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Lcy12g001070 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy12g001070
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr12:1564310..1564765
RNA-Seq ExpressionLcy12g001070
SyntenyLcy12g001070
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006471930.1 uncharacterized protein LOC102617744 [Citrus sinensis]1.2e-1030.77Show/hide
Query:  LTENLSDREIEDAVILVWSIWSIRNRTLIDSNKFRPEFDQI-INQIARNFQNSKEEKSPYLPKVRDPRRESFWSQALWNPPPQNCWKLNYEASWNAKENK
        L  N    E E  ++  W+IW  RN+ + +  K  P         +   +Q  ++  + ++   R+       SQ  W+PPP N  KLN +A+ N+K+ K
Subjt:  LTENLSDREIEDAVILVWSIWSIRNRTLIDSNKFRPEFDQI-INQIARNFQNSKEEKSPYLPKVRDPRRESFWSQALWNPPPQNCWKLNYEASWNAKENK

Query:  GGLGWTLRDFSGSLICAGSKVVQEQWPINILEANAMWEGLQFA
         GLG  LRD +G ++ AG K    +  ++  EA A+  GLQ A
Subjt:  GGLGWTLRDFSGSLICAGSKVVQEQWPINILEANAMWEGLQFA

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]2.9e-1733.54Show/hide
Query:  DFWCWLTENLSDREIEDAVILVWSIWSIRNRTLIDSNKFRPEF--DQIINQIARNFQNSKEEKSPYLPKVRDPRRESFWSQ----------ALWNPPPQN
        D W WL   LSD E+  ++++ W IW  RNR++     FR E   +Q +++    F NS  +K   + + R  ++   +              W+ PP N
Subjt:  DFWCWLTENLSDREIEDAVILVWSIWSIRNRTLIDSNKFRPEF--DQIINQIARNFQNSKEEKSPYLPKVRDPRRESFWSQ----------ALWNPPPQN

Query:  CWKLNYEASWNAKENKGGLGWTLRDFSGSLICAGSKVVQEQWPINILEANAMWEGLQF
        CWKLN +ASW+ +   GG+GW L D  G ++ AG+  ++E+  IN LE   +  GLQF
Subjt:  CWKLNYEASWNAKENKGGLGWTLRDFSGSLICAGSKVVQEQWPINILEANAMWEGLQF

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]5.1e-1430.67Show/hide
Query:  DFWCWLTENLSDREIEDAVILVWSIWSIRNRTLI-----DSNKFRPEFDQIINQIARNFQNSKEEKSPYLPKVRDPRRESFWSQALWNPPPQNCWKLNYE
        ++W WL +   + E   ++I+   IW +RN+++      ++   +   D+ I   A    N K +   + P     RR    ++A W PP  N WKLN +
Subjt:  DFWCWLTENLSDREIEDAVILVWSIWSIRNRTLI-----DSNKFRPEFDQIINQIARNFQNSKEEKSPYLPKVRDPRRESFWSQALWNPPPQNCWKLNYE

Query:  ASWNAKENKGGLGWTLRDFSGSLICAGSKVVQEQWPINILEANAMWEGLQ
        A+W A  N  G+GW LRD  G +I  G ++++ +  I  LE  A+ EGL+
Subjt:  ASWNAKENKGGLGWTLRDFSGSLICAGSKVVQEQWPINILEANAMWEGLQ

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]5.1e-1430.67Show/hide
Query:  DFWCWLTENLSDREIEDAVILVWSIWSIRNRTLI-----DSNKFRPEFDQIINQIARNFQNSKEEKSPYLPKVRDPRRESFWSQALWNPPPQNCWKLNYE
        ++W WL +   + E   ++I+   IW +RN+++      ++   +   D+ I   A    N K +   + P     RR    ++A W PP  N WKLN +
Subjt:  DFWCWLTENLSDREIEDAVILVWSIWSIRNRTLI-----DSNKFRPEFDQIINQIARNFQNSKEEKSPYLPKVRDPRRESFWSQALWNPPPQNCWKLNYE

Query:  ASWNAKENKGGLGWTLRDFSGSLICAGSKVVQEQWPINILEANAMWEGLQ
        A+W A  N  G+GW LRD  G +I  G ++++ +  I  LE  A+ EGL+
Subjt:  ASWNAKENKGGLGWTLRDFSGSLICAGSKVVQEQWPINILEANAMWEGLQ

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.6e-1227.86Show/hide
Query:  LTENLSDREIEDAVILVWSIWSIRNRTLIDSNKFRPEFDQIINQIARNFQNSKEEKSPYLPKVRDPRRESFWSQALWNPPPQNCWKLNYEASWNAKENKG
        + +  SD +++  +I  W IW+ RN  +         F  +I Q+ +    S  +    L  +     ++  ++  W PPP + W LN +ASW+   ++G
Subjt:  LTENLSDREIEDAVILVWSIWSIRNRTLIDSNKFRPEFDQIINQIARNFQNSKEEKSPYLPKVRDPRRESFWSQALWNPPPQNCWKLNYEASWNAKENKG

Query:  GLGWTLRDFSGSLICAGSKVVQEQWPINILEANAMWEGLQ
        G+GW +R + G ++ AG++ V+    + +LEA+A+ EGL+
Subjt:  GLGWTLRDFSGSLICAGSKVVQEQWPINILEANAMWEGLQ

TrEMBL top hitse value%identityAlignment
A0A6J1CQG0 uncharacterized protein LOC1110132161.4e-1733.54Show/hide
Query:  DFWCWLTENLSDREIEDAVILVWSIWSIRNRTLIDSNKFRPEF--DQIINQIARNFQNSKEEKSPYLPKVRDPRRESFWSQ----------ALWNPPPQN
        D W WL   LSD E+  ++++ W IW  RNR++     FR E   +Q +++    F NS  +K   + + R  ++   +              W+ PP N
Subjt:  DFWCWLTENLSDREIEDAVILVWSIWSIRNRTLIDSNKFRPEF--DQIINQIARNFQNSKEEKSPYLPKVRDPRRESFWSQ----------ALWNPPPQN

Query:  CWKLNYEASWNAKENKGGLGWTLRDFSGSLICAGSKVVQEQWPINILEANAMWEGLQF
        CWKLN +ASW+ +   GG+GW L D  G ++ AG+  ++E+  IN LE   +  GLQF
Subjt:  CWKLNYEASWNAKENKGGLGWTLRDFSGSLICAGSKVVQEQWPINILEANAMWEGLQF

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X12.5e-1430.67Show/hide
Query:  DFWCWLTENLSDREIEDAVILVWSIWSIRNRTLI-----DSNKFRPEFDQIINQIARNFQNSKEEKSPYLPKVRDPRRESFWSQALWNPPPQNCWKLNYE
        ++W WL +   + E   ++I+   IW +RN+++      ++   +   D+ I   A    N K +   + P     RR    ++A W PP  N WKLN +
Subjt:  DFWCWLTENLSDREIEDAVILVWSIWSIRNRTLI-----DSNKFRPEFDQIINQIARNFQNSKEEKSPYLPKVRDPRRESFWSQALWNPPPQNCWKLNYE

Query:  ASWNAKENKGGLGWTLRDFSGSLICAGSKVVQEQWPINILEANAMWEGLQ
        A+W A  N  G+GW LRD  G +I  G ++++ +  I  LE  A+ EGL+
Subjt:  ASWNAKENKGGLGWTLRDFSGSLICAGSKVVQEQWPINILEANAMWEGLQ

A0A6J1DNV9 uncharacterized protein LOC1110224031.8e-1227.86Show/hide
Query:  LTENLSDREIEDAVILVWSIWSIRNRTLIDSNKFRPEFDQIINQIARNFQNSKEEKSPYLPKVRDPRRESFWSQALWNPPPQNCWKLNYEASWNAKENKG
        + +  SD +++  +I  W IW+ RN  +         F  +I Q+ +    S  +    L  +     ++  ++  W PPP + W LN +ASW+   ++G
Subjt:  LTENLSDREIEDAVILVWSIWSIRNRTLIDSNKFRPEFDQIINQIARNFQNSKEEKSPYLPKVRDPRRESFWSQALWNPPPQNCWKLNYEASWNAKENKG

Query:  GLGWTLRDFSGSLICAGSKVVQEQWPINILEANAMWEGLQ
        G+GW +R + G ++ AG++ V+    + +LEA+A+ EGL+
Subjt:  GLGWTLRDFSGSLICAGSKVVQEQWPINILEANAMWEGLQ

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X22.5e-1430.67Show/hide
Query:  DFWCWLTENLSDREIEDAVILVWSIWSIRNRTLI-----DSNKFRPEFDQIINQIARNFQNSKEEKSPYLPKVRDPRRESFWSQALWNPPPQNCWKLNYE
        ++W WL +   + E   ++I+   IW +RN+++      ++   +   D+ I   A    N K +   + P     RR    ++A W PP  N WKLN +
Subjt:  DFWCWLTENLSDREIEDAVILVWSIWSIRNRTLI-----DSNKFRPEFDQIINQIARNFQNSKEEKSPYLPKVRDPRRESFWSQALWNPPPQNCWKLNYE

Query:  ASWNAKENKGGLGWTLRDFSGSLICAGSKVVQEQWPINILEANAMWEGLQ
        A+W A  N  G+GW LRD  G +I  G ++++ +  I  LE  A+ EGL+
Subjt:  ASWNAKENKGGLGWTLRDFSGSLICAGSKVVQEQWPINILEANAMWEGLQ

A0A803Q3I7 Uncharacterized protein1.3e-1029.22Show/hide
Query:  DFWCWLTENLSDREIEDAVILVWSIWSIRNRTLIDSNKFRPEFDQIINQIAR---NFQNSKEEKSPYLPKVRDP----RRESFWSQALWNPPPQNCWKLN
        D+   L+  L+ ++ E  + ++W IW+ RN+ +   +  +P    I+    R   +F  +++  SP       P       +      W PPP NC+KLN
Subjt:  DFWCWLTENLSDREIEDAVILVWSIWSIRNRTLIDSNKFRPEFDQIINQIAR---NFQNSKEEKSPYLPKVRDP----RRESFWSQALWNPPPQNCWKLN

Query:  YEASWNAKENKGGLGWTLRDFSGSLICAGSKVVQEQWPINILEANAMWEGLQFA
         +A+ N  + K G+G  +RD +GS++ A SKVVQ  +  + +EA A++  L +A
Subjt:  YEASWNAKENKGGLGWTLRDFSGSLICAGSKVVQEQWPINILEANAMWEGLQFA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.9e-0625Show/hide
Query:  LVWSIWSIRNRTLIDSNKFRPEFDQIINQIARNFQNSKEEKSPYLPKVRDPRRESFWSQALWNPPPQNCWKLNYEASWNAKENKGGLGWTLRDFSGSLIC
        L+W +W  RN  +    ++  +  +++ +   +F+     +     K   P+ E   S   W  PP    K N +A+W  +  + G+GW LR+ SG ++ 
Subjt:  LVWSIWSIRNRTLIDSNKFRPEFDQIINQIARNFQNSKEEKSPYLPKVRDPRRESFWSQALWNPPPQNCWKLNYEASWNAKENKGGLGWTLRDFSGSLIC

Query:  AGSKVVQEQWPINILEANAMWEGLQFAL
         G++ +      N+LEA    E L++A+
Subjt:  AGSKVVQEQWPINILEANAMWEGLQFAL

AT4G29090.1 Ribonuclease H-like superfamily protein5.4e-0623.39Show/hide
Query:  LVWSIWSIRNRTLIDSNKFRPEFDQIINQIARNFQ----NSKEEKSPYLPKVRDPRRESFWSQALWNPPPQNCWKLNYEASWNAKENKGGLGWTLRDFSG
        L+W +W  RN  +    +F  +  +++ +   + +     ++ E     P+V         S   W PPP    K N +A+WN    + G+GW LR+  G
Subjt:  LVWSIWSIRNRTLIDSNKFRPEFDQIINQIARNFQ----NSKEEKSPYLPKVRDPRRESFWSQALWNPPPQNCWKLNYEASWNAKENKGGLGWTLRDFSG

Query:  SLICAGSKVVQEQWPINILEANAM
         +   G++ + +   +   E  AM
Subjt:  SLICAGSKVVQEQWPINILEANAM

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.9e-0628.85Show/hide
Query:  LVWSIWSIRNRTLID--SNKFRPEFDQIINQIARNFQNSKEEKSPYLPKVRDPRRESFWSQALWNPPPQNCWKLNYEASWNAKENKGGLGWTLRDFSGSL
        L+W IW   N  + +    KF+   +  +N       N+   +     +  DP R + WS     PP ++  K NY+AS + +    GLGW LR+  G++
Subjt:  LVWSIWSIRNRTLID--SNKFRPEFDQIINQIARNFQNSKEEKSPYLPKVRDPRRESFWSQALWNPPPQNCWKLNYEASWNAKENKGGLGWTLRDFSGSL

Query:  ICAG
        I  G
Subjt:  ICAG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTTTGGTGTTGGCTTACCGAGAACCTAAGCGACAGGGAGATTGAGGATGCGGTCATTCTAGTGTGGAGCATATGGTCAATCAGGAATAGAACCCTCATCGATTC
AAACAAGTTCAGACCAGAATTCGACCAGATTATCAACCAAATTGCCAGAAATTTTCAAAATTCAAAGGAAGAGAAGAGTCCTTACCTGCCGAAAGTTAGGGATCCCAGAC
GAGAGAGCTTCTGGAGTCAAGCTTTGTGGAATCCGCCGCCTCAGAACTGTTGGAAACTAAATTATGAAGCCTCTTGGAACGCAAAGGAGAACAAAGGAGGCCTGGGTTGG
ACCCTGCGTGACTTCAGCGGGTCTCTCATCTGTGCAGGATCGAAAGTGGTTCAGGAGCAATGGCCGATTAATATTCTTGAAGCAAATGCTATGTGGGAGGGATTGCAGTT
TGCTCTCTCTTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTTTGGTGTTGGCTTACCGAGAACCTAAGCGACAGGGAGATTGAGGATGCGGTCATTCTAGTGTGGAGCATATGGTCAATCAGGAATAGAACCCTCATCGATTC
AAACAAGTTCAGACCAGAATTCGACCAGATTATCAACCAAATTGCCAGAAATTTTCAAAATTCAAAGGAAGAGAAGAGTCCTTACCTGCCGAAAGTTAGGGATCCCAGAC
GAGAGAGCTTCTGGAGTCAAGCTTTGTGGAATCCGCCGCCTCAGAACTGTTGGAAACTAAATTATGAAGCCTCTTGGAACGCAAAGGAGAACAAAGGAGGCCTGGGTTGG
ACCCTGCGTGACTTCAGCGGGTCTCTCATCTGTGCAGGATCGAAAGTGGTTCAGGAGCAATGGCCGATTAATATTCTTGAAGCAAATGCTATGTGGGAGGGATTGCAGTT
TGCTCTCTCTTCCTGA
Protein sequenceShow/hide protein sequence
MDFWCWLTENLSDREIEDAVILVWSIWSIRNRTLIDSNKFRPEFDQIINQIARNFQNSKEEKSPYLPKVRDPRRESFWSQALWNPPPQNCWKLNYEASWNAKENKGGLGW
TLRDFSGSLICAGSKVVQEQWPINILEANAMWEGLQFALSS