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Lcy09g016540 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy09g016540
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
Genome locationChr09:29568378..29568995
RNA-Seq ExpressionLcy09g016540
SyntenyLcy09g016540
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021838584.1 uncharacterized protein LOC110778326 [Spinacia oleracea]4.8e-0429.73Show/hide
Query:  GVGWIPRDSNESLIEAGCKRINQNWEIKILEAKDILGGIEAYLENSEGWESVFKPPLVVEWDSAAVITTLNGERENRSKLALFTKSILELAHSANVESFS
        G+G + RD    +  A C+++   W + I+EAK I+ G++  L+  E         ++VE D+  +IT L       S L +  + IL L    +  SFS
Subjt:  GVGWIPRDSNESLIEAGCKRINQNWEIKILEAKDILGGIEAYLENSEGWESVFKPPLVVEWDSAAVITTLNGERENRSKLALFTKSILELAHSANVESFS

Query:  KCNRAENSGAH
           R  N  AH
Subjt:  KCNRAENSGAH
XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]8.8e-0634.4Show/hide
Query:  SVKSNTGGVGWIPRDSNESLIEAGCKRINQNWEIKILEAKDILGGIEAYLENSEGWESVFKPPLVVEWDSAAVITTLNGERENRSKLALFTKSILELAHS
        S  ++ GG+GWI R  +  ++ AG + +     +K+LEA  IL G+   L N      V + PL +E DSA V + LN +RE+ +K     + IL L  S
Subjt:  SVKSNTGGVGWIPRDSNESLIEAGCKRINQNWEIKILEAKDILGGIEAYLENSEGWESVFKPPLVVEWDSAAVITTLNGERENRSKLALFTKSILELAHS

Query:  ANVESFSKCNRAENSGAHNLCSMGS
          + +F+K  R  N  AH+L    S
Subjt:  ANVESFSKCNRAENSGAHNLCSMGS
TrEMBL top hitse value%identityAlignment
A0A6J1DNV9 uncharacterized protein LOC1110224034.3e-0634.4Show/hide
Query:  SVKSNTGGVGWIPRDSNESLIEAGCKRINQNWEIKILEAKDILGGIEAYLENSEGWESVFKPPLVVEWDSAAVITTLNGERENRSKLALFTKSILELAHS
        S  ++ GG+GWI R  +  ++ AG + +     +K+LEA  IL G+   L N      V + PL +E DSA V + LN +RE+ +K     + IL L  S
Subjt:  SVKSNTGGVGWIPRDSNESLIEAGCKRINQNWEIKILEAKDILGGIEAYLENSEGWESVFKPPLVVEWDSAAVITTLNGERENRSKLALFTKSILELAHS

Query:  ANVESFSKCNRAENSGAHNLCSMGS
          + +F+K  R  N  AH+L    S
Subjt:  ANVESFSKCNRAENSGAHNLCSMGS
A0A6J1DSV1 uncharacterized protein LOC1110236086.8e-0427.97Show/hide
Query:  SNTGGVGWIPRDSNESLIEAGCKRINQNWEIKILEAKDILGGIEAY-LENSEGWESVFKPPLVVEWDSAAVITTLNGERENRSKLALFTKSILELAHSAN
        +NTGG+GWI RD    +I+A C+ I     I  LE   I  G+ A   E+    +     P+ +E DS   I  L+ + ++++++    + I ++     
Subjt:  SNTGGVGWIPRDSNESLIEAGCKRINQNWEIKILEAKDILGGIEAY-LENSEGWESVFKPPLVVEWDSAAVITTLNGERENRSKLALFTKSILELAHSAN

Query:  VESFSKCNRAENSGAHNL
        + S    +R  N  AH+L
Subjt:  VESFSKCNRAENSGAHNL
A0A803MUM1 Uncharacterized protein4.3e-0626.8Show/hide
Query:  SKAAIIIWCIWKDRNE-CNHSGQRPNLEKSVKSNTGG-VGWIPRDSNESLIEAGCKRINQNWEIKILEAKDILGGIEAYLENSEGWESVFKPPLVVEWDS
        S+  +I W IW +RN   N +  R  ++ +V    G  +G + RD    ++ AGC++++Q+W+  I+EAK ++ G++  ++ +          ++VE D 
Subjt:  SKAAIIIWCIWKDRNE-CNHSGQRPNLEKSVKSNTGG-VGWIPRDSNESLIEAGCKRINQNWEIKILEAKDILGGIEAYLENSEGWESVFKPPLVVEWDS

Query:  AAVITTLNGERENRSKLALFTKSILELAHSANVESFSKCNRAENSGAHNLCSM
          ++  +NG  ++ S L L  K I  +A   +   F+   R  NS AH +  +
Subjt:  AAVITTLNGERENRSKLALFTKSILELAHSANVESFSKCNRAENSGAHNLCSM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTAAAGCAGCTATAATCATTTGGTGCATATGGAAGGATAGAAACGAGTGCAATCACAGTGGACAGAGACCAAATTTGGAGAAATCAGTGAAGTCAAACACTGGAGG
TGTGGGGTGGATTCCTCGTGACTCAAACGAATCTCTGATTGAAGCTGGATGTAAAAGAATTAATCAAAATTGGGAGATTAAAATCCTTGAGGCAAAAGATATCCTCGGGG
GCATAGAAGCTTACTTGGAAAACTCTGAAGGTTGGGAGTCCGTGTTTAAGCCCCCGCTGGTGGTTGAATGGGATTCTGCAGCGGTGATCACGACGCTCAACGGAGAGAGG
GAAAATCGTTCGAAATTAGCTCTGTTCACCAAATCCATTCTTGAGCTTGCTCATTCTGCTAATGTCGAAAGTTTCTCTAAATGTAATAGAGCCGAAAACTCTGGGGCTCA
CAATCTTTGCTCGATGGGGAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTAAAGCAGCTATAATCATTTGGTGCATATGGAAGGATAGAAACGAGTGCAATCACAGTGGACAGAGACCAAATTTGGAGAAATCAGTGAAGTCAAACACTGGAGG
TGTGGGGTGGATTCCTCGTGACTCAAACGAATCTCTGATTGAAGCTGGATGTAAAAGAATTAATCAAAATTGGGAGATTAAAATCCTTGAGGCAAAAGATATCCTCGGGG
GCATAGAAGCTTACTTGGAAAACTCTGAAGGTTGGGAGTCCGTGTTTAAGCCCCCGCTGGTGGTTGAATGGGATTCTGCAGCGGTGATCACGACGCTCAACGGAGAGAGG
GAAAATCGTTCGAAATTAGCTCTGTTCACCAAATCCATTCTTGAGCTTGCTCATTCTGCTAATGTCGAAAGTTTCTCTAAATGTAATAGAGCCGAAAACTCTGGGGCTCA
CAATCTTTGCTCGATGGGGAGCTAA
Protein sequenceShow/hide protein sequence
MSKAAIIIWCIWKDRNECNHSGQRPNLEKSVKSNTGGVGWIPRDSNESLIEAGCKRINQNWEIKILEAKDILGGIEAYLENSEGWESVFKPPLVVEWDSAAVITTLNGER
ENRSKLALFTKSILELAHSANVESFSKCNRAENSGAHNLCSMGS