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Lcy09g014560 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy09g014560
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRuvB-like helicase
Genome locationChr09:17643556..17644208
RNA-Seq ExpressionLcy09g014560
SyntenyLcy09g014560
Gene Ontology termsGO:0000492 - box C/D snoRNP assembly (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0006338 - chromatin remodeling (biological process)
GO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0032508 - DNA duplex unwinding (biological process)
GO:0016573 - histone acetylation (biological process)
GO:0000812 - Swr1 complex (cellular component)
GO:0097255 - R2TP complex (cellular component)
GO:0035267 - NuA4 histone acetyltransferase complex (cellular component)
GO:0031011 - Ino80 complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0009536 - plastid (cellular component)
GO:0016887 - ATPase activity (molecular function)
GO:0009378 - four-way junction helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0043139 - 5'-3' DNA helicase activity (molecular function)
GO:0003725 - double-stranded RNA binding (molecular function)
InterPro domainsIPR010339 - TIP49, P-loop domain
IPR012340 - Nucleic acid-binding, OB-fold
IPR027238 - RuvB-like
IPR042487 - RuvBL1/2, DNA/RNA binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9463420.1 hypothetical protein C3L33_04672, partial [Rhododendron williamsianum]1.5e-4695.24Show/hide
Query:  MVGSEVYSSEVKKIEVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE
        MVGSEVYSSEVKK EVTELSPEETESVTGGYGKSISHVIIGLKT+ GTKQLKLDPTIYDAL+KEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE
Subjt:  MVGSEVYSSEVKKIEVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE

Query:  YVPPP
        YVP P
Subjt:  YVPPP

KAF7152536.1 hypothetical protein RHSIM_Rhsim01G0217300 [Rhododendron simsii]1.5e-4695.24Show/hide
Query:  MVGSEVYSSEVKKIEVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE
        MVGSEVYSSEVKK EVTELSPEETESVTGGYGKSISHVIIGLKT+ GTKQLKLDPTIYDAL+KEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE
Subjt:  MVGSEVYSSEVKKIEVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE

Query:  YVPPP
        YVP P
Subjt:  YVPPP

KAG5566735.1 hypothetical protein RHGRI_002320 [Rhododendron griersonianum]1.5e-4695.24Show/hide
Query:  MVGSEVYSSEVKKIEVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE
        MVGSEVYSSEVKK EVTELSPEETESVTGGYGKSISHVIIGLKT+ GTKQLKLDPTIYDAL+KEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE
Subjt:  MVGSEVYSSEVKKIEVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE

Query:  YVPPP
        YVP P
Subjt:  YVPPP

OWM69019.1 hypothetical protein CDL15_Pgr025206 [Punica granatum]1.2e-4695.24Show/hide
Query:  MVGSEVYSSEVKKIEVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE
        MVGSEVYSSEVKK EVTELSPEETESVTGGYGKSISHVI+GLKT++GTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE
Subjt:  MVGSEVYSSEVKKIEVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE

Query:  YVPPP
        YVP P
Subjt:  YVPPP

PSR95186.1 RuvB-like protein [Actinidia chinensis var. chinensis]1.3e-4584.68Show/hide
Query:  MVGSEVYSSEVKKIEVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE
        MVGSEVYSSEVKK EVTELSPEETE+VTGGYGKSISHVIIGLKT++GTKQLKLDPTIYDALIKEKVAVGDVIYIE NSGAVKRVGRSDAFATEFDLEAEE
Subjt:  MVGSEVYSSEVKKIEVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE

Query:  YVPPPGCLAVKFIFIVFHFFNIVI
        YVP P     K   IV  +F I+I
Subjt:  YVPPPGCLAVKFIFIVFHFFNIVI

TrEMBL top hitse value%identityAlignment
A0A218W951 RuvB-like helicase5.6e-4795.24Show/hide
Query:  MVGSEVYSSEVKKIEVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE
        MVGSEVYSSEVKK EVTELSPEETESVTGGYGKSISHVI+GLKT++GTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE
Subjt:  MVGSEVYSSEVKKIEVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE

Query:  YVPPP
        YVP P
Subjt:  YVPPP

A0A2G2YHR1 RuvB-like helicase6.8e-4593.33Show/hide
Query:  MVGSEVYSSEVKKIEVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE
        MVGSEVYSSEVKK EVTELSPEE ESVTGGYGKSIS VIIGLKT++GTKQLKLDPTIYDALIKEKVAVGDVIYIE+NSGAVKRVGRSDAFATEFDLEAEE
Subjt:  MVGSEVYSSEVKKIEVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE

Query:  YVPPP
        YVP P
Subjt:  YVPPP

A0A2R6PQ55 RuvB-like helicase6.2e-4684.68Show/hide
Query:  MVGSEVYSSEVKKIEVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE
        MVGSEVYSSEVKK EVTELSPEETE+VTGGYGKSISHVIIGLKT++GTKQLKLDPTIYDALIKEKVAVGDVIYIE NSGAVKRVGRSDAFATEFDLEAEE
Subjt:  MVGSEVYSSEVKKIEVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE

Query:  YVPPPGCLAVKFIFIVFHFFNIVI
        YVP P     K   IV  +F I+I
Subjt:  YVPPPGCLAVKFIFIVFHFFNIVI

A0A6A3D2E6 RuvB-like 11.4e-4593.33Show/hide
Query:  MVGSEVYSSEVKKIEVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE
        MVGSEVYSSEVKK EVT+LSPE+TESVTGGYGKSISHVIIGLKT++GTKQLKLDPTIYDALIKEKVAVGDVIYIEANSG VKRVGRSDAFATEFDLEAEE
Subjt:  MVGSEVYSSEVKKIEVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE

Query:  YVPPP
        YVP P
Subjt:  YVPPP

A0A6A4LZA9 RuvB-like helicase (Fragment)7.3e-4795.24Show/hide
Query:  MVGSEVYSSEVKKIEVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE
        MVGSEVYSSEVKK EVTELSPEETESVTGGYGKSISHVIIGLKT+ GTKQLKLDPTIYDAL+KEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE
Subjt:  MVGSEVYSSEVKKIEVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE

Query:  YVPPP
        YVP P
Subjt:  YVPPP

SwissProt top hitse value%identityAlignment
Q4P112 RuvB-like helicase 12.5e-3661.24Show/hide
Query:  MVGSEVYSSEVKKIEV------------------------TELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEA
        MVGSEVYSSEVKK EV                        TEL+P E E+   GYGK+I+HV+I LKT++GTKQL+LDP+IY++++KE+++VGDVIYIEA
Subjt:  MVGSEVYSSEVKKIEV------------------------TELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEA

Query:  NSGAVKRVGRSDAFATEFDLEAEEYVPPP
        N+GAVKRVGRSDA+ATEFDLEAEEYVP P
Subjt:  NSGAVKRVGRSDAFATEFDLEAEEYVPPP

Q8AWW7 RuvB-like 18.6e-3765.89Show/hide
Query:  MVGSEVYSSEVKKI------------------------EVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEA
        MVGSEVYSSE+KK                         EVTEL+P ETE+  GGYGK+ISHVIIGLKT +GTKQLKLDP+IY++L KE+V VGDVIYIEA
Subjt:  MVGSEVYSSEVKKI------------------------EVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEA

Query:  NSGAVKRVGRSDAFATEFDLEAEEYVPPP
        NSGAVKR GR D FATEFDLEAEEYVP P
Subjt:  NSGAVKRVGRSDAFATEFDLEAEEYVPPP

Q9C0X6 RuvB-like helicase 11.9e-3662.79Show/hide
Query:  MVGSEVYSSEVKKI------------------------EVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEA
        MVGSEVYSSE+KK                         EVTE+ PEE E+  GGYGK+ISHV++GLKT +GTKQLKLDP+IY++L +E+V+ GDVIYIEA
Subjt:  MVGSEVYSSEVKKI------------------------EVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEA

Query:  NSGAVKRVGRSDAFATEFDLEAEEYVPPP
        N+GAVKRVGRSDA+ATEFDLEAEEYVP P
Subjt:  NSGAVKRVGRSDAFATEFDLEAEEYVPPP

Q9DE26 RuvB-like 11.1e-3665.12Show/hide
Query:  MVGSEVYSSEVKKI------------------------EVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEA
        MVGSEVYS+E+KK                         EVTEL+P ETE+  GGYGK+ISHVIIGLKT +GTKQLKLDP+IY++L KE+V VGDVIYIEA
Subjt:  MVGSEVYSSEVKKI------------------------EVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEA

Query:  NSGAVKRVGRSDAFATEFDLEAEEYVPPP
        NSGAVKR GRSD +ATEFDLEAEEYVP P
Subjt:  NSGAVKRVGRSDAFATEFDLEAEEYVPPP

Q9FMR9 RuvB-like protein 11.2e-4375.19Show/hide
Query:  MVGSEVYSSEVKKI------------------------EVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEA
        MVGSEVYSSEVKK                         EVTELSPEETES+TGGYGKSISHV+I LKT++GTK LKLDPTIYDALIKEKVAVGDVIYIEA
Subjt:  MVGSEVYSSEVKKI------------------------EVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEA

Query:  NSGAVKRVGRSDAFATEFDLEAEEYVPPP
        NSGAVKRVGRSDAFATEFDLEAEEYVP P
Subjt:  NSGAVKRVGRSDAFATEFDLEAEEYVPPP

Arabidopsis top hitse value%identityAlignment
AT5G22330.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein8.8e-4575.19Show/hide
Query:  MVGSEVYSSEVKKI------------------------EVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEA
        MVGSEVYSSEVKK                         EVTELSPEETES+TGGYGKSISHV+I LKT++GTK LKLDPTIYDALIKEKVAVGDVIYIEA
Subjt:  MVGSEVYSSEVKKI------------------------EVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEA

Query:  NSGAVKRVGRSDAFATEFDLEAEEYVPPP
        NSGAVKRVGRSDAFATEFDLEAEEYVP P
Subjt:  NSGAVKRVGRSDAFATEFDLEAEEYVPPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGATCTGAAGTATACTCATCCGAAGTGAAGAAAATTGAGGTGACTGAACTTTCACCAGAAGAAACAGAGAGTGTGACTGGTGGCTATGGTAAAAGCATA
AGCCATGTTATCATCGGTTTAAAGACTATTGAAGGAACGAAGCAACTAAAATTAGATCCGACTATCTATGATGCCTTAATTAAAGAGAAGGTAGCTGTTGGTGAT
GTTATCTATATTGAAGCGAATAGTGGAGCTGTGAAAAGGGTAGGTAGAAGTGATGCTTTTGCTACAGAGTTTGATCTTGAAGCTGAAGAATATGTTCCACCTCCA
GGTTGCCTTGCTGTGAAATTTATCTTCATTGTGTTCCATTTCTTCAATATTGTAATTATACCTTACACAGTCCTAAATCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGATCTGAAGTATACTCATCCGAAGTGAAGAAAATTGAGGTGACTGAACTTTCACCAGAAGAAACAGAGAGTGTGACTGGTGGCTATGGTAAAAGCATA
AGCCATGTTATCATCGGTTTAAAGACTATTGAAGGAACGAAGCAACTAAAATTAGATCCGACTATCTATGATGCCTTAATTAAAGAGAAGGTAGCTGTTGGTGAT
GTTATCTATATTGAAGCGAATAGTGGAGCTGTGAAAAGGGTAGGTAGAAGTGATGCTTTTGCTACAGAGTTTGATCTTGAAGCTGAAGAATATGTTCCACCTCCA
GGTTGCCTTGCTGTGAAATTTATCTTCATTGTGTTCCATTTCTTCAATATTGTAATTATACCTTACACAGTCCTAAATCTTTAG
Protein sequenceShow/hide protein sequence
MVGSEVYSSEVKKIEVTELSPEETESVTGGYGKSISHVIIGLKTIEGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPPP
GCLAVKFIFIVFHFFNIVIIPYTVLNL