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Lcy10g002000 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy10g002000
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationChr10:2574714..2590857
RNA-Seq ExpressionLcy10g002000
SyntenyLcy10g002000
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039111.1 uncharacterized protein E6C27_scaffold84G002140 [Cucumis melo var. makuwa]2.3e-2163Show/hide
Query:  MSSTKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPIQELMMRVENLE--SKATRPSSYERGDSSSGSAPLMEEPV
        MSS+    K   +RLVEIEEQ+LYL EVPD+IR++ESR+DEIS KAD +DAVAGRV+G+PIQEL+ RV+ LE  + A R  +YERG+SSSG A  MEE V
Subjt:  MSSTKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPIQELMMRVENLE--SKATRPSSYERGDSSSGSAPLMEEPV
KAA0061346.1 uncharacterized protein E6C27_scaffold749G00290 [Cucumis melo var. makuwa]3.1e-2163Show/hide
Query:  MSSTKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPIQELMMRVENLE--SKATRPSSYERGDSSSGSAPLMEEPV
        MSS+    K   +RLVEIEEQ+LYL EVPD+IR++ESR+DEIS KAD +DAVAGRV+G+PIQEL+ RV+ LE  + A R  +YERG+SSSG A  MEE V
Subjt:  MSSTKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPIQELMMRVENLE--SKATRPSSYERGDSSSGSAPLMEEPV
XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]4.6e-2564.36Show/hide
Query:  MSSTKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPSSYERGDSSSGSAPLMEEPVRS
        MS+TKQL+K+HV+RLVEIEEQLLYLREVPD +R +E+R+DE S K  ++DAV  R+DG+PIQ++ MRVE LESKATRP S+ERGDSS+   P  +  VR 
Subjt:  MSSTKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPSSYERGDSSSGSAPLMEEPVRS

Query:  G
        G
Subjt:  G
XP_022154605.1 uncharacterized protein LOC111021829 [Momordica charantia]6.0e-2564.36Show/hide
Query:  MSSTKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPSSYERGDSSSGSAPLMEEPVRS
        MS+TKQL+K+HV+RLVEIEEQLLYLREVPD++R +E+R+DE S K  ++DAV  RVDG+PIQ++ MRVE  ESKATRP S+ERGDSS+   P  +  VR 
Subjt:  MSSTKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPSSYERGDSSSGSAPLMEEPVRS

Query:  G
        G
Subjt:  G
XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]1.3e-2464.29Show/hide
Query:  MSSTKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPSSYERGDSSSGSAPLMEEPV
        MS+TKQL K+H++RLVEIEE+LL+LRE+PD +R+VESRLDEISTKAD +D V  R+DG+ I+ELM+RVE LE K  R  + ERG+SSS S   MEE V
Subjt:  MSSTKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPSSYERGDSSSGSAPLMEEPV
TrEMBL top hitse value%identityAlignment
A0A5A7TBW6 Retrotrans_gag domain-containing protein1.1e-2163Show/hide
Query:  MSSTKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPIQELMMRVENLE--SKATRPSSYERGDSSSGSAPLMEEPV
        MSS+    K   +RLVEIEEQ+LYL EVPD+IR++ESR+DEIS KAD +DAVAGRV+G+PIQEL+ RV+ LE  + A R  +YERG+SSSG A  MEE V
Subjt:  MSSTKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPIQELMMRVENLE--SKATRPSSYERGDSSSGSAPLMEEPV
A0A5A7V4C9 Uncharacterized protein1.5e-2163Show/hide
Query:  MSSTKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPIQELMMRVENLE--SKATRPSSYERGDSSSGSAPLMEEPV
        MSS+    K   +RLVEIEEQ+LYL EVPD+IR++ESR+DEIS KAD +DAVAGRV+G+PIQEL+ RV+ LE  + A R  +YERG+SSSG A  MEE V
Subjt:  MSSTKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPIQELMMRVENLE--SKATRPSSYERGDSSSGSAPLMEEPV
A0A6J1D906 Reverse transcriptase2.2e-2564.36Show/hide
Query:  MSSTKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPSSYERGDSSSGSAPLMEEPVRS
        MS+TKQL+K+HV+RLVEIEEQLLYLREVPD +R +E+R+DE S K  ++DAV  R+DG+PIQ++ MRVE LESKATRP S+ERGDSS+   P  +  VR 
Subjt:  MSSTKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPSSYERGDSSSGSAPLMEEPVRS

Query:  G
        G
Subjt:  G
A0A6J1DK29 uncharacterized protein LOC1110218292.9e-2564.36Show/hide
Query:  MSSTKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPSSYERGDSSSGSAPLMEEPVRS
        MS+TKQL+K+HV+RLVEIEEQLLYLREVPD++R +E+R+DE S K  ++DAV  RVDG+PIQ++ MRVE  ESKATRP S+ERGDSS+   P  +  VR 
Subjt:  MSSTKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPSSYERGDSSSGSAPLMEEPVRS

Query:  G
        G
Subjt:  G
A0A6J1DLQ6 uncharacterized protein LOC1110223206.4e-2564.29Show/hide
Query:  MSSTKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPSSYERGDSSSGSAPLMEEPV
        MS+TKQL K+H++RLVEIEE+LL+LRE+PD +R+VESRLDEISTKAD +D V  R+DG+ I+ELM+RVE LE K  R  + ERG+SSS S   MEE V
Subjt:  MSSTKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPSSYERGDSSSGSAPLMEEPV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCGACCAAGCAGTTGGCGAAGACCCATGTGGAACGTTTAGTTGAGATCGAAGAGCAGTTGCTCTACTTGAGGGAAGTCCCCGATGCTATTCGGTTTGTGGAATC
TCGGCTGGATGAGATTTCGACCAAGGCCGACAAAGTTGATGCGGTAGCTGGCCGCGTGGATGGAATGCCCATCCAAGAACTGATGATGAGGGTTGAGAACCTTGAAAGTA
AAGCTACTCGACCTAGTAGCTACGAGCGTGGTGACAGCTCGTCGGGCTCTGCTCCCCTGATGGAGGAGCCGGTTCGTTCCGGTCTGGGGTTAGGAGCGCGGTTCACGGCG
GTCTGGGCGGTTCTTGACCGGTTCCCGAGGGTTCAGGCGCGAAACAAACCCAAAACAAACCCAAGTTTCGATAAGGTTACCAACTATCTTTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTCGACCAAGCAGTTGGCGAAGACCCATGTGGAACGTTTAGTTGAGATCGAAGAGCAGTTGCTCTACTTGAGGGAAGTCCCCGATGCTATTCGGTTTGTGGAATC
TCGGCTGGATGAGATTTCGACCAAGGCCGACAAAGTTGATGCGGTAGCTGGCCGCGTGGATGGAATGCCCATCCAAGAACTGATGATGAGGGTTGAGAACCTTGAAAGTA
AAGCTACTCGACCTAGTAGCTACGAGCGTGGTGACAGCTCGTCGGGCTCTGCTCCCCTGATGGAGGAGCCGGTTCGTTCCGGTCTGGGGTTAGGAGCGCGGTTCACGGCG
GTCTGGGCGGTTCTTGACCGGTTCCCGAGGGTTCAGGCGCGAAACAAACCCAAAACAAACCCAAGTTTCGATAAGGTTACCAACTATCTTTCATAA
Protein sequenceShow/hide protein sequence
MSSTKQLAKTHVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPSSYERGDSSSGSAPLMEEPVRSGLGLGARFTA
VWAVLDRFPRVQARNKPKTNPSFDKVTNYLS