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Lcy10g012500 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy10g012500
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr10:40803607..40805941
RNA-Seq ExpressionLcy10g012500
SyntenyLcy10g012500
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONI12089.1 hypothetical protein PRUPE_4G143500 [Prunus persica]7.8e-1033.1Show/hide
Query:  LHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYV-NEEIQCHTSIATTIWDIQEACK
        L+ DAAF+ E    GIG V+R+  G +    +L     +    AE++A L G++ AR+   S + I SDS  V   V  +E +   S    I DI+ + +
Subjt:  LHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYV-NEEIQCHTSIATTIWDIQEACK

Query:  FFETVRFKYISRRFNSFAHKLARVGKSCSTPALWLQHYPQWMVSL
         FE V   Y  R  N  AH LA+   +C+T   W++  P W+ S+
Subjt:  FFETVRFKYISRRFNSFAHKLARVGKSCSTPALWLQHYPQWMVSL

XP_018821989.1 uncharacterized protein LOC108992010 [Juglans regia]7.8e-1031.88Show/hide
Query:  LHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKF
        L+ D AF  +G   GIG V+RD  G + +  ++R        E E +A+L+GL+L   L +  L+I SDSL V    +   Q   ++   I ++++    
Subjt:  LHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKF

Query:  FETVRFKYISRRFNSFAHKLARVGKSCSTPALWLQHYP
        F+T    +++R  N   H LA++G S S  +LW   YP
Subjt:  FETVRFKYISRRFNSFAHKLARVGKSCSTPALWLQHYP

XP_024157591.1 uncharacterized protein LOC112165325 [Rosa chinensis]1.0e-0929.33Show/hide
Query:  LHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKF
        ++ D A  G+   CG+G+V RD  GNLK   ++  +G   P   E +A+L GLR A  +  + + I  D+L+V   + E  + +++    I +++   + 
Subjt:  LHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKF

Query:  FETVRFKYISRRFNSFAHKLARVGKSCSTPALWLQHYPQWM---VSLSLQ
        F +    ++ R  N  AH+LA+     S P L L+  P W+   VS+  Q
Subjt:  FETVRFKYISRRFNSFAHKLARVGKSCSTPALWLQHYPQWM---VSLSLQ

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]6.0e-1036.3Show/hide
Query:  DAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFET
        DAAF  +    G+G V+RD  G +      +++       AE  AVL GL+LAR  +VS L I SD L V + VN      + I  TI  IQ   K F+ 
Subjt:  DAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFET

Query:  VRFKYISRRFNSFAHKLARVGKSCSTPALWLQHYP
        V   +I R  N+ AH LA++     +P +WL + P
Subjt:  VRFKYISRRFNSFAHKLARVGKSCSTPALWLQHYP

XP_042962749.1 uncharacterized protein LOC122297028 [Carya illinoinensis]1.0e-0926.18Show/hide
Query:  SYLDDYRKANPRGAVLQQSKEDVSAII----SGSEDIILHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVS
        S   D++KA     +L+ S  D   ++         + ++ D A  GE ++ GIGLV+RD  GN+ +  S      +     E  AVL+GL+   +  ++
Subjt:  SYLDDYRKANPRGAVLQQSKEDVSAII----SGSEDIILHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVS

Query:  RLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFETVRFKYISRRFNSFAHKLARVGKSCSTPALWLQHYPQWMVSLSLQERFLFV
        +L + SD L +   +N   +C +  A  I +I+    +F  + F ++ R+ N+ AH LAR  ++    ++W    P  +   +  +R +FV
Subjt:  RLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFETVRFKYISRRFNSFAHKLARVGKSCSTPALWLQHYPQWMVSLSLQERFLFV

TrEMBL top hitse value%identityAlignment
A0A251PKK0 RNase H domain-containing protein3.8e-1033.1Show/hide
Query:  LHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYV-NEEIQCHTSIATTIWDIQEACK
        L+ DAAF+ E    GIG V+R+  G +    +L     +    AE++A L G++ AR+   S + I SDS  V   V  +E +   S    I DI+ + +
Subjt:  LHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYV-NEEIQCHTSIATTIWDIQEACK

Query:  FFETVRFKYISRRFNSFAHKLARVGKSCSTPALWLQHYPQWMVSL
         FE V   Y  R  N  AH LA+   +C+T   W++  P W+ S+
Subjt:  FFETVRFKYISRRFNSFAHKLARVGKSCSTPALWLQHYPQWMVSL

A0A2I4ERH4 uncharacterized protein LOC1089920103.8e-1031.88Show/hide
Query:  LHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKF
        L+ D AF  +G   GIG V+RD  G + +  ++R        E E +A+L+GL+L   L +  L+I SDSL V    +   Q   ++   I ++++    
Subjt:  LHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKF

Query:  FETVRFKYISRRFNSFAHKLARVGKSCSTPALWLQHYP
        F+T    +++R  N   H LA++G S S  +LW   YP
Subjt:  FETVRFKYISRRFNSFAHKLARVGKSCSTPALWLQHYP

A0A2N9GM07 Reverse transcriptase domain-containing protein2.9e-1031.13Show/hide
Query:  LHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKF
        +++D A    G   GIG+V+RD  G+    QS R++G       E +A+ +G  LAREL +  + + SD+ N+   +N E     +I   I +I    + 
Subjt:  LHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKF

Query:  FETVRFKYISRRFNSFAHKLARVGKSCSTPALWLQHYPQWMVSLSLQERFL
        F T + +Y  R  N  AH LA+  K   T  LW    P ++     +ER L
Subjt:  FETVRFKYISRRFNSFAHKLARVGKSCSTPALWLQHYPQWMVSLSLQERFL

A0A2P6QJ46 Putative ribonuclease H-like domain-containing protein9.3e-0929.46Show/hide
Query:  CGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFETVRFKYISRRF
        CG+G+V RD +G LK   ++  +G   P   E +A+L GLR A  +   RL I  D+L++   +  E    +     + +++   + FE     ++ R  
Subjt:  CGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFETVRFKYISRRF

Query:  NSFAHKLARVGKSCSTPALWLQHYPQWMV
        N  AH+LA+     S P L L+  P W++
Subjt:  NSFAHKLARVGKSCSTPALWLQHYPQWMV

A0A7N2MTJ9 Uncharacterized protein6.4e-1029.11Show/hide
Query:  ASYLDDYRKANPRGAVLQQSKEDVSAIISGSEDII-LHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRL
        + Y+++Y+ A           + V + I  SE+I  ++ D A   + +  G+G+++RD  G L+   S + +     +EAE +A  QGL  AR++ +   
Subjt:  ASYLDDYRKANPRGAVLQQSKEDVSAIISGSEDII-LHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRL

Query:  TILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFETVRFKYISRRFNSFAHKLAR
         I  DSL +   + E     +S+A  +  IQE C+ F  V F ++ R+ N  AH LA+
Subjt:  TILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFETVRFKYISRRFNSFAHKLAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.3e-0630.07Show/hide
Query:  DAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFET
        DA F  +        ++R+  G  +   SL+    S PLEAE  A+L  L+        R+ +  D   +T  V+     H  +A  + DI+   K F  
Subjt:  DAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFET

Query:  VRFKYISRRFNSFAHKLARVG--------KSCSTPALWL-QHY
        V+F ++ R  N  AH+LA++G         SC+ P +WL QHY
Subjt:  VRFKYISRRFNSFAHKLARVG--------KSCSTPALWL-QHY

AT3G09510.1 Ribonuclease H-like superfamily protein1.1e-0628.37Show/hide
Query:  DAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFET
        DA F  +  +   G ++R+ YG      S++    S PLEAE  A+L  L+       +++ +  D   +   +N  I  H+S+A  + DI      F +
Subjt:  DAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFET

Query:  VRFKYISRRFNSFAHKLARVGKSCST-------PALWLQHY
        ++F +I R+ N  AH LA+ G + ST         +WL  Y
Subjt:  VRFKYISRRFNSFAHKLARVGKSCST-------PALWLQHY

AT4G29090.1 Ribonuclease H-like superfamily protein3.3e-0628.1Show/hide
Query:  HSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFF
        ++DA +  + E+CGIG V+R+  G +K + +         LEAE+ A+   +        + +   SDS  +   +N + +   S+  TI D+Q     F
Subjt:  HSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILSDSLNVTRYVNEEIQCHTSIATTIWDIQEACKFF

Query:  ETVRFKYISRRFNSFAHKLAR
          V+F +I R  N+ A ++AR
Subjt:  ETVRFKYISRRFNSFAHKLAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCAGGCACGCATCTTTAGCCTCATACCTAGATGATTATAGGAAGGCGAATCCGAGAGGAGCAGTGTTGCAACAGTCGAAGGAAGACGTTTCTGCAATCATCTCAGG
TAGCGAGGACATCATTTTACACTCTGACGCGGCGTTCATGGGAGAGGGGGAACAATGTGGGATTGGTTTAGTGATGCGTGACAGGTATGGAAATCTTAAGGTTGTTCAGT
CTTTAAGATCGGTGGGCTGCTCATATCCGTTGGAAGCAGAAGTGGTTGCGGTGTTGCAAGGTCTTCGTCTGGCTAGGGAGTTGAATGTGTCTCGATTGACGATCTTATCA
GACTCGTTGAATGTAACCAGGTATGTTAATGAGGAGATCCAATGCCATACTAGTATTGCAACGACCATCTGGGATATTCAAGAAGCCTGCAAGTTTTTTGAGACGGTTCG
TTTTAAATATATTAGTCGTAGGTTTAATAGTTTTGCTCATAAACTGGCCCGTGTGGGCAAATCATGTTCGACGCCAGCTTTGTGGCTACAACACTATCCTCAATGGATGG
TTAGTTTATCGCTCCAAGAGCGATTTCTGTTCGTATCCCATCGGGATTTGTTTGTTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCAGGCACGCATCTTTAGCCTCATACCTAGATGATTATAGGAAGGCGAATCCGAGAGGAGCAGTGTTGCAACAGTCGAAGGAAGACGTTTCTGCAATCATCTCAGG
TAGCGAGGACATCATTTTACACTCTGACGCGGCGTTCATGGGAGAGGGGGAACAATGTGGGATTGGTTTAGTGATGCGTGACAGGTATGGAAATCTTAAGGTTGTTCAGT
CTTTAAGATCGGTGGGCTGCTCATATCCGTTGGAAGCAGAAGTGGTTGCGGTGTTGCAAGGTCTTCGTCTGGCTAGGGAGTTGAATGTGTCTCGATTGACGATCTTATCA
GACTCGTTGAATGTAACCAGGTATGTTAATGAGGAGATCCAATGCCATACTAGTATTGCAACGACCATCTGGGATATTCAAGAAGCCTGCAAGTTTTTTGAGACGGTTCG
TTTTAAATATATTAGTCGTAGGTTTAATAGTTTTGCTCATAAACTGGCCCGTGTGGGCAAATCATGTTCGACGCCAGCTTTGTGGCTACAACACTATCCTCAATGGATGG
TTAGTTTATCGCTCCAAGAGCGATTTCTGTTCGTATCCCATCGGGATTTGTTTGTTTCTTAA
Protein sequenceShow/hide protein sequence
MFRHASLASYLDDYRKANPRGAVLQQSKEDVSAIISGSEDIILHSDAAFMGEGEQCGIGLVMRDRYGNLKVVQSLRSVGCSYPLEAEVVAVLQGLRLARELNVSRLTILS
DSLNVTRYVNEEIQCHTSIATTIWDIQEACKFFETVRFKYISRRFNSFAHKLARVGKSCSTPALWLQHYPQWMVSLSLQERFLFVSHRDLFVS