; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy11g014100 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy11g014100
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionDNA-directed RNA polymerase subunit beta'
Genome locationChr11:26711675..26713736
RNA-Seq ExpressionLcy11g014100
SyntenyLcy11g014100
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000722 - RNA polymerase, alpha subunit
IPR006592 - RNA polymerase, N-terminal
IPR042102 - RNA polymerase Rpb1, domain 3 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHM88912.1 RNA polymerase beta [Lagenaria siceraria]3.5e-9198.25Show/hide
Query:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
        GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
Subjt:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF

Query:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP
        NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGN +G+CANRYNP
Subjt:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP

AHM88970.1 RNA polymerase beta [Lagenaria siceraria]3.5e-9198.25Show/hide
Query:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
        GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
Subjt:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF

Query:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP
        NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGN +G+CANRYNP
Subjt:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP

ASY96794.1 RNA polymerase beta' subunit [Cucumis melo var. momordica]3.5e-9198.25Show/hide
Query:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
        GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
Subjt:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF

Query:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP
        NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGN +G+CANRYNP
Subjt:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP

YP_009560826.1 RpoC1 [Trichosanthes kirilowii]3.5e-9198.25Show/hide
Query:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
        GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
Subjt:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF

Query:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP
        NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGN +G+CANRYNP
Subjt:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP

YP_009753080.1 RNA polymerase beta' subunit [Corallocarpus boehmii]2.0e-9198.25Show/hide
Query:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
        GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
Subjt:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF

Query:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP
        NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGN +G+CANRYNP
Subjt:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP

TrEMBL top hitse value%identityAlignment
A0A1X9Q1T5 DNA-directed RNA polymerase subunit beta'1.7e-9198.25Show/hide
Query:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
        GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
Subjt:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF

Query:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP
        NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGN +G+CANRYNP
Subjt:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP

A0A218KG20 DNA-directed RNA polymerase subunit beta'1.7e-9198.25Show/hide
Query:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
        GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
Subjt:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF

Query:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP
        NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGN +G+CANRYNP
Subjt:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP

A0A249RZJ2 DNA-directed RNA polymerase subunit beta'1.7e-9198.25Show/hide
Query:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
        GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
Subjt:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF

Query:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP
        NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGN +G+CANRYNP
Subjt:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP

A0A6H0EUY2 DNA-directed RNA polymerase subunit beta'9.8e-9298.25Show/hide
Query:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
        GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
Subjt:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF

Query:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP
        NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGN +G+CANRYNP
Subjt:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP

A0A6M3S6B8 DNA-directed RNA polymerase subunit beta'1.7e-9198.25Show/hide
Query:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
        GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
Subjt:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF

Query:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP
        NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGN +G+CANRYNP
Subjt:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP

SwissProt top hitse value%identityAlignment
A0A326 DNA-directed RNA polymerase subunit beta'1.6e-9192.57Show/hide
Query:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
        GPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAK+KIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGF
Subjt:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF

Query:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNPYFAR
        NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQDML+GLYVLTSGN +G+C NRYNP+  R
Subjt:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNPYFAR

A0A326 DNA-directed RNA polymerase subunit beta'3.3e-0442.19Show/hide
Query:  MREKLADLDLRLIIDYSLVAWKELGEERLGGPSLSLHRCGLPREIAIELFQTFLIRGL-IRQHF
        +RE+LADLDLR+I++ SLV WKELGEE   G      + G  ++        FL+R + + +HF
Subjt:  MREKLADLDLRLIIDYSLVAWKELGEERLGGPSLSLHRCGLPREIAIELFQTFLIRGL-IRQHF

A6MM27 DNA-directed RNA polymerase subunit beta'2.5e-9296.49Show/hide
Query:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
        GPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
Subjt:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF

Query:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP
        NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSGN +G+CANRYNP
Subjt:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP

A6MM27 DNA-directed RNA polymerase subunit beta'9.7e-0442.19Show/hide
Query:  MREKLADLDLRLIIDYSLVAWKELGEERLGGPSLSLHRCGLPREIAIELFQTFLIRGL-IRQHF
        +RE+LAD DLR+I DYSL  WKELGEE   G      + G  ++        FL+R + + +HF
Subjt:  MREKLADLDLRLIIDYSLVAWKELGEERLGGPSLSLHRCGLPREIAIELFQTFLIRGL-IRQHF

Q09X26 DNA-directed RNA polymerase subunit beta'2.1e-9194.74Show/hide
Query:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
        GPSLSLHRCGLPREIAIELFQTF+IRGLIRQHFASNIGVAKSKIREKEP+VWEILQ+VMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICLHPLVCKGF
Subjt:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF

Query:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP
        NADFDGDQMAVHVPLSLEAQAEARLLMFSH NLLS AIGDPISVPTQDMLIGLYVLTSGN +G+CANRYNP
Subjt:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP

Q09X26 DNA-directed RNA polymerase subunit beta'2.3e-0582.14Show/hide
Query:  MREKLADLDLRLIIDYSLVAWKELGEER
        +RE+LADLDL +IIDYSLV WKELGEER
Subjt:  MREKLADLDLRLIIDYSLVAWKELGEER

Q4VZP2 DNA-directed RNA polymerase subunit beta'4.5e-9498.25Show/hide
Query:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
        GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
Subjt:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF

Query:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP
        NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGN +G+CANRYNP
Subjt:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP

Q8S8Y0 DNA-directed RNA polymerase subunit beta'2.1e-9194.74Show/hide
Query:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
        GPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGF
Subjt:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF

Query:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP
        NADFDGDQMAVHVPLSLEAQ EARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSGN +G+C NRYNP
Subjt:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP

Q8S8Y0 DNA-directed RNA polymerase subunit beta'1.7e-0374.07Show/hide
Query:  MREKLADLDLRLIIDYSLVAWKELGEE
        +RE+LADLDLR+II+ SLV W+ELGEE
Subjt:  MREKLADLDLRLIIDYSLVAWKELGEE

Arabidopsis top hitse value%identityAlignment
AT2G40030.1 nuclear RNA polymerase D1B5.8e-1237.62Show/hide
Query:  QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYV
        + VM G  V +NR PT H+  +QA +  + E   + ++PL+C   +ADFDGD + +  P SL A+AE   L      LLSS  G  I     D L+ L V
Subjt:  QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYV

Query:  L
        +
Subjt:  L

AT4G35800.1 RNA polymerase II large subunit8.4e-1133.02Show/hide
Query:  WEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLI
        +++ + +  G  VL NR P+LH++ I   +  ++      L+  V   +NADFDGD+M +HVP S E +AE   LM     ++S     P+    QD L+
Subjt:  WEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLI

Query:  GLYVLT
        G   +T
Subjt:  GLYVLT

AT5G60040.1 nuclear RNA polymerase C14.3e-1533.88Show/hide
Query:  IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS
        +G  + +I ++  I   + + + +G  VL NR P+LHR+ I   +  ++  R +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM    NL + 
Subjt:  IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS

Query:  AIGDPISVPTQDMLIGLYVLT
          G+ +   TQD L   +++T
Subjt:  AIGDPISVPTQDMLIGLYVLT

AT5G60040.2 nuclear RNA polymerase C14.3e-1533.88Show/hide
Query:  IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS
        +G  + +I ++  I   + + + +G  VL NR P+LHR+ I   +  ++  R +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM    NL + 
Subjt:  IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS

Query:  AIGDPISVPTQDMLIGLYVLT
          G+ +   TQD L   +++T
Subjt:  AIGDPISVPTQDMLIGLYVLT

ATCG00180.1 DNA-directed RNA polymerase family protein3.7e-9193.57Show/hide
Query:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF
        GPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKS+IREK+PIVWEILQEVMQGHPVLLNRAPTLHRLGIQ+FQPILVEGR ICLHPLVCKGF
Subjt:  GPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGF

Query:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP
        NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSG  +G+CANRYNP
Subjt:  NADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNP

ATCG00180.1 DNA-directed RNA polymerase family protein9.0e-0574.07Show/hide
Query:  MREKLADLDLRLIIDYSLVAWKELGEE
        +RE+LADLDLR+II+ SLV WK+LGEE
Subjt:  MREKLADLDLRLIIDYSLVAWKELGEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGAAAAATTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCGTTGGTAGCATGGAAAGAATTAGGGGAAGAAAGACTCGGGGGTCCCTCACTTTCATTACA
TCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAA
TTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTC
CAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTT
GGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGGCTCT
ATGTATTAACGAGCGGGAATTGCCAAGGTGTTTGTGCAAACCGGTATAATCCATATTTTGCACGTGTGATACATGTTCCCTCTATTTCTCCAAGTAAAGCTTTTCGCATC
GCAATGCCTATAGTATGGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGAGAAAAATTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCGTTGGTAGCATGGAAAGAATTAGGGGAAGAAAGACTCGGGGGTCCCTCACTTTCATTACA
TCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAA
TTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTC
CAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTT
GGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGGCTCT
ATGTATTAACGAGCGGGAATTGCCAAGGTGTTTGTGCAAACCGGTATAATCCATATTTTGCACGTGTGATACATGTTCCCTCTATTTCTCCAAGTAAAGCTTTTCGCATC
GCAATGCCTATAGTATGGGCTTGA
Protein sequenceShow/hide protein sequence
MREKLADLDLRLIIDYSLVAWKELGEERLGGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAF
QPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNCQGVCANRYNPYFARVIHVPSISPSKAFRI
AMPIVWA