CuGenDBv2

Gene ID	Lcy09g018200
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	FACT complex subunit SSRP1
Genome location	Chr09:39528670..39530705
RNA-Seq Expression	Lcy09g018200
Synteny	Lcy09g018200
Gene Ontology terms	GO:0006260 - DNA replication (biological process) GO:0006281 - DNA repair (biological process) GO:0010197 - polar nucleus fusion (biological process) GO:0010228 - vegetative to reproductive phase transition of meristem (biological process) GO:0000791 - euchromatin (cellular component) GO:0035101 - FACT complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0031491 - nucleosome binding (molecular function) GO:0042393 - histone binding (molecular function)
InterPro domains	IPR000969 - Structure-specific recognition protein IPR024954 - SSRP1 domain IPR038167 - SSRP1 domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0053743.1 FACT complex subunit SSRP1 [Cucumis melo var. makuwa]

2.6e-88

78.3

Show/hide

Query:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
        DI+SLT  FQSN GIAPEEKQLSVSG NWGEVDLNGNM TFLVGSKQAFEVSLADVA T LQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
Subjt:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV

Query:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------
        GDE+RP   VFRDKIMSMADV AGIEEAVVTF+GI ILTPRGRYSVELHLSFLRLQG ANDFKIQY SVV LFL  KS                      
Subjt:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------

Query:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS
              F TDYVVQS LQIGDELL+TKYKDKLEPS
Subjt:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS

XP_008443431.1 PREDICTED: FACT complex subunit SSRP1 [Cucumis melo]

2.6e-88

78.3

Show/hide

Query:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
        DI+SLT  FQSN GIAPEEKQLSVSG NWGEVDLNGNM TFLVGSKQAFEVSLADVA T LQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
Subjt:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV

Query:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------
        GDE+RP   VFRDKIMSMADV AGIEEAVVTF+GI ILTPRGRYSVELHLSFLRLQG ANDFKIQY SVV LFL  KS                      
Subjt:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------

Query:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS
              F TDYVVQS LQIGDELL+TKYKDKLEPS
Subjt:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS

XP_022928607.1 FACT complex subunit SSRP1 [Cucurbita moschata]

3.1e-89

78.72

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Query:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
        DITSLT  FQSN GIAPEEKQLSVSG NWGEVDLNGNM TFLVGSKQAFEVSLADVA T LQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
Subjt:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV

Query:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------
        GDEN P   VFRDKIMSMADV AGIEEAVVTF+GI ILTPRGRYSVELHLSFLRLQG ANDFKIQY SVV LFL  KS                      
Subjt:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------

Query:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS
              F TDYVVQS LQIGDELLHTK+KDKLEPS
Subjt:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS

XP_022970630.1 FACT complex subunit SSRP1 [Cucurbita maxima]

1.2e-88

78.3

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Query:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
        DI SLT  FQSN GIAPEEKQLSVSG NWGEVDLNGNM TFLVGSKQAFEVSLADVA T LQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
Subjt:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV

Query:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------
        GDEN P   VFRDKIMSMADV AGIEEAVVTF+GI ILTPRGRYSVELHLSFLRLQG ANDFKIQY SVV LFL  KS                      
Subjt:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------

Query:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS
              F TDYVVQS LQIGDELLHTK+KDKLEPS
Subjt:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS

XP_023531857.1 FACT complex subunit SSRP1 [Cucurbita pepo subsp. pepo]

3.1e-89

78.72

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Query:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
        DITSLT  FQSN GIAPEEKQLSVSG NWGEVDLNGNM TFLVGSKQAFEVSLADVA T LQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
Subjt:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV

Query:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------
        GDEN P   VFRDKIMSMADV AGIEEAVVTF+GI ILTPRGRYSVELHLSFLRLQG ANDFKIQY SVV LFL  KS                      
Subjt:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------

Query:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS
              F TDYVVQS LQIGDELLHTK+KDKLEPS
Subjt:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LG27 FACT complex subunit SSRP1

2.8e-88

77.87

Show/hide

Query:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
        DI+SLT  FQSN GIAPEEKQLSVSG NWGEVDLNGNM TFLVGSKQAFEVSLADVA T LQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
Subjt:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV

Query:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------
        GDE+RP   VFRDKIMSMADV AGIEEAVVTF+GI ILTPRGRYSVELHLSFLRLQG ANDFKIQY SVV LFL  KS                      
Subjt:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------

Query:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS
              F TDYVVQS LQIGDEL +TKYKDKLEPS
Subjt:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS

A0A1S3B828 FACT complex subunit SSRP1

1.3e-88

78.3

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Query:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
        DI+SLT  FQSN GIAPEEKQLSVSG NWGEVDLNGNM TFLVGSKQAFEVSLADVA T LQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
Subjt:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV

Query:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------
        GDE+RP   VFRDKIMSMADV AGIEEAVVTF+GI ILTPRGRYSVELHLSFLRLQG ANDFKIQY SVV LFL  KS                      
Subjt:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------

Query:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS
              F TDYVVQS LQIGDELL+TKYKDKLEPS
Subjt:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS

A0A5A7UCV3 FACT complex subunit SSRP1

1.3e-88

78.3

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Query:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
        DI+SLT  FQSN GIAPEEKQLSVSG NWGEVDLNGNM TFLVGSKQAFEVSLADVA T LQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
Subjt:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV

Query:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------
        GDE+RP   VFRDKIMSMADV AGIEEAVVTF+GI ILTPRGRYSVELHLSFLRLQG ANDFKIQY SVV LFL  KS                      
Subjt:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------

Query:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS
              F TDYVVQS LQIGDELL+TKYKDKLEPS
Subjt:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS

A0A6J1EKE3 FACT complex subunit SSRP1

1.5e-89

78.72

Show/hide

Query:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
        DITSLT  FQSN GIAPEEKQLSVSG NWGEVDLNGNM TFLVGSKQAFEVSLADVA T LQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
Subjt:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV

Query:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------
        GDEN P   VFRDKIMSMADV AGIEEAVVTF+GI ILTPRGRYSVELHLSFLRLQG ANDFKIQY SVV LFL  KS                      
Subjt:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------

Query:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS
              F TDYVVQS LQIGDELLHTK+KDKLEPS
Subjt:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS

A0A6J1I3D5 FACT complex subunit SSRP1

5.7e-89

78.3

Show/hide

Query:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
        DI SLT  FQSN GIAPEEKQLSVSG NWGEVDLNGNM TFLVGSKQAFEVSLADVA T LQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
Subjt:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV

Query:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------
        GDEN P   VFRDKIMSMADV AGIEEAVVTF+GI ILTPRGRYSVELHLSFLRLQG ANDFKIQY SVV LFL  KS                      
Subjt:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------

Query:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS
              F TDYVVQS LQIGDELLHTK+KDKLEPS
Subjt:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS

SwissProt top hits

e value

%identity

Alignment

O04235 FACT complex subunit SSRP1

1.8e-79

68.94

Show/hide

Query:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
        D+ SLTN FQ+ +GI  EEKQLSV+G NWGEVDLNGNM  F+VGSKQAFEVSLADV+ T LQGKNDV+LEFHVDDTTGANEKDSLME+SFHIP++NTQFV
Subjt:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV

Query:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------
        GDENRP   VFRDKIMSMADV  G E+AVVTFDGI ILTPRGRYSVELHLSFLRLQG ANDFKIQY SVV LFL  KS                      
Subjt:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------

Query:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS
              F TD VV S L I ++L ++KYKDKLE S
Subjt:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS

Q05153 FACT complex subunit SSRP1

4.4e-78

67.23

Show/hide

Query:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
        D+ SL++ FQS+YG  P+EKQLSVSG NWGEVDL+GN  TFLVGSKQAFEVSLADV+ T LQGKNDV LEFHVDDT GANEKDSLMEISFHIPN+NTQFV
Subjt:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV

Query:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------
        GDENRP   VF D I++MADV  G+E+AVVTF+ I ILTPRGRY+VELHLSFLRLQG ANDFKIQY SVV LFL  KS                      
Subjt:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------

Query:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS
              F TD VV+S L I DEL++TK+KDKLE S
Subjt:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS

Q39601 FACT complex subunit SSRP1

3.5e-75

67.66

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Query:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
        D+ SLT+  QS  GI PEEKQLSVSG NWGEVDLNGNM TFLVGSKQAFEVSLADVA T LQGKNDVMLEF          K+SLMEISFH+PN+NTQFV
Subjt:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV

Query:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------
        GDENRP   VFRDKIMSMADV AG E+AVVTF+GI ILTPRGRY+VELHLSFLRLQG ANDFKIQY SVV LFL  KS                      
Subjt:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------

Query:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS
              F TDYVV S+L I ++LL TKYKDKLEP+
Subjt:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS

Q9LEF5 FACT complex subunit SSRP1

9.1e-68

59.15

Show/hide

Query:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
        D+++LTN  Q N G+ P+EKQLSVSG NWG +D++GNM TF+VGSKQAFEVSL DVA T +QGK DV+LE HVDDTTGANEKDSLM++SFH+P +NTQFV
Subjt:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV

Query:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKSFSS-------------------
        GDE+RP   +  + I+  ADV    EE VVTF+GI ILTPRGRYSVELHLSFLRLQG ANDFKIQY S+V LFL  KS +                    
Subjt:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKSFSS-------------------

Query:  -----SFGTDYVVQSALQIGDELLHTKYKDKLEPS
              F T+ VV+  L +  ELL  KYKD+LE S
Subjt:  -----SFGTDYVVQSALQIGDELLHTKYKDKLEPS

Q9LGR0 FACT complex subunit SSRP1-A

2.2e-69

60.43

Show/hide

Query:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
        D++SLTN  Q N G++P+EKQLSVSG NWG +D+NGNM TF+VGSKQAFEVSLADV+ T +QGK DV+LEFHVDDTTG NEKDSLM++SFH+P +NTQF+
Subjt:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV

Query:  GDENRPL--VFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKSFSS-------------------
        GDENR    V  + IM +ADV +  EEAVVTF+GI ILTPRGRYSVELHLSFLRLQG ANDFKIQY S+V LFL  KS +                    
Subjt:  GDENRPL--VFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKSFSS-------------------

Query:  -----SFGTDYVVQSALQIGDELLHTKYKDKLEPS
              F T+ VV+  L +  E+L  KYKD+LE S
Subjt:  -----SFGTDYVVQSALQIGDELLHTKYKDKLEPS

Arabidopsis top hits

e value

%identity

Alignment

AT3G28730.1 high mobility group

3.1e-79

67.23

Show/hide

Query:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
        D+ SL++ FQS+YG  P+EKQLSVSG NWGEVDL+GN  TFLVGSKQAFEVSLADV+ T LQGKNDV LEFHVDDT GANEKDSLMEISFHIPN+NTQFV
Subjt:  DITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV

Query:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------
        GDENRP   VF D I++MADV  G+E+AVVTF+ I ILTPRGRY+VELHLSFLRLQG ANDFKIQY SVV LFL  KS                      
Subjt:  GDENRP--LVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKS----------------------

Query:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS
              F TD VV+S L I DEL++TK+KDKLE S
Subjt:  --FSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATGAATGGCCCAAGGACAAACCAGACATCACTAGTTTAACCAACATTTTCCAGAGTAATTATGGAATAGCACCAGAGGAAAAGCAGCTTTCTGTCAGTGGCTGTAA
TTGGGGTGAAGTTGATTTGAATGGGAATATGCGTACTTTCTTGGTTGGTTCAAAGCAAGCATTTGAAGTGTCTTTAGCTGATGTTGCTCTAACAATACTTCAAGGGAAGA
ATGATGTTATGTTAGAGTTCCATGTGGACGATACTACAGGAGCTAATGAGAAAGATTCTCTAATGGAGATAAGTTTTCACATACCAAATACAAATACTCAATTTGTTGGT
GATGAAAATCGTCCTCTTGTCTTTCGTGATAAAATCATGTCTATGGCAGATGTTATTGCGGGCATTGAGGAAGCTGTGGTCACATTTGATGGTATTGGCATCCTCACTCC
AAGGGGTCGATACAGTGTCGAACTCCACCTTTCTTTCTTGCGGCTCCAAGGACTAGCCAATGACTTCAAAATTCAATACATCAGTGTTGTTTGCCTTTTTCTTACTTCCA
AAAGTTTTTCTTCTTCATTTGGGACTGACTATGTGGTTCAAAGCGCCTTGCAAATAGGCGATGAACTTCTCCACACAAAGTACAAGGACAAGTTAGAACCTTCCTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MDEWPKDKPDITSLTNIFQSNYGIAPEEKQLSVSGCNWGEVDLNGNMRTFLVGSKQAFEVSLADVALTILQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFVG
DENRPLVFRDKIMSMADVIAGIEEAVVTFDGIGILTPRGRYSVELHLSFLRLQGLANDFKIQYISVVCLFLTSKSFSSSFGTDYVVQSALQIGDELLHTKYKDKLEPS

Lcy09g018200 (gene) of Sponge gourd (P93075) v1 genome