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Lcy12g005120 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy12g005120
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionTranscription elongation factor B polypeptide 3 isoform X2
Genome locationChr12:19409904..19410242
RNA-Seq ExpressionLcy12g005120
SyntenyLcy12g005120
Gene Ontology termsGO:0008152 - metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054521.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa]1.9e-1041.05Show/hide
Query:  RKSECGKKISVEERSGARVRRIDLDVGTAAWVRDCLVSGSRFGRTVGFWRRRVDAAVIFFQFLSNARGRFGLLSVEPFRGRRSTILFLEGSNRKG
        R SECG+KI +EER+G R R+++L++GT+AWVRDCLV+ +     + FWRRR     +      N  GR  L +     GR  +    EGS + G
Subjt:  RKSECGKKISVEERSGARVRRIDLDVGTAAWVRDCLVSGSRFGRTVGFWRRRVDAAVIFFQFLSNARGRFGLLSVEPFRGRRSTILFLEGSNRKG

TYK14183.1 hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]1.5e-1842.86Show/hide
Query:  MRRVVIERKTFTLRKSECGKKISVEERSGARVRRIDLDVGTAAWVRDCLVSGSRFGRTVGFWRRRVDAAVIFFQFLSNARGRFGLLSVEPFRGRRSTILF
        M ++ I+RK F +      +KI +EER+G    +++LD GT+AWVRDCLV  +    ++ FW+RR++ A+IFFQ L N +GRF +LS+E F+ R++ I  
Subjt:  MRRVVIERKTFTLRKSECGKKISVEERSGARVRRIDLDVGTAAWVRDCLVSGSRFGRTVGFWRRRVDAAVIFFQFLSNARGRFGLLSVEPFRGRRSTILF

Query:  LEGSNRKGWATI
         EGS   GW ++
Subjt:  LEGSNRKGWATI

TrEMBL top hitse value%identityAlignment
A0A0A0KB99 Uncharacterized protein2.3e-0948Show/hide
Query:  IDLDVGTAAWVRDCLVSGSRFGRTVGFW-RRRVDAAVIFFQFLSNARGRFGLLSVEPFRGRRSTILFLEGSNRKG
        ++LD GT+A VRDCL + +       FW RR +  A+IFFQ L NARGRF +LS+E F+G+++ I   +GS  KG
Subjt:  IDLDVGTAAWVRDCLVSGSRFGRTVGFW-RRRVDAAVIFFQFLSNARGRFGLLSVEPFRGRRSTILFLEGSNRKG

A0A0A0KGZ5 Uncharacterized protein8.2e-0737.18Show/hide
Query:  RKTFTLRKSECGKKISVEERSGARVRRIDLDVGTAAWVRDCLVSGSRFGRTVGF-WRRRVDAAVIFFQFLSNARGRFG
        ++++    ++CG+KI +EE +G R  +++L++G +AWV DCLV+ +     +GF WRR ++   IFFQ  ++  GR G
Subjt:  RKTFTLRKSECGKKISVEERSGARVRRIDLDVGTAAWVRDCLVSGSRFGRTVGF-WRRRVDAAVIFFQFLSNARGRFG

A0A0A0LY03 Uncharacterized protein1.3e-1238.3Show/hide
Query:  KKISVEERSGARVRRIDLDVGTAAWVRDCLVSGSRFGRTVGFW-RRRVDAAVIFFQFLSNARGRFGLLSVEPFRGRRSTILFLEGSNRKGWATI
        +KI +EER+G +  ++DLD+GT  WV D L + +    ++G W R+++D  +IFFQ L N   RF ++S++ F+GR++ +   EGS   GW ++
Subjt:  KKISVEERSGARVRRIDLDVGTAAWVRDCLVSGSRFGRTVGFW-RRRVDAAVIFFQFLSNARGRFGLLSVEPFRGRRSTILFLEGSNRKGWATI

A0A5A7ULV4 Transcription elongation factor B polypeptide 3 isoform X29.3e-1141.05Show/hide
Query:  RKSECGKKISVEERSGARVRRIDLDVGTAAWVRDCLVSGSRFGRTVGFWRRRVDAAVIFFQFLSNARGRFGLLSVEPFRGRRSTILFLEGSNRKG
        R SECG+KI +EER+G R R+++L++GT+AWVRDCLV+ +     + FWRRR     +      N  GR  L +     GR  +    EGS + G
Subjt:  RKSECGKKISVEERSGARVRRIDLDVGTAAWVRDCLVSGSRFGRTVGFWRRRVDAAVIFFQFLSNARGRFGLLSVEPFRGRRSTILFLEGSNRKG

A0A5D3CQQ0 Uncharacterized protein7.1e-1942.86Show/hide
Query:  MRRVVIERKTFTLRKSECGKKISVEERSGARVRRIDLDVGTAAWVRDCLVSGSRFGRTVGFWRRRVDAAVIFFQFLSNARGRFGLLSVEPFRGRRSTILF
        M ++ I+RK F +      +KI +EER+G    +++LD GT+AWVRDCLV  +    ++ FW+RR++ A+IFFQ L N +GRF +LS+E F+ R++ I  
Subjt:  MRRVVIERKTFTLRKSECGKKISVEERSGARVRRIDLDVGTAAWVRDCLVSGSRFGRTVGFWRRRVDAAVIFFQFLSNARGRFGLLSVEPFRGRRSTILF

Query:  LEGSNRKGWATI
         EGS   GW ++
Subjt:  LEGSNRKGWATI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAGAGTCGTTATTGAAAGGAAGACGTTTACGTTGCGCAAGAGTGAGTGTGGTAAGAAAATTTCTGTTGAGGAACGCAGTGGAGCAAGGGTGAGAAGGATTGATTT
GGATGTGGGTACAGCTGCATGGGTAAGAGATTGCTTAGTTTCAGGGTCAAGATTTGGGCGAACGGTGGGCTTCTGGAGAAGAAGAGTTGATGCAGCGGTTATCTTCTTCC
AATTTCTGTCGAACGCGAGAGGTAGGTTCGGTCTTCTCTCGGTAGAACCTTTTAGAGGTAGGAGATCCACAATCCTCTTCTTGGAGGGGTCGAACAGAAAGGGGTGGGCT
ACCATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGAGAGTCGTTATTGAAAGGAAGACGTTTACGTTGCGCAAGAGTGAGTGTGGTAAGAAAATTTCTGTTGAGGAACGCAGTGGAGCAAGGGTGAGAAGGATTGATTT
GGATGTGGGTACAGCTGCATGGGTAAGAGATTGCTTAGTTTCAGGGTCAAGATTTGGGCGAACGGTGGGCTTCTGGAGAAGAAGAGTTGATGCAGCGGTTATCTTCTTCC
AATTTCTGTCGAACGCGAGAGGTAGGTTCGGTCTTCTCTCGGTAGAACCTTTTAGAGGTAGGAGATCCACAATCCTCTTCTTGGAGGGGTCGAACAGAAAGGGGTGGGCT
ACCATCTAA
Protein sequenceShow/hide protein sequence
MRRVVIERKTFTLRKSECGKKISVEERSGARVRRIDLDVGTAAWVRDCLVSGSRFGRTVGFWRRRVDAAVIFFQFLSNARGRFGLLSVEPFRGRRSTILFLEGSNRKGWA
TI