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Lcy09g021480 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy09g021480
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr09:47046609..47047847
RNA-Seq ExpressionLcy09g021480
SyntenyLcy09g021480
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]7.5e-0940.23Show/hide
Query:  WKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMDGLQSIS-SSSPPVRVETDSLQVARLLNDKDRDET
        WKL+ DASW+E+++ GG+GW+L     E+++AG   I+    ++ LE + I+ GLQ I+  S  P+ +E+DS++V RL+  +D D T
Subjt:  WKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMDGLQSIS-SSSPPVRVETDSLQVARLLNDKDRDET

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.1e-1233.85Show/hide
Query:  WKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMDGLQSI-SSSSPPVRVETDSLQVARLLNDKDRDETKLRVFVLEAKALT
        WKL+ +A+W  D   GG+GW+LR    E++ A  R I+    +++LE +AI +GL++I      P+ +E+DSL+   LL+ + +D+T++   + E   + 
Subjt:  WKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMDGLQSI-SSSSPPVRVETDSLQVARLLNDKDRDETKLRVFVLEAKALT

Query:  SSKNIESIAHVTGIHNVVAHNLAIKASESE
            I S+ H++   N VAH LA +A E++
Subjt:  SSKNIESIAHVTGIHNVVAHNLAIKASESE

XP_022148737.1 uncharacterized protein LOC111017329 [Momordica charantia]1.3e-0830.47Show/hide
Query:  WKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMDGLQS-ISSSSPPVRVETDSLQVARLLNDKDRDETKLRVFVLEAKALT
        WKL+ DA+W+ ++  GGLGW++R    E+  AG + I     +++LE +AI  G+++ +SSSS  + +E++SL+   L+    ++ T++   V + K   
Subjt:  WKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMDGLQS-ISSSSPPVRVETDSLQVARLLNDKDRDETKLRVFVLEAKALT

Query:  SSKNIESIAHVTGIHNVVAHNLAIKASE
            ++   HV    N VA  +A +A++
Subjt:  SSKNIESIAHVTGIHNVVAHNLAIKASE

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]5.2e-1838.62Show/hide
Query:  IWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMDGLQSISSSS--PPVRVETDSLQVARLLNDKDRDETKLRVFVLEAKA
        IW L+ DASW++    GG+GW++R WD ++++AG R+++    V  LE  AI++GL+++++     P+ +ETDS +V  LLN K  D TK    V E   
Subjt:  IWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMDGLQSISSSS--PPVRVETDSLQVARLLNDKDRDETKLRVFVLEAKA

Query:  LTSSKNIESIAHVTGIHNVVAHNLAIKASESEASHSWFGNFPSWV
        L  S  I + A V    N  AH+LA +AS    S  W   FP+W+
Subjt:  LTSSKNIESIAHVTGIHNVVAHNLAIKASESEASHSWFGNFPSWV

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.5e-1232.61Show/hide
Query:  WKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMDGLQSI---------SSSSPPVRVETDSLQVARLLNDKDRDETKLRVF
        WKL+ DA+W  D   GG+GW+LR    E++ A  R I+    +++LE +AI +GL++I              P+ +E+DSL+   LL+ + +D+T++   
Subjt:  WKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMDGLQSI---------SSSSPPVRVETDSLQVARLLNDKDRDETKLRVF

Query:  VLEAKALTSSKNIESIAHVTGIHNVVAHNLAIKASESE
        + E   +     I S+ H++   N VAH+LA +A E++
Subjt:  VLEAKALTSSKNIESIAHVTGIHNVVAHNLAIKASESE

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134125.4e-1333.85Show/hide
Query:  WKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMDGLQSI-SSSSPPVRVETDSLQVARLLNDKDRDETKLRVFVLEAKALT
        WKL+ +A+W  D   GG+GW+LR    E++ A  R I+    +++LE +AI +GL++I      P+ +E+DSL+   LL+ + +D+T++   + E   + 
Subjt:  WKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMDGLQSI-SSSSPPVRVETDSLQVARLLNDKDRDETKLRVFVLEAKALT

Query:  SSKNIESIAHVTGIHNVVAHNLAIKASESE
            I S+ H++   N VAH LA +A E++
Subjt:  SSKNIESIAHVTGIHNVVAHNLAIKASESE

A0A6J1CQG0 uncharacterized protein LOC1110132163.6e-0940.23Show/hide
Query:  WKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMDGLQSIS-SSSPPVRVETDSLQVARLLNDKDRDET
        WKL+ DASW+E+++ GG+GW+L     E+++AG   I+    ++ LE + I+ GLQ I+  S  P+ +E+DS++V RL+  +D D T
Subjt:  WKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMDGLQSIS-SSSPPVRVETDSLQVARLLNDKDRDET

A0A6J1D5W1 uncharacterized protein LOC1110173296.2e-0930.47Show/hide
Query:  WKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMDGLQS-ISSSSPPVRVETDSLQVARLLNDKDRDETKLRVFVLEAKALT
        WKL+ DA+W+ ++  GGLGW++R    E+  AG + I     +++LE +AI  G+++ +SSSS  + +E++SL+   L+    ++ T++   V + K   
Subjt:  WKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMDGLQS-ISSSSPPVRVETDSLQVARLLNDKDRDETKLRVFVLEAKALT

Query:  SSKNIESIAHVTGIHNVVAHNLAIKASE
            ++   HV    N VA  +A +A++
Subjt:  SSKNIESIAHVTGIHNVVAHNLAIKASE

A0A6J1DNV9 uncharacterized protein LOC1110224032.5e-1838.62Show/hide
Query:  IWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMDGLQSISSSS--PPVRVETDSLQVARLLNDKDRDETKLRVFVLEAKA
        IW L+ DASW++    GG+GW++R WD ++++AG R+++    V  LE  AI++GL+++++     P+ +ETDS +V  LLN K  D TK    V E   
Subjt:  IWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMDGLQSISSSS--PPVRVETDSLQVARLLNDKDRDETKLRVFVLEAKA

Query:  LTSSKNIESIAHVTGIHNVVAHNLAIKASESEASHSWFGNFPSWV
        L  S  I + A V    N  AH+LA +AS    S  W   FP+W+
Subjt:  LTSSKNIESIAHVTGIHNVVAHNLAIKASESEASHSWFGNFPSWV

A0A6J1DSV1 uncharacterized protein LOC1110236081.2e-1232.61Show/hide
Query:  WKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMDGLQSI---------SSSSPPVRVETDSLQVARLLNDKDRDETKLRVF
        WKL+ DA+W  D   GG+GW+LR    E++ A  R I+    +++LE +AI +GL++I              P+ +E+DSL+   LL+ + +D+T++   
Subjt:  WKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMDGLQSI---------SSSSPPVRVETDSLQVARLLNDKDRDETKLRVF

Query:  VLEAKALTSSKNIESIAHVTGIHNVVAHNLAIKASESE
        + E   +     I S+ H++   N VAH+LA +A E++
Subjt:  VLEAKALTSSKNIESIAHVTGIHNVVAHNLAIKASESE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGGTGGACCATTTGGAAAACTGGAGATCCGTGGCATATGGAAGCTTAGCTGCGACGCGTCCTGGAACGAGGATAAGCAATGTGGCGGACTTGGATGGGTCCTTCG
ACGTTGGGACGAAGAACTCATGGTCGCTGGGTACCGGTACATCAAGCGTCCATGGCGAGTCAGCTGGCTTGAAACGATTGCAATAATGGATGGCCTTCAATCGATTTCGT
CATCTTCCCCACCGGTGCGTGTTGAAACGGATTCTCTACAAGTGGCGCGGCTACTCAATGACAAAGACAGGGATGAAACAAAGTTGAGGGTGTTTGTTTTGGAAGCAAAA
GCCCTAACCTCTTCTAAGAATATTGAATCTATAGCTCATGTGACTGGAATTCATAACGTTGTGGCCCACAACTTGGCTATAAAGGCTAGTGAAAGTGAAGCATCACATAG
TTGGTTTGGAAATTTTCCATCTTGGGTTCACTCTCCTAATGAGGTGGATATTGGACATGTAAATCATGCCTATGGGGTTCCTGTCCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCGGTGGACCATTTGGAAAACTGGAGATCCGTGGCATATGGAAGCTTAGCTGCGACGCGTCCTGGAACGAGGATAAGCAATGTGGCGGACTTGGATGGGTCCTTCG
ACGTTGGGACGAAGAACTCATGGTCGCTGGGTACCGGTACATCAAGCGTCCATGGCGAGTCAGCTGGCTTGAAACGATTGCAATAATGGATGGCCTTCAATCGATTTCGT
CATCTTCCCCACCGGTGCGTGTTGAAACGGATTCTCTACAAGTGGCGCGGCTACTCAATGACAAAGACAGGGATGAAACAAAGTTGAGGGTGTTTGTTTTGGAAGCAAAA
GCCCTAACCTCTTCTAAGAATATTGAATCTATAGCTCATGTGACTGGAATTCATAACGTTGTGGCCCACAACTTGGCTATAAAGGCTAGTGAAAGTGAAGCATCACATAG
TTGGTTTGGAAATTTTCCATCTTGGGTTCACTCTCCTAATGAGGTGGATATTGGACATGTAAATCATGCCTATGGGGTTCCTGTCCCATAG
Protein sequenceShow/hide protein sequence
MGGGPFGKLEIRGIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMDGLQSISSSSPPVRVETDSLQVARLLNDKDRDETKLRVFVLEAK
ALTSSKNIESIAHVTGIHNVVAHNLAIKASESEASHSWFGNFPSWVHSPNEVDIGHVNHAYGVPVP