; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy10g001040 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy10g001040
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionSerine/arginine-rich splicing factor SR45a-like
Genome locationChr10:1305194..1306494
RNA-Seq ExpressionLcy10g001040
SyntenyLcy10g001040
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7036969.1 Serine/arginine-rich splicing factor SR45a [Cucurbita argyrosperma subsp. argyrosperma]3.8e-5589.47Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEKHFSAEGTVLDVHLV DPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRIITVE-----------KFFWQQ
        KYLNRSVLEGR+ITVE           KFFWQQ
Subjt:  KYLNRSVLEGRIITVE-----------KFFWQQ

XP_022964743.1 serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita moschata]3.8e-5598.29Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

XP_022964744.1 serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita moschata]3.8e-5598.29Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

XP_022970546.1 serine/arginine-rich splicing factor SR45a-like isoform X4 [Cucurbita maxima]4.5e-5697.48Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSN+EAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRIITVEKFF
        KYLNRSVLEGRIITVEKFF
Subjt:  KYLNRSVLEGRIITVEKFF

XP_023522126.1 serine/arginine-rich splicing factor SR45a-like [Cucurbita pepo subsp. pepo]3.8e-5598.29Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

TrEMBL top hitse value%identityAlignment
A0A6J1HLT5 serine/arginine-rich splicing factor SR45a-like isoform X11.8e-5598.29Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

A0A6J1HP51 serine/arginine-rich splicing factor SR45a-like isoform X21.8e-5598.29Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

A0A6J1I0W1 serine/arginine-rich splicing factor SR45a-like isoform X42.2e-5697.48Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSN+EAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRIITVEKFF
        KYLNRSVLEGRIITVEKFF
Subjt:  KYLNRSVLEGRIITVEKFF

A0A6J1I361 serine/arginine-rich splicing factor SR45a-like isoform X25.4e-5597.44Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSN+EAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

A0A6J1I474 serine/arginine-rich splicing factor SR45a-like isoform X15.4e-5597.44Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSN+EAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRIITVEK
        KYLNRSVLEGRIITVEK
Subjt:  KYLNRSVLEGRIITVEK

SwissProt top hitse value%identityAlignment
Q10422 Uncharacterized RNA-binding protein C25G10.011.6e-1136.73Show/hide
Query:  SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK
        + S +  +   +S     EN GN+L+V+G++ R+   EL++ FS  GTV  V ++ +P T+ SRGFGF++ S+ +EA   I  LN     GR++ V+K
Subjt:  SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK

Q14151 Scaffold attachment factor B22.1e-1142.86Show/hide
Query:  GNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK
        G NL+V+GLS      +L+  FS  G V+   +V +  +  +R +GF+TMS++DEA +CI +L+R+ L GR+I+VEK
Subjt:  GNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK

Q39061 RNA-binding protein CP33, chloroplastic6.6e-1045.83Show/hide
Query:  LYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITV
        LYV  L   IT  EL + F   GTV+DV +V D  T  SRGFGF+TM S +EA+  ++  N S + GR + V
Subjt:  LYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITV

Q80YR5 Scaffold attachment factor B29.2e-1242.86Show/hide
Query:  GNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK
        G NL+V+GLS      +L+  FS  G V+   +V +  +  +R +GF+TMS++DEA +CI +L+R+ L GR+I+VEK
Subjt:  GNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEK

Q84TH4 Serine/arginine-rich splicing factor SR45a3.5e-3569.17Show/hide
Query:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAE
        MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A 
Subjt:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAE

Query:  RCIKYLNRSVLEGRIITVEK
        RCI+ L+ SVL+GR+ITVEK
Subjt:  RCIKYLNRSVLEGRIITVEK

Arabidopsis top hitse value%identityAlignment
AT1G07350.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.5e-3669.17Show/hide
Query:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAE
        MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A 
Subjt:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAE

Query:  RCIKYLNRSVLEGRIITVEK
        RCI+ L+ SVL+GR+ITVEK
Subjt:  RCIKYLNRSVLEGRIITVEK

AT1G07350.2 RNA-binding (RRM/RBD/RNP motifs) family protein5.7e-4168.99Show/hide
Query:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAE
        MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A 
Subjt:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAE

Query:  RCIKYLNRSVLEGRIITVEKFFWQQVSCV
        RCI+ L+ SVL+GR+ITVEKF WQQV C+
Subjt:  RCIKYLNRSVLEGRIITVEKFFWQQVSCV

AT4G35785.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.6e-3063.79Show/hide
Query:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIK
        S SR    SRS S  R VS S SR RSRSRS  S+VENPG  LYVTGLS R+T ++LE HF+ EG V    LV +P TR SRGF F+TMSS  +AERCIK
Subjt:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIK

Query:  YLNRSVLEGRIITVEK
        YLN+SVLEGR ITVE+
Subjt:  YLNRSVLEGRIITVEK

AT4G35785.2 RNA-binding (RRM/RBD/RNP motifs) family protein3.8e-2963.25Show/hide
Query:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T ++LE HF+ EG V    LV +P TR SRGF F+TMSS  +AERCI
Subjt:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRIITVEK
        KYLN+SVLEGR ITVE+
Subjt:  KYLNRSVLEGRIITVEK

AT4G35785.3 RNA-binding (RRM/RBD/RNP motifs) family protein2.9e-2960.48Show/hide
Query:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T ++LE HF+ EG V    LV +P TR SRGF F+TMSS  +AERCI
Subjt:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRIITVEKFFWQQVS
        KYLN+SVLEGR ITVE+    Q +
Subjt:  KYLNRSVLEGRIITVEKFFWQQVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTCGTACTCCAGAAGGTCTAGGTACTCCCGGTCTCCTTCATACAAACGTTCAGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGAGCCCTTCAAGTGA
CGTCGAAAACCCTGGTAACAATTTGTACGTCACTGGTTTGTCACCTAGAATAACGAGAAGAGAACTCGAGAAGCATTTTTCTGCTGAGGGAACAGTGCTAGATGTTCATC
TTGTGGCTGATCCATGGACTAGAGAATCTCGTGGATTTGGATTTATTACCATGTCTAGTAATGATGAGGCTGAACGTTGCATCAAATATCTGAATCGATCTGTACTTGAA
GGTCGAATAATTACCGTGGAGAAGTTTTTTTGGCAGCAGGTTAGCTGTGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGTCGTACTCCAGAAGGTCTAGGTACTCCCGGTCTCCTTCATACAAACGTTCAGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGAGCCCTTCAAGTGA
CGTCGAAAACCCTGGTAACAATTTGTACGTCACTGGTTTGTCACCTAGAATAACGAGAAGAGAACTCGAGAAGCATTTTTCTGCTGAGGGAACAGTGCTAGATGTTCATC
TTGTGGCTGATCCATGGACTAGAGAATCTCGTGGATTTGGATTTATTACCATGTCTAGTAATGATGAGGCTGAACGTTGCATCAAATATCTGAATCGATCTGTACTTGAA
GGTCGAATAATTACCGTGGAGAAGTTTTTTTGGCAGCAGGTTAGCTGTGTGTAG
Protein sequenceShow/hide protein sequence
MMSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLE
GRIITVEKFFWQQVSCV