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Lcy09g019990 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy09g019990
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRibonuclease H
Genome locationChr09:45116879..45117839
RNA-Seq ExpressionLcy09g019990
SyntenyLcy09g019990
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015388012.1 uncharacterized protein LOC107177940 [Citrus sinensis]4.7e-0831.54Show/hide
Query:  PPSNTANKMKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLA-AEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASEVYH
        PPS   +K+K+  DAAV+  S  +  GAV+ N  G ++ A      NF   ++ AE + +  G+ +  +   TNV V +D      +   +    +E++ 
Subjt:  PPSNTANKMKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLA-AEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASEVYH

Query:  WIVNTRDLRGSFESLNFSYVPRHRNNRADHLAKDALLSRRSILWLNDFP
         I   +  R  F+S++F +VPR  N  A  LAK AL S  S+ W ++FP
Subjt:  WIVNTRDLRGSFESLNFSYVPRHRNNRADHLAKDALLSRRSILWLNDFP

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]6.1e-0830Show/hide
Query:  VVEVPPSNTANKMKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASE
        VV+    +++  +K+ TDAA   +S  +S+G ++ + +  L+ A         S L AE++ IL G++       T++ V SDS+ AI++IR E     +
Subjt:  VVEVPPSNTANKMKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASE

Query:  VYHWIVNTRDLRGSFESLNFSYVPRHRNNRADHLAKDALLS-RRSILWLNDFPQWLVSM------SNNAH
          +W++  + L   F  ++FS+  R  N  A  LAK  + S   +  WL +FP WL+ +      SN AH
Subjt:  VYHWIVNTRDLRGSFESLNFSYVPRHRNNRADHLAKDALLS-RRSILWLNDFPQWLVSM------SNNAH

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]2.9e-1032.87Show/hide
Query:  MKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASEVYHWIVNTRDLR
        +KM TDAAV  S   S  G ++  GN +++GAM  + H   + L A++  I  G+ L  R+ +  V V +DS+ A+ +I  +     E   W+ + R   
Subjt:  MKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASEVYHWIVNTRDLR

Query:  GSFESLNFSYVPRHRNNRADHLAKDALLSRRSILWLNDFPQWL
          F+ + F +V R  N  A HL ++ +  R   LW  DFP WL
Subjt:  GSFESLNFSYVPRHRNNRADHLAKDALLSRRSILWLNDFPQWL

XP_024033533.1 uncharacterized protein LOC112095662 [Citrus clementina]2.1e-0830.87Show/hide
Query:  PPSNTANKMKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLA-AEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASEVYH
        PPS   +K+K+  DAAV+  S  +  GAV+ N  G ++ A      NF   ++  E + +  G+ +  +   TNV V +D      +   +    +E++ 
Subjt:  PPSNTANKMKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLA-AEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASEVYH

Query:  WIVNTRDLRGSFESLNFSYVPRHRNNRADHLAKDALLSRRSILWLNDFP
         I   +  R  F+S++F +VPR  N  A  LAK AL S  S++W ++FP
Subjt:  WIVNTRDLRGSFESLNFSYVPRHRNNRADHLAKDALLSRRSILWLNDFP

XP_030510848.1 uncharacterized protein LOC115725456 [Cannabis sativa]2.1e-0828.67Show/hide
Query:  TANKMKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASEVYHWIVNT
        T+ ++K+ TDAAVN ++  + +GA++ N +GD + AM       +     E   +LH ++ L+ +++    + SDS+  I  ++++Q   S+ +  + + 
Subjt:  TANKMKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASEVYHWIVNT

Query:  RDLRGSFESLNFSYVPRHRNNRADHLAKDALLSRRSILWLNDFPQWLVSM
          L  +F  +  S+V R  N  A   AK AL      LWL +FP  L+S+
Subjt:  RDLRGSFESLNFSYVPRHRNNRADHLAKDALLSRRSILWLNDFPQWLVSM

TrEMBL top hitse value%identityAlignment
A0A6J1DX30 uncharacterized protein LOC1110248743.0e-0830Show/hide
Query:  VVEVPPSNTANKMKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASE
        VV+    +++  +K+ TDAA   +S  +S+G ++ + +  L+ A         S L AE++ IL G++       T++ V SDS+ AI++IR E     +
Subjt:  VVEVPPSNTANKMKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASE

Query:  VYHWIVNTRDLRGSFESLNFSYVPRHRNNRADHLAKDALLS-RRSILWLNDFPQWLVSM------SNNAH
          +W++  + L   F  ++FS+  R  N  A  LAK  + S   +  WL +FP WL+ +      SN AH
Subjt:  VYHWIVNTRDLRGSFESLNFSYVPRHRNNRADHLAKDALLS-RRSILWLNDFPQWLVSM------SNNAH

A0A6J1DZK3 uncharacterized protein LOC1110249681.4e-1032.87Show/hide
Query:  MKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASEVYHWIVNTRDLR
        +KM TDAAV  S   S  G ++  GN +++GAM  + H   + L A++  I  G+ L  R+ +  V V +DS+ A+ +I  +     E   W+ + R   
Subjt:  MKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASEVYHWIVNTRDLR

Query:  GSFESLNFSYVPRHRNNRADHLAKDALLSRRSILWLNDFPQWL
          F+ + F +V R  N  A HL ++ +  R   LW  DFP WL
Subjt:  GSFESLNFSYVPRHRNNRADHLAKDALLSRRSILWLNDFPQWL

A0A6P5RZ31 uncharacterized protein LOC1107515798.6e-0833.12Show/hide
Query:  PPSNT------ANKMKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVA
        PPS+T        K+K+  D A + S      GAVV N +GDLMGA+       +S+   E+  I  G++        ++ V +D+ NAI  I +  +  
Subjt:  PPSNT------ANKMKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVA

Query:  SEVYHWIVNTRDLRGSFESLNFSYVPRHRNNRADHLAKDALLSRRSILWLNDFPQWL
              I +   L  +F+SL+F + PR  N  AD LAK AL S    +WL + P WL
Subjt:  SEVYHWIVNTRDLRGSFESLNFSYVPRHRNNRADHLAKDALLSRRSILWLNDFPQWL

A0A803NKW3 Uncharacterized protein1.0e-0828.67Show/hide
Query:  TANKMKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASEVYHWIVNT
        T+ ++K+ TDAAVN ++  + +GA++ N +GD + AM       +     E   +LH ++ L+ +++    + SDS+  I  ++++Q   S+ +  + + 
Subjt:  TANKMKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASEVYHWIVNT

Query:  RDLRGSFESLNFSYVPRHRNNRADHLAKDALLSRRSILWLNDFPQWLVSM
          L  +F  +  S+V R  N  A   AK AL      LWL +FP  L+S+
Subjt:  RDLRGSFESLNFSYVPRHRNNRADHLAKDALLSRRSILWLNDFPQWLVSM

A0A803QGC3 Uncharacterized protein2.5e-0731.82Show/hide
Query:  PPSNTANKMKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASEVYHW
        PP N    +   TDA++   S      AV+ +  G L+ A   +     S L A+  TILHGI L +R  ++NV V SDS   I+ +  E    ++    
Subjt:  PPSNTANKMKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASEVYHW

Query:  IVNTRDLRGSFESLNFSYVPRHRNNRADHLAKDALLSRRSILWLNDFPQWLVSM
        +   + L+ SF+SLNF +  R  N  A+ LA  + L+ +S LW +  P    +M
Subjt:  IVNTRDLRGSFESLNFSYVPRHRNNRADHLAKDALLSRRSILWLNDFPQWLVSM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein1.2e-0430.68Show/hide
Query:  FYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASEVYHWIVNTRDLRGSFESLNFSYVPRHRNNRADHLAKDAL
        F S LAAE   I   +    +++ +++ VLSDS + +  + +   + +E++  +V  R +R  F S++F ++PR  N+ AD  AK +L
Subjt:  FYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASEVYHWIVNTRDLRGSFESLNFSYVPRHRNNRADHLAKDAL

AT1G27870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.3e-0528.37Show/hide
Query:  SSYGAVVVNGNGDLMGAMEFYDHNFYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASEVYHWIVNTRDLRGSFESLNFSYVPRHR
        S  G VV + NG  + A +       ++L +E+Q ++  ++         VC   D+     +I   + V   V++WI +       FES++F+++ RH 
Subjt:  SSYGAVVVNGNGDLMGAMEFYDHNFYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASEVYHWIVNTRDLRGSFESLNFSYVPRHR

Query:  NNRADHLAKDALLSRRSILWLNDFPQWLVSMSNNA-HCKCT
        N  AD LAK  L  +   L+LN F  W+ ++   A HC  T
Subjt:  NNRADHLAKDALLSRRSILWLNDFPQWLVSMSNNA-HCKCT

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.1e-0629.77Show/hide
Query:  NKMKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASEVYHWIVNTRD
        +++ +FTDAA    +    +G V+ N         +    N    L AE   +   ++  Q + IT + + SDS   I  I +E   ++E Y  I +  +
Subjt:  NKMKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSSLAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASEVYHWIVNTRD

Query:  LRGSFESLNFSYVPRHRNNRADHLAKDALLS
        L   F  ++FS+VPR  N  AD LAK +L+S
Subjt:  LRGSFESLNFSYVPRHRNNRADHLAKDALLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAAACTTCCATCGAAAATTAAACTATTCATTTGGAGGGCGTATCACAATTGCTTGCCAACGAATTATTGCTTACGGAAACGAGGCGTTGATACATCTTCCA
CTTGCAAGGCATCACAAGCGGGAGAATTTGAATCTTGAAAACGACGTTGTCGAAGTGCCCCCCTCTAATACCGCAAACAAGATGAAGATGTTTACAGATGCGGCA
GTTAACCTATCCAGTAATCATTCGAGTTATGGTGCCGTTGTCGTTAATGGGAATGGTGATTTGATGGGAGCAATGGAATTTTATGATCATAATTTCTACTCTTCA
TTAGCAGCGGAAGTACAAACAATCTTACATGGTATTCGTTTGTTACAAAGGATGCAGATTACCAATGTTTGTGTATTATCTGATTCCATCAATGCTATTCGAATG
ATCAGAGCTGAACAAGACGTAGCTTCTGAAGTCTATCATTGGATTGTCAACACAAGGGATTTACGTGGAAGCTTTGAGTCTTTAAATTTCTCCTATGTGCCAAGA
CATCGAAACAATAGAGCTGACCATCTTGCTAAAGATGCCCTTTTATCTAGAAGATCTATTTTGTGGTTAAATGATTTTCCACAATGGTTGGTCTCAATGAGCAAT
AATGCTCATTGCAAATGTACTCTCACATGTTCTTGTGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTAAACTTCCATCGAAAATTAAACTATTCATTTGGAGGGCGTATCACAATTGCTTGCCAACGAATTATTGCTTACGGAAACGAGGCGTTGATACATCTTCCA
CTTGCAAGGCATCACAAGCGGGAGAATTTGAATCTTGAAAACGACGTTGTCGAAGTGCCCCCCTCTAATACCGCAAACAAGATGAAGATGTTTACAGATGCGGCA
GTTAACCTATCCAGTAATCATTCGAGTTATGGTGCCGTTGTCGTTAATGGGAATGGTGATTTGATGGGAGCAATGGAATTTTATGATCATAATTTCTACTCTTCA
TTAGCAGCGGAAGTACAAACAATCTTACATGGTATTCGTTTGTTACAAAGGATGCAGATTACCAATGTTTGTGTATTATCTGATTCCATCAATGCTATTCGAATG
ATCAGAGCTGAACAAGACGTAGCTTCTGAAGTCTATCATTGGATTGTCAACACAAGGGATTTACGTGGAAGCTTTGAGTCTTTAAATTTCTCCTATGTGCCAAGA
CATCGAAACAATAGAGCTGACCATCTTGCTAAAGATGCCCTTTTATCTAGAAGATCTATTTTGTGGTTAAATGATTTTCCACAATGGTTGGTCTCAATGAGCAAT
AATGCTCATTGCAAATGTACTCTCACATGTTCTTGTGATTAA
Protein sequenceShow/hide protein sequence
MLNFHRKLNYSFGGRITIACQRIIAYGNEALIHLPLARHHKRENLNLENDVVEVPPSNTANKMKMFTDAAVNLSSNHSSYGAVVVNGNGDLMGAMEFYDHNFYSS
LAAEVQTILHGIRLLQRMQITNVCVLSDSINAIRMIRAEQDVASEVYHWIVNTRDLRGSFESLNFSYVPRHRNNRADHLAKDALLSRRSILWLNDFPQWLVSMSN
NAHCKCTLTCSCD