; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy09g017560 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy09g017560
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationChr09:34728217..34728946
RNA-Seq ExpressionLcy09g017560
SyntenyLcy09g017560
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8543184.1 hypothetical protein F0562_021321 [Nyssa sinensis]2.9e-4545.89Show/hide
Query:  SSLPVSSSSTIQPVSSSVVDLYSNPYYLHHSDGTNLVLVSKPLTESNYASWSQAMIIALTVKNKMGFVDGSLLQSTGT---LRRYWIICNS-VFPLALIS
        SS+  S+S      + S ++  SNPYYLHHSD    +LVS+ LT  NY +WS+AM+IAL+VKNK+GFVDGS+L+  GT   L   WI  N+ V    L S
Subjt:  SSLPVSSSSTIQPVSSSVVDLYSNPYYLHHSDGTNLVLVSKPLTESNYASWSQAMIIALTVKNKMGFVDGSLLQSTGT---LRRYWIICNS-VFPLALIS

Query:  LNLLVKFGLTYSSDPSE------------GTDRVF--RHEILNLAQDQQTLTTYFAKLKSLWNELTTYRPSFSCGRCSCGGVKELNTYFQTEYVMAFLMG
        ++  +   + +++   E               R+F  + E++NL Q+Q +++ YF KLK++W EL+ YR + SCG+CSCGGVK LN + Q EY+M+FLMG
Subjt:  LNLLVKFGLTYSSDPSE------------GTDRVF--RHEILNLAQDQQTLTTYFAKLKSLWNELTTYRPSFSCGRCSCGGVKELNTYFQTEYVMAFLMG

Query:  HNESFAQVRSQLLLMEPEPTIQRAFSLVAQE
         ++SF+QVR QLLLM+P P I R FSL+ QE
Subjt:  HNESFAQVRSQLLLMEPEPTIQRAFSLVAQE

XP_022152756.1 uncharacterized protein LOC111020399 [Momordica charantia]4.9e-5352Show/hide
Query:  SSSSTIQPVSSSVVDLYSNPYYLHHSDGTNLVLVSKPLTESNYASWSQAMIIALTVKNKMGFVDGSLLQSTGTLRRYWIICNS-VFPLALISLNLLVKFG
        +S+STI  ++   ++ Y+NPY+LHHSD T+LVLVS PLT  NY SWS++M+IALTVKNK+GFVDGS+++ TG L   WIICN+ V    L SL+  +   
Subjt:  SSSSTIQPVSSSVVDLYSNPYYLHHSDGTNLVLVSKPLTESNYASWSQAMIIALTVKNKMGFVDGSLLQSTGTLRRYWIICNS-VFPLALISLNLLVKFG

Query:  LTYSSDPSE------------GTDRVF--RHEILNLAQDQQTLTTYFAKLKSLWNELTTYRPSFSCGRCSCGGVKELNTYFQTEYVMAFLMGHNESFAQV
        + +S    E               R+F  R ++ NL QDQ +++ YF  LK+LW EL +Y PS + GRCSCGGVKE+  + Q E+VM FLMG NESF+Q+
Subjt:  LTYSSDPSE------------GTDRVF--RHEILNLAQDQQTLTTYFAKLKSLWNELTTYRPSFSCGRCSCGGVKELNTYFQTEYVMAFLMGHNESFAQV

Query:  RSQLLLMEPEPTIQRAFSLVAQEVE
        R QLLLMEPEPTI R FSLV+QE +
Subjt:  RSQLLLMEPEPTIQRAFSLVAQEVE

XP_022154919.1 uncharacterized protein LOC111022065 [Momordica charantia]5.5e-5250.65Show/hide
Query:  DSSLPVSSSSTIQPVSSSVVDLYSNPYYLHHSDGTNLVLVSKPLTESNYASWSQAMIIALTVKNKMGFVDGSLLQSTGTLRRYWIICNS-VFPLALISLN
        D SL  ++   I P++  VV+ ++NPY+LHHSD T+LVLVS  LT+ NY SWS++++IALTVKNK+GFVDGS+ + T      WIICN+ V      SL+
Subjt:  DSSLPVSSSSTIQPVSSSVVDLYSNPYYLHHSDGTNLVLVSKPLTESNYASWSQAMIIALTVKNKMGFVDGSLLQSTGTLRRYWIICNS-VFPLALISLN

Query:  LLVKFGLTYSSDPSE------------GTDRVF--RHEILNLAQDQQTLTTYFAKLKSLWNELTTYRPSFSCGRCSCGGVKELNTYFQTEYVMAFLMGHN
          +   + +S    E               R+F  R E+ NL QDQ ++T YF +LK+LW+EL  YRP+ SCGRCS GGVK +  ++Q EYVMAFLMG N
Subjt:  LLVKFGLTYSSDPSE------------GTDRVF--RHEILNLAQDQQTLTTYFAKLKSLWNELTTYRPSFSCGRCSCGGVKELNTYFQTEYVMAFLMGHN

Query:  ESFAQVRSQLLLMEPEPTIQRAFSLVAQEVE
         SF+Q+R+QLLLMEP PTI RAF+LVAQE++
Subjt:  ESFAQVRSQLLLMEPEPTIQRAFSLVAQEVE

XP_038874906.1 uncharacterized protein LOC120067409 [Benincasa hispida]2.6e-4648.92Show/hide
Query:  NENQMNPSDSSLPVSSSSTIQPVSSSVVDLYSNPYYLHHSDGTNLVLVSKPLTESNYASWSQAMIIALTVKNKMGFVDGSLLQSTGTLRRYWIICNSVFP
        N+   N S SS   +  +T  P+  S V  YS  Y+LHHSD T+LVLVS  LT+SNY+SWSQ+M ++ TVKNKMGF+DG+L +  G L+  WIICNSV  
Subjt:  NENQMNPSDSSLPVSSSSTIQPVSSSVVDLYSNPYYLHHSDGTNLVLVSKPLTESNYASWSQAMIIALTVKNKMGFVDGSLLQSTGTLRRYWIICNSVFP

Query:  LALISLNLLVKFGLTYSSDPSEGTDRV------------------FRHEILNLAQDQQTLTTYFAKLKSLWNELTTYRPSFSCGRCSCGGVKELNTYFQT
          +   N L K  +  S + S+ T  +                  F  E+ NL QDQ ++  YF KLK+ WNEL +Y+P  SCGRC+CGGVKEL  YFQ 
Subjt:  LALISLNLLVKFGLTYSSDPSEGTDRV------------------FRHEILNLAQDQQTLTTYFAKLKSLWNELTTYRPSFSCGRCSCGGVKELNTYFQT

Query:  EYVMAFLMGHNESFAQVRSQLLLMEPEPTIQ
        E+VM FLMG N SF+Q+R+ LLL  PEPTIQ
Subjt:  EYVMAFLMGHNESFAQVRSQLLLMEPEPTIQ

XP_038875043.1 uncharacterized protein LOC120067569 [Benincasa hispida]8.4e-5351.25Show/hide
Query:  ENENQMNPSDSSLPVSSSSTIQPVSSSVVDLYSNPYYLHHSDGTNLVLVSKPLTESNYASWSQAMIIALTVKNKMGFVDGSLLQSTGTLRRYWIICNSVF
        EN N M  + +S P            S+++ Y NPY+LH  D T+LV +S  LTESNY SWSQAM I LTVKNK+GF++  +   +G L   WIICN V 
Subjt:  ENENQMNPSDSSLPVSSSSTIQPVSSSVVDLYSNPYYLHHSDGTNLVLVSKPLTESNYASWSQAMIIALTVKNKMGFVDGSLLQSTGTLRRYWIICNSVF

Query:  PLALI-SLNLLVKFGLTYSS-------DPSE-----GTDRVF--RHEILNLAQDQQTLTTYFAKLKSLWNELTTYRPSFSCGRCSCGGVKELNTYFQTEY
           ++ SL+  +   + +S+       DP E        RVF  RHEI NL Q+Q ++T Y+ KLK LWNEL +YRPS SCG+ +CG VK L TYFQTEY
Subjt:  PLALI-SLNLLVKFGLTYSS-------DPSE-----GTDRVF--RHEILNLAQDQQTLTTYFAKLKSLWNELTTYRPSFSCGRCSCGGVKELNTYFQTEY

Query:  VMAFLMGHNESFAQVRSQLLLMEPEPTIQRAFSLVAQEVE
        VMAFLMG N+S A +RSQLLLMEPEP+I RAFSLV QE++
Subjt:  VMAFLMGHNESFAQVRSQLLLMEPEPTIQRAFSLVAQEVE

TrEMBL top hitse value%identityAlignment
A0A5J5B2C5 Uncharacterized protein3.8e-4344.59Show/hide
Query:  SSLPVSSSSTIQPVSSSVVDLYSNPYYLHHSDGTNLVLVSKPLTESNYASWSQAMIIALTVKNKMGFVDGSLLQSTGT---LRRYWIICNS-VFPLALIS
        SS+  S+S      + S ++  SNPYYLHHS+    VLVS+ LT  NY +WS+AM+IAL+VKNK+GFVDG + +  GT   L   WI  N+ V    L S
Subjt:  SSLPVSSSSTIQPVSSSVVDLYSNPYYLHHSDGTNLVLVSKPLTESNYASWSQAMIIALTVKNKMGFVDGSLLQSTGT---LRRYWIICNS-VFPLALIS

Query:  LNLLVKFGLTYSSDPSE------------GTDRVF--RHEILNLAQDQQTLTTYFAKLKSLWNELTTYRPSFSCGRCSCGGVKELNTYFQTEYVMAFLMG
        ++  +   + +++   E               R+F  + E++NL Q+Q +++ YF K+K++W EL+ YRP+ SCG+C CGGVK LN Y QTEY+M+FLMG
Subjt:  LNLLVKFGLTYSSDPSE------------GTDRVF--RHEILNLAQDQQTLTTYFAKLKSLWNELTTYRPSFSCGRCSCGGVKELNTYFQTEYVMAFLMG

Query:  HNESFAQVRSQLLLMEPEPTIQRAFSLVAQE
         ++SF+QV  QLLLM+  P I R FSL+ QE
Subjt:  HNESFAQVRSQLLLMEPEPTIQRAFSLVAQE

A0A5J5BKC2 Uncharacterized protein1.4e-4545.89Show/hide
Query:  SSLPVSSSSTIQPVSSSVVDLYSNPYYLHHSDGTNLVLVSKPLTESNYASWSQAMIIALTVKNKMGFVDGSLLQSTGT---LRRYWIICNS-VFPLALIS
        SS+  S+S      + S ++  SNPYYLHHSD    +LVS+ LT  NY +WS+AM+IAL+VKNK+GFVDGS+L+  GT   L   WI  N+ V    L S
Subjt:  SSLPVSSSSTIQPVSSSVVDLYSNPYYLHHSDGTNLVLVSKPLTESNYASWSQAMIIALTVKNKMGFVDGSLLQSTGT---LRRYWIICNS-VFPLALIS

Query:  LNLLVKFGLTYSSDPSE------------GTDRVF--RHEILNLAQDQQTLTTYFAKLKSLWNELTTYRPSFSCGRCSCGGVKELNTYFQTEYVMAFLMG
        ++  +   + +++   E               R+F  + E++NL Q+Q +++ YF KLK++W EL+ YR + SCG+CSCGGVK LN + Q EY+M+FLMG
Subjt:  LNLLVKFGLTYSSDPSE------------GTDRVF--RHEILNLAQDQQTLTTYFAKLKSLWNELTTYRPSFSCGRCSCGGVKELNTYFQTEYVMAFLMG

Query:  HNESFAQVRSQLLLMEPEPTIQRAFSLVAQE
         ++SF+QVR QLLLM+P P I R FSL+ QE
Subjt:  HNESFAQVRSQLLLMEPEPTIQRAFSLVAQE

A0A6J1DIP8 uncharacterized protein LOC1110203992.4e-5352Show/hide
Query:  SSSSTIQPVSSSVVDLYSNPYYLHHSDGTNLVLVSKPLTESNYASWSQAMIIALTVKNKMGFVDGSLLQSTGTLRRYWIICNS-VFPLALISLNLLVKFG
        +S+STI  ++   ++ Y+NPY+LHHSD T+LVLVS PLT  NY SWS++M+IALTVKNK+GFVDGS+++ TG L   WIICN+ V    L SL+  +   
Subjt:  SSSSTIQPVSSSVVDLYSNPYYLHHSDGTNLVLVSKPLTESNYASWSQAMIIALTVKNKMGFVDGSLLQSTGTLRRYWIICNS-VFPLALISLNLLVKFG

Query:  LTYSSDPSE------------GTDRVF--RHEILNLAQDQQTLTTYFAKLKSLWNELTTYRPSFSCGRCSCGGVKELNTYFQTEYVMAFLMGHNESFAQV
        + +S    E               R+F  R ++ NL QDQ +++ YF  LK+LW EL +Y PS + GRCSCGGVKE+  + Q E+VM FLMG NESF+Q+
Subjt:  LTYSSDPSE------------GTDRVF--RHEILNLAQDQQTLTTYFAKLKSLWNELTTYRPSFSCGRCSCGGVKELNTYFQTEYVMAFLMGHNESFAQV

Query:  RSQLLLMEPEPTIQRAFSLVAQEVE
        R QLLLMEPEPTI R FSLV+QE +
Subjt:  RSQLLLMEPEPTIQRAFSLVAQEVE

A0A6J1DNP7 uncharacterized protein LOC1110220652.6e-5250.65Show/hide
Query:  DSSLPVSSSSTIQPVSSSVVDLYSNPYYLHHSDGTNLVLVSKPLTESNYASWSQAMIIALTVKNKMGFVDGSLLQSTGTLRRYWIICNS-VFPLALISLN
        D SL  ++   I P++  VV+ ++NPY+LHHSD T+LVLVS  LT+ NY SWS++++IALTVKNK+GFVDGS+ + T      WIICN+ V      SL+
Subjt:  DSSLPVSSSSTIQPVSSSVVDLYSNPYYLHHSDGTNLVLVSKPLTESNYASWSQAMIIALTVKNKMGFVDGSLLQSTGTLRRYWIICNS-VFPLALISLN

Query:  LLVKFGLTYSSDPSE------------GTDRVF--RHEILNLAQDQQTLTTYFAKLKSLWNELTTYRPSFSCGRCSCGGVKELNTYFQTEYVMAFLMGHN
          +   + +S    E               R+F  R E+ NL QDQ ++T YF +LK+LW+EL  YRP+ SCGRCS GGVK +  ++Q EYVMAFLMG N
Subjt:  LLVKFGLTYSSDPSE------------GTDRVF--RHEILNLAQDQQTLTTYFAKLKSLWNELTTYRPSFSCGRCSCGGVKELNTYFQTEYVMAFLMGHN

Query:  ESFAQVRSQLLLMEPEPTIQRAFSLVAQEVE
         SF+Q+R+QLLLMEP PTI RAF+LVAQE++
Subjt:  ESFAQVRSQLLLMEPEPTIQRAFSLVAQEVE

A0A7J0FKC9 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein1.8e-4543.9Show/hide
Query:  MADDAENENQMNPSDSSLPVSSSSTIQPVSSSVVDLYSNPYYLHHSDGTNLVLVSKPLTESNYASWSQAMIIALTVKNKMGFVDGSLLQSTG---TLRRY
        M ++ E+EN  N   S            ++    D  S+PY+LHHSDG  LVLVS+ LT  NYASW++AMIIAL+VKNK+GF+DGS+ +  G    L   
Subjt:  MADDAENENQMNPSDSSLPVSSSSTIQPVSSSVVDLYSNPYYLHHSDGTNLVLVSKPLTESNYASWSQAMIIALTVKNKMGFVDGSLLQSTG---TLRRY

Query:  WIICNS-VFPLALISLNLLVKFGLTYSSDPSE------------GTDRVF--RHEILNLAQDQQTLTTYFAKLKSLWNELTTYRPSFSCGRCSCGGVKEL
        WI  N+ V    L S++  +   + +S+  +E               R+F  R E++N  QDQ  ++ YF KLK++W EL  YRP+ SCG C+CGGVK+L
Subjt:  WIICNS-VFPLALISLNLLVKFGLTYSSDPSE------------GTDRVF--RHEILNLAQDQQTLTTYFAKLKSLWNELTTYRPSFSCGRCSCGGVKEL

Query:  NTYFQTEYVMAFLMGHNESFAQVRSQLLLMEPEPTIQRAFSLVAQE
        N+++Q EY+M+FLM  + SFAQ+R QLLLM+P P I + FSL++QE
Subjt:  NTYFQTEYVMAFLMGHNESFAQVRSQLLLMEPEPTIQRAFSLVAQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGACGACGCTGAGAACGAGAACCAGATGAATCCCTCTGATTCTTCCCTTCCAGTATCGTCTTCTTCCACGATTCAACCCGTAAGCTCCTCGGTTGTGGAT
TTGTACAGCAACCCATACTACCTTCACCATTCCGATGGCACCAATTTGGTTTTAGTCTCAAAACCATTAACCGAGTCCAATTACGCTTCCTGGAGTCAAGCGATG
ATCATCGCCCTCACCGTGAAGAATAAAATGGGATTTGTTGATGGCTCTTTACTGCAATCGACTGGCACCTTACGACGATATTGGATCATTTGCAATAGTGTGTTT
CCGCTAGCGTTAATTTCGTTGAATCTGCTCGTGAAATTTGGCTTGACCTACAGCAGCGATCCCAGCGAAGGAACAGACCGCGTATTTCGACACGAAATCTTGAAT
CTCGCTCAAGATCAACAAACTCTTACCACCTATTTTGCAAAACTCAAGTCTCTGTGGAATGAACTCACAACATATCGTCCTTCTTTCTCCTGCGGACGATGTTCT
TGTGGAGGTGTAAAGGAATTAAATACTTACTTCCAGACCGAGTACGTTATGGCGTTCCTCATGGGCCACAACGAATCCTTTGCCCAAGTTCGATCTCAATTGTTA
CTCATGGAGCCTGAACCCACCATCCAGAGAGCTTTCTCCCTTGTAGCACAAGAAGTAGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGACGACGCTGAGAACGAGAACCAGATGAATCCCTCTGATTCTTCCCTTCCAGTATCGTCTTCTTCCACGATTCAACCCGTAAGCTCCTCGGTTGTGGAT
TTGTACAGCAACCCATACTACCTTCACCATTCCGATGGCACCAATTTGGTTTTAGTCTCAAAACCATTAACCGAGTCCAATTACGCTTCCTGGAGTCAAGCGATG
ATCATCGCCCTCACCGTGAAGAATAAAATGGGATTTGTTGATGGCTCTTTACTGCAATCGACTGGCACCTTACGACGATATTGGATCATTTGCAATAGTGTGTTT
CCGCTAGCGTTAATTTCGTTGAATCTGCTCGTGAAATTTGGCTTGACCTACAGCAGCGATCCCAGCGAAGGAACAGACCGCGTATTTCGACACGAAATCTTGAAT
CTCGCTCAAGATCAACAAACTCTTACCACCTATTTTGCAAAACTCAAGTCTCTGTGGAATGAACTCACAACATATCGTCCTTCTTTCTCCTGCGGACGATGTTCT
TGTGGAGGTGTAAAGGAATTAAATACTTACTTCCAGACCGAGTACGTTATGGCGTTCCTCATGGGCCACAACGAATCCTTTGCCCAAGTTCGATCTCAATTGTTA
CTCATGGAGCCTGAACCCACCATCCAGAGAGCTTTCTCCCTTGTAGCACAAGAAGTAGAATAA
Protein sequenceShow/hide protein sequence
MADDAENENQMNPSDSSLPVSSSSTIQPVSSSVVDLYSNPYYLHHSDGTNLVLVSKPLTESNYASWSQAMIIALTVKNKMGFVDGSLLQSTGTLRRYWIICNSVF
PLALISLNLLVKFGLTYSSDPSEGTDRVFRHEILNLAQDQQTLTTYFAKLKSLWNELTTYRPSFSCGRCSCGGVKELNTYFQTEYVMAFLMGHNESFAQVRSQLL
LMEPEPTIQRAFSLVAQEVE