTACCGTCCTCACAATCTAGCAAGATTCTTGAAGGGATGAAGAAATGTAAGGGT
CTTCTGGTTGAAATCTCCTTCGACTCTCAATCTTCTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTGGCGGAGCTGTGGTCAATTTTCGGCCCAGGTGTCGCCGGAGCTGTGTTCGGTGCCGGATGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTT
GCCGTATCCTTCGTCCACTACCTCCCAGGTATTTTTGCTTCTTTTGCGGCTCTGATGTTCAATTGCGTTCGGAAAGAAGACATCGATTATTCTCCATACGAGGAA
GGCGAATGGAGAAGCCATGGTTTCCTGCTGTGCGCACAGCCCAGTAGCAAATGCTCTGGATATCTGCTTATTAAAGGTGTTGAAGCTTTGGCTCTTCTTCGCTTA
TGTGGTATCATTCGTTTCATTAGCAGCATCAGTGGGACTCTTGATACAAGATTCGATAGTAAAAACTGGCCCATCAGTGTGGACAGGAGTTGCAGGAGTATTGCA
GTGTGTGTTTGTGTTGAGCCAAAGCAGAACGCCTCTAGCACGAATGACGACCTACCGTCCTCACAATCTAGCAAGATTCTTGAAGGGATGAAGAAATGTAAGGGT
CTTCTGGTTGAAATCTCCTTCGACTCTCAATCTTCTGAATGA
Protein sequenceShow/hide protein sequence
MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRSHGFLLCAQPSSKCSGYLLIKGVEALALLRL
CGIIRFISSISGTLDTRFDSKNWPISVDRSCRSIAVCVCVEPKQNASSTNDDLPSSQSSKILEGMKKCKGLLVEISFDSQSSE