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Lcy12g003100 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy12g003100
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRibonuclease H
Genome locationChr12:9106849..9112008
RNA-Seq ExpressionLcy12g003100
SyntenyLcy12g003100
Gene Ontology termsGO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR009027 - Ribosomal protein L9/RNase H1, N-terminal
IPR011320 - Ribonuclease H1, N-terminal
IPR037056 - Ribonuclease H1, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
REK68314.1 ribonuclease H [Cohnella sp.]1.1e-0760Show/hide
Query:  MGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAFR
        M   K+YVV+AGRNPGIY SW EC KQ+ +F GA +K + + AEAE AFR
Subjt:  MGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAFR
RYR74402.1 hypothetical protein Ahy_A02g009104 [Arachis hypogaea]3.8e-0843.42Show/hide
Query:  LLMSMGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAFRHYVMVTSGQANFTDQQQVCRNL
        L M     K+YVVF GR PGIY+SW  CH QVN+F G LHK Y T  EA  AF  ++     Q   T+   +   +
Subjt:  LLMSMGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAFRHYVMVTSGQANFTDQQQVCRNL
WP_019007846.1 ribonuclease H family protein [Cohnella laeviribosi]1.1e-0760Show/hide
Query:  MGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAFR
        M   K+YVV+AGRNPGIY SW EC KQ+ +F GA +K + + AEAE AFR
Subjt:  MGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAFR
WP_080833399.1 MULTISPECIES: ribonuclease H family protein [Cohnella]5.0e-0862Show/hide
Query:  MGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAFR
        M  SKFYVV+AGRNPGIY SW EC KQ+ +F  A +K Y + AEAE AF+
Subjt:  MGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAFR
WP_138879431.1 ribonuclease H family protein [Paenibacillus mesophilus]1.3e-0855.74Show/hide
Query:  MGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAFRHYVMVTSGQAN
        M  +K+YVV+ GR PGIYTSW EC KQVNQF+GA  K + T AEAE A+      + GQA+
Subjt:  MGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAFRHYVMVTSGQAN
TrEMBL top hitse value%identityAlignment
A0A163HJQ5 Ribonuclease H2.7e-0748.48Show/hide
Query:  MGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAFRHYVMVTSGQANFTDQQ
        M   KFYVV+ G+ PGIYTSW EC +QVNQF GA  K + + +EAE A+       +G  N+  QQ
Subjt:  MGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAFRHYVMVTSGQANFTDQQ
A0A2W1L8J3 Ribonuclease H7.1e-0854.1Show/hide
Query:  MGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAFRHYVMVTSGQAN
        M  SK+YVV+AG  PGIYTSW EC KQVN+F  A  K Y + AEAE AF+       GQ +
Subjt:  MGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAFRHYVMVTSGQAN
A0A445EFW3 Cauli_VI domain-containing protein1.9e-0843.42Show/hide
Query:  LLMSMGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAFRHYVMVTSGQANFTDQQQVCRNL
        L M     K+YVVF GR PGIY+SW  CH QVN+F G LHK Y T  EA  AF  ++     Q   T+   +   +
Subjt:  LLMSMGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAFRHYVMVTSGQANFTDQQQVCRNL
A0A7U6ARX6 Ribonuclease H2.7e-0748.48Show/hide
Query:  MGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAFRHYVMVTSGQANFTDQQ
        M   KFYVV+ G+ PGIYTSW EC +QVNQF GA  K + + +EAE A+       +G  N+  QQ
Subjt:  MGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAFRHYVMVTSGQANFTDQQ
B3JKA8 Ribonuclease H2.1e-0744.26Show/hide
Query:  SWFCPYFVLLMSMGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAF
        +WF    ++ +     KFYVV+ G  PGIYTSW +C  Q+  ++GA++K +AT  EAE+AF
Subjt:  SWFCPYFVLLMSMGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAF
SwissProt top hitse value%identityAlignment
Q07762 Ribonuclease H2.0e-0450Show/hide
Query:  FYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEA
        FYVV  GR  GIY++W +C +QV  F GA++K + T +EA
Subjt:  FYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEA
Q9KEI9 Ribonuclease H6.8e-0856Show/hide
Query:  MGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAFR
        M  SK+YVV+ GR PGIYTSW  C  QV  + GA  K Y +  EAE AFR
Subjt:  MGTSKFYVVFAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAFR
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGTGTGCAACTGCTGCAAAGAAGCTCTTGGATTGCATGCTTATCTTCTTCGGTTTCGGAGGGACGTTCGATTTAAGATTTGTGATCTCCTCTCAGATCTG
TCTTCTCCTCGCTCCCTCTTCATGAATCTGAGATCCCACCTCATGCCGCTTCAACTTGTCGCAGCTGTCGACGTTCGATTCGGGATCCGCATGTTCATGCACATG
GTTCTGTCCATATTTTTAACTTCTCATTTGTGTTGTTCATGCTCATGGTTCTGTCCATATTTTGTACTTCTCATGAGTATGGGGACATCAAAATTCTATGTGGTG
TTTGCTGGTCGCAACCCAGGAATTTACACCTCGTGGGTTGAATGCCACAAACAAGTGAACCAATTTAGGGGAGCACTACACAAGTTGTATGCAACATGTGCAGAA
GCAGAGTATGCATTTAGGCATTATGTAATGGTGACTAGTGGCCAAGCAAACTTCACTGATCAACAACAAGTGTGTCGTAACCTCCCCGTTATGGGATATGGGTCA
TGTAGAAAAATGGTACAGTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGGTGTGCAACTGCTGCAAAGAAGCTCTTGGATTGCATGCTTATCTTCTTCGGTTTCGGAGGGACGTTCGATTTAAGATTTGTGATCTCCTCTCAGATCTG
TCTTCTCCTCGCTCCCTCTTCATGAATCTGAGATCCCACCTCATGCCGCTTCAACTTGTCGCAGCTGTCGACGTTCGATTCGGGATCCGCATGTTCATGCACATG
GTTCTGTCCATATTTTTAACTTCTCATTTGTGTTGTTCATGCTCATGGTTCTGTCCATATTTTGTACTTCTCATGAGTATGGGGACATCAAAATTCTATGTGGTG
TTTGCTGGTCGCAACCCAGGAATTTACACCTCGTGGGTTGAATGCCACAAACAAGTGAACCAATTTAGGGGAGCACTACACAAGTTGTATGCAACATGTGCAGAA
GCAGAGTATGCATTTAGGCATTATGTAATGGTGACTAGTGGCCAAGCAAACTTCACTGATCAACAACAAGTGTGTCGTAACCTCCCCGTTATGGGATATGGGTCA
TGTAGAAAAATGGTACAGTATTAG
Protein sequenceShow/hide protein sequence
MLVCNCCKEALGLHAYLLRFRRDVRFKICDLLSDLSSPRSLFMNLRSHLMPLQLVAAVDVRFGIRMFMHMVLSIFLTSHLCCSCSWFCPYFVLLMSMGTSKFYVV
FAGRNPGIYTSWVECHKQVNQFRGALHKLYATCAEAEYAFRHYVMVTSGQANFTDQQQVCRNLPVMGYGSCRKMVQY