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Lcy09g013610 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy09g013610
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionmediator of RNA polymerase II transcription subunit 15a
Genome locationChr09:15192983..15195202
RNA-Seq ExpressionLcy09g013610
SyntenyLcy09g013610
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003713 - transcription coactivator activity (molecular function)
GO:0031490 - chromatin DNA binding (molecular function)
InterPro domainsIPR036529 - Coactivator CBP, KIX domain superfamily
IPR036546 - Mediator complex subunit 15, KIX domain
IPR044661 - Mediator of RNA polymerase II transcription subunit 15a/b/c-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571702.1 Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia]1.1e-2868.87Show/hide
Query:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK
        M+TNN RP QG EP                GIEA DWRSQLQPDSRQRIV KIMETLKRHLPV G +GLSEL+KI  RFEE++YT A SQSDYLRKISLK
Subjt:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK

Query:  MLSMET
        ML+MET
Subjt:  MLSMET

KAG7011427.1 Mediator of RNA polymerase II transcription subunit 15a [Cucurbita argyrosperma subsp. argyrosperma]1.1e-2868.87Show/hide
Query:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK
        M+TNN RP QG EP                GIEA DWRSQLQPDSRQRIV KIMETLKRHLPV G +GLSEL+KI  RFEE++YT A SQSDYLRKISLK
Subjt:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK

Query:  MLSMET
        ML+MET
Subjt:  MLSMET

XP_022963528.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata]1.1e-2868.87Show/hide
Query:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK
        M+TNN RP QG EP                GIEA DWRSQLQPDSRQRIV KIMETLKRHLPV G +GLSEL+KI  RFEE++YT A SQSDYLRKISLK
Subjt:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK

Query:  MLSMET
        ML+MET
Subjt:  MLSMET

XP_023553730.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo]1.1e-2868.87Show/hide
Query:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK
        M+TNN RP QG EP                GIEA DWRSQLQPDSRQRIV KIMETLKRHLPV G +GLSEL+KI  RFEE++YT A SQSDYLRKISLK
Subjt:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK

Query:  MLSMET
        ML+MET
Subjt:  MLSMET

XP_038887807.1 mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida]1.1e-2868.87Show/hide
Query:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK
        M+ NN RP QG EP                GIEA DWRSQLQPDSRQRIV KIMETLKRHLPV G +GLSELRKI  RFEE++YT A SQSDYLRKISLK
Subjt:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK

Query:  MLSMET
        ML+MET
Subjt:  MLSMET

TrEMBL top hitse value%identityAlignment
A0A1S3C0H1 mediator of RNA polymerase II transcription subunit 15a1.8e-2766.04Show/hide
Query:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK
        M+ NN RP QG EP                G+EA DWRSQLQPDSR RIV KIMETLKRHLPV G +GLSELRKI  RFEE+++T A SQSDYLRKISLK
Subjt:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK

Query:  MLSMET
        ML+MET
Subjt:  MLSMET

A0A5D3C6P8 Mediator of RNA polymerase II transcription subunit 15a1.8e-2766.04Show/hide
Query:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK
        M+ NN RP QG EP                G+EA DWRSQLQPDSR RIV KIMETLKRHLPV G +GLSELRKI  RFEE+++T A SQSDYLRKISLK
Subjt:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK

Query:  MLSMET
        ML+MET
Subjt:  MLSMET

A0A6J1HI15 mediator of RNA polymerase II transcription subunit 15a-like isoform X15.6e-2968.87Show/hide
Query:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK
        M+TNN RP QG EP                GIEA DWRSQLQPDSRQRIV KIMETLKRHLPV G +GLSEL+KI  RFEE++YT A SQSDYLRKISLK
Subjt:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK

Query:  MLSMET
        ML+MET
Subjt:  MLSMET

A0A6J1HR60 mediator of RNA polymerase II transcription subunit 15a-like isoform X12.8e-2867.92Show/hide
Query:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK
        M+TNN RP QG EP                GIE  DWRSQLQPDSRQRIV KIMETLKRHLPV G +GLSEL+KI  RFEE++YT A SQSDYLRKISLK
Subjt:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK

Query:  MLSMET
        ML+MET
Subjt:  MLSMET

G7IM96 Putative coactivator CBP, KIX domain-containing protein5.2e-2763.21Show/hide
Query:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK
        M+TNN RP+QG EP                 ++ SDWR QLQP+SRQRIV KIM+TLKRHLPV G +GL ELRKI +RFEE++YT A SQSDYLRKISLK
Subjt:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK

Query:  MLSMET
        ML+MET
Subjt:  MLSMET

SwissProt top hitse value%identityAlignment
F4I171 Mediator of RNA polymerase II transcription subunit 15a2.0e-2354.72Show/hide
Query:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK
        M+ NN RP          G P   TG         DWR+QL PDSRQ+IV KIMETLK+HLP  GP+G++ELR+I  RFEE++++GA +Q+DYLRKIS+K
Subjt:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK

Query:  MLSMET
        ML+MET
Subjt:  MLSMET

Arabidopsis top hitse value%identityAlignment
AT1G15780.1 unknown protein1.4e-2454.72Show/hide
Query:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK
        M+ NN RP          G P   TG         DWR+QL PDSRQ+IV KIMETLK+HLP  GP+G++ELR+I  RFEE++++GA +Q+DYLRKIS+K
Subjt:  METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLK

Query:  MLSMET
        ML+MET
Subjt:  MLSMET

AT1G15790.1 unknown protein3.1e-1654.93Show/hide
Query:  DWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLKMLSMET
        DWR+Q    SR RIV KIMET  + LP   P+G +ELRKI  RFEE+++  A++Q++YLR+I +KML+MET
Subjt:  DWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLKMLSMET

AT1G15790.2 unknown protein3.1e-1654.93Show/hide
Query:  DWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLKMLSMET
        DWR+Q    SR RIV KIMET  + LP   P+G +ELRKI  RFEE+++  A++Q++YLR+I +KML+MET
Subjt:  DWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLKMLSMET

AT2G10440.2 unknown protein4.2e-0530.95Show/hide
Query:  PRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVD------GPDGLSELRKIVERFEEEVYTGANSQSDYLRKIS
        P    G         DWRSQ +P+ RQ+++ KI+ +L  +  V+            ++  I  +FEE  Y+ A  ++DYLRK+S
Subjt:  PRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVD------GPDGLSELRKIVERFEEEVYTGANSQSDYLRKIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACAAATAATCGGAGACCTGACCAAGGCAAAGAACCTTTCAGCGCTGCCGGAGGTCCCCGATCAACAACAGGTGGCAGCTCAACCGGAATCGAGGCCAGC
GATTGGAGGTCTCAATTGCAGCCCGATTCTCGACAACGAATTGTTAAGAAGATAATGGAGACATTGAAGAGGCACCTTCCTGTTGATGGTCCTGATGGATTGAGT
GAGCTGAGGAAGATTGTTGAAAGGTTTGAGGAAGAGGTTTATACTGGCGCCAACAGTCAGTCAGATTACCTGAGGAAAATTTCTCTGAAAATGCTGAGTATGGAA
ACCACCTAG
mRNA sequenceShow/hide mRNA sequence
GGATTCTCCTTGATTTCCCCAATTACCACATAGATCTTTGAATTAGACCCCTCTTTTCCTGCAATCGATTACTCCTCATCGCGTCAGCGTATTCAACTTGTCAAA
CTTTTGAATGGAAACAAATAATCGGAGACCTGACCAAGGCAAAGAACCTTTCAGCGCTGCCGGAGGTCCCCGATCAACAACAGGTGGCAGCTCAACCGGAATCGA
GGCCAGCGATTGGAGGTCTCAATTGCAGCCCGATTCTCGACAACGAATTGTTAAGAAGATAATGGAGACATTGAAGAGGCACCTTCCTGTTGATGGTCCTGATGG
ATTGAGTGAGCTGAGGAAGATTGTTGAAAGGTTTGAGGAAGAGGTTTATACTGGCGCCAACAGTCAGTCAGATTACCTGAGGAAAATTTCTCTGAAAATGCTGAG
TATGGAAACCACCTAGGCACCTATGGTGCCTGTCAATGAGCCTCTGGATTCTGAGGATCATTATGAGCCCAATGATGCTAAGGTGGAGACTCGTGAGGAATGACT
GACCTGAGTAGTTATCTCTTTATTTTACTTTGCTTTGTTGAGATAAGATCCTAGTTTCTCGTTTTTAGACTTTAGGTGGATTTAGACTTTTGGCTCTTTTGTAAT
AATTTTGAATCGTGAATTAGT
Protein sequenceShow/hide protein sequence
METNNRRPDQGKEPFSAAGGPRSTTGGSSTGIEASDWRSQLQPDSRQRIVKKIMETLKRHLPVDGPDGLSELRKIVERFEEEVYTGANSQSDYLRKISLKMLSME
TT