; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy12g006010 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy12g006010
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
Genome locationChr12:26491999..26495541
RNA-Seq ExpressionLcy12g006010
SyntenyLcy12g006010
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.6e-1832.86Show/hide
Query:  QRSIIICWQIWNFRNSILHRNQFPNTETLQHQIRNAL------QTYQEERATYS--HLCRESADVNLCRATAAVRQWAVEPSDFWVLSSDASWSAKQNSD
        +RS+II WQIW  RN  + +   P T  +Q  I   +       T  + ++T    HL R   D      T A  QW    S+ W L+++A+W A  N+ 
Subjt:  QRSIIICWQIWNFRNSILHRNQFPNTETLQHQIRNAL------QTYQEERATYS--HLCRESADVNLCRATAAVRQWAVEPSDFWVLSSDASWSAKQNSD

Query:  GVGWILRRGDRSLVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDSPRLI-IELDSIQVVHRLEGKEEDMTETMVFVEEAKRLLSARHGLEVRHIPRGLN
        G+GWILR     ++ A+   I     + +LE +A+ EGL+ I  +  R I +E DS++ +H L  + +D TE +  +EE  +++     + +RHI R  N
Subjt:  GVGWILRRGDRSLVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDSPRLI-IELDSIQVVHRLEGKEEDMTETMVFVEEAKRLLSARHGLEVRHIPRGLN

Query:  KMAHFLAQKA
        K+AH LA++A
Subjt:  KMAHFLAQKA

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]9.6e-1328.86Show/hide
Query:  MWALFFQFPTDLFCLDRNGWSIPDYCESLWRGSGDTTWDCNRIQRSIIICWQIWNFRNSILHRNQFPNTETLQHQI-RNALQTYQEERATYSHLCRESAD
        +W        + F +DR  W+  +Y E L   +G+        +RS+II  QIW  RN  + +     T  +Q  I R  + +  ++    ++L R+S D
Subjt:  MWALFFQFPTDLFCLDRNGWSIPDYCESLWRGSGDTTWDCNRIQRSIIICWQIWNFRNSILHRNQFPNTETLQHQI-RNALQTYQEERATYSHLCRESAD

Query:  VNLCRATA--AVRQWAVEPSDFWVLSSDASWSAKQNSDGVGWILRRGDRSLVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDSPRLI-IELDSIQVVHR
         +  R        +W    S+ W L++DA+W A  N+DG+GWILR     ++      I     + +LE +A+ EGL+ I  +  R I +E DS++ +H 
Subjt:  VNLCRATA--AVRQWAVEPSDFWVLSSDASWSAKQNSDGVGWILRRGDRSLVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDSPRLI-IELDSIQVVHR

Query:  L
        L
Subjt:  L

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]5.2e-1931.7Show/hide
Query:  IIICWQIWNFRNSILHRNQFPNTETLQHQIRNALQTYQEERATYSHLCRESADVNLCRATAAVRQWAVEPSDFWVLSSDASWSAKQNSDGVGWILRRGDR
        +I  W IWN RN ++ R +  +  T+  Q+   +     +  T   +  ++ +  L        +W   P   W L++DASWS   +  G+GWI+R  D 
Subjt:  IIICWQIWNFRNSILHRNQFPNTETLQHQIRNALQTYQEERATYSHLCRESADVNLCRATAAVRQWAVEPSDFWVLSSDASWSAKQNSDGVGWILRRGDR

Query:  SLVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDS--PRLIIELDSIQVVHRLEGKEEDMTETMVFVEEAKRLLSARHGLEVRHIPRGLNKMAHFLAQKA
         +V A    +     V  LEA A++EGL+N+        L IE DS +V   L  K ED+T+T   VEE   L  +   L    + R  N  AH LAQ+A
Subjt:  SLVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDS--PRLIIELDSIQVVHRLEGKEEDMTETMVFVEEAKRLLSARHGLEVRHIPRGLNKMAHFLAQKA

Query:  GLSKTSFSWFNEFPLWLLQLNEDR
         + + S  W + FP WL  L + R
Subjt:  GLSKTSFSWFNEFPLWLLQLNEDR

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]3.2e-1630.66Show/hide
Query:  QRSIIICWQIWNFRNSILHRNQFPNTETLQHQIRNALQTYQEERATYSHLCRESADVNLCRATA--AVRQWAVEPSDFWVLSSDASWSAKQNSDGVGWIL
        +RS+II WQIW  RN  + +     T  +Q  I   +      R T       + D++L R        +W    S+ W L++DA+W A  N+ G+GWIL
Subjt:  QRSIIICWQIWNFRNSILHRNQFPNTETLQHQIRNALQTYQEERATYSHLCRESADVNLCRATA--AVRQWAVEPSDFWVLSSDASWSAKQNSDGVGWIL

Query:  RRGDRSLVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDSPRLI---------IELDSIQVVHRLEGKEEDMTETMVFVEEAKRLLSARHGLEVRHIPRG
        R     ++ A    I     + +LE +A+ EGL+ I  +  R I         +E DS++ +H L  + +D TE +  +EE  +++     + +RHI R 
Subjt:  RRGDRSLVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDSPRLI---------IELDSIQVVHRLEGKEEDMTETMVFVEEAKRLLSARHGLEVRHIPRG

Query:  LNKMAHFLAQKA
         NK+AH LA++A
Subjt:  LNKMAHFLAQKA

XP_039123429.1 uncharacterized protein LOC120260051 [Dioscorea cayenensis subsp. rotundata]3.1e-1129.72Show/hide
Query:  IICWQIWNFRNSILHRNQFPNTETLQHQIRNALQTYQEERATYSHLCRESADVNLCRATAAVRQWAVEPSDFWVLSSDASWSAKQNSDGVGWILRRGDRS
        I+CW+IW  RN +L R +F     L +   + L  +QEE+       R ++DV +    AA+  W+  PS +  +++DA+ SA     G+ WILR  D S
Subjt:  IICWQIWNFRNSILHRNQFPNTETLQHQIRNALQTYQEERATYSHLCRESADVNLCRATAAVRQWAVEPSDFWVLSSDASWSAKQNSDGVGWILRRGDRS

Query:  LVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDS-PRLIIELDSIQVVHRLEGKEEDMTETMVFVEEAKRLLSARHGLEVRHIPRGLNKMAHFLAQKAGL
        +VAAA   I     V   EAL + E L  +  +    + +E D+ QV+  +   E   +E  +   +   LLS+   +    + R  N +A  LA+ A  
Subjt:  LVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDS-PRLIIELDSIQVVHRLEGKEEDMTETMVFVEEAKRLLSARHGLEVRHIPRGLNKMAHFLAQKAGL

Query:  SKTSFSWFNEFP
              W N  P
Subjt:  SKTSFSWFNEFP

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.3e-1832.86Show/hide
Query:  QRSIIICWQIWNFRNSILHRNQFPNTETLQHQIRNAL------QTYQEERATYS--HLCRESADVNLCRATAAVRQWAVEPSDFWVLSSDASWSAKQNSD
        +RS+II WQIW  RN  + +   P T  +Q  I   +       T  + ++T    HL R   D      T A  QW    S+ W L+++A+W A  N+ 
Subjt:  QRSIIICWQIWNFRNSILHRNQFPNTETLQHQIRNAL------QTYQEERATYS--HLCRESADVNLCRATAAVRQWAVEPSDFWVLSSDASWSAKQNSD

Query:  GVGWILRRGDRSLVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDSPRLI-IELDSIQVVHRLEGKEEDMTETMVFVEEAKRLLSARHGLEVRHIPRGLN
        G+GWILR     ++ A+   I     + +LE +A+ EGL+ I  +  R I +E DS++ +H L  + +D TE +  +EE  +++     + +RHI R  N
Subjt:  GVGWILRRGDRSLVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDSPRLI-IELDSIQVVHRLEGKEEDMTETMVFVEEAKRLLSARHGLEVRHIPRGLN

Query:  KMAHFLAQKA
        K+AH LA++A
Subjt:  KMAHFLAQKA

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X14.6e-1328.86Show/hide
Query:  MWALFFQFPTDLFCLDRNGWSIPDYCESLWRGSGDTTWDCNRIQRSIIICWQIWNFRNSILHRNQFPNTETLQHQI-RNALQTYQEERATYSHLCRESAD
        +W        + F +DR  W+  +Y E L   +G+        +RS+II  QIW  RN  + +     T  +Q  I R  + +  ++    ++L R+S D
Subjt:  MWALFFQFPTDLFCLDRNGWSIPDYCESLWRGSGDTTWDCNRIQRSIIICWQIWNFRNSILHRNQFPNTETLQHQI-RNALQTYQEERATYSHLCRESAD

Query:  VNLCRATA--AVRQWAVEPSDFWVLSSDASWSAKQNSDGVGWILRRGDRSLVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDSPRLI-IELDSIQVVHR
         +  R        +W    S+ W L++DA+W A  N+DG+GWILR     ++      I     + +LE +A+ EGL+ I  +  R I +E DS++ +H 
Subjt:  VNLCRATA--AVRQWAVEPSDFWVLSSDASWSAKQNSDGVGWILRRGDRSLVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDSPRLI-IELDSIQVVHR

Query:  L
        L
Subjt:  L

A0A6J1DNV9 uncharacterized protein LOC1110224032.5e-1931.7Show/hide
Query:  IIICWQIWNFRNSILHRNQFPNTETLQHQIRNALQTYQEERATYSHLCRESADVNLCRATAAVRQWAVEPSDFWVLSSDASWSAKQNSDGVGWILRRGDR
        +I  W IWN RN ++ R +  +  T+  Q+   +     +  T   +  ++ +  L        +W   P   W L++DASWS   +  G+GWI+R  D 
Subjt:  IIICWQIWNFRNSILHRNQFPNTETLQHQIRNALQTYQEERATYSHLCRESADVNLCRATAAVRQWAVEPSDFWVLSSDASWSAKQNSDGVGWILRRGDR

Query:  SLVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDS--PRLIIELDSIQVVHRLEGKEEDMTETMVFVEEAKRLLSARHGLEVRHIPRGLNKMAHFLAQKA
         +V A    +     V  LEA A++EGL+N+        L IE DS +V   L  K ED+T+T   VEE   L  +   L    + R  N  AH LAQ+A
Subjt:  SLVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDS--PRLIIELDSIQVVHRLEGKEEDMTETMVFVEEAKRLLSARHGLEVRHIPRGLNKMAHFLAQKA

Query:  GLSKTSFSWFNEFPLWLLQLNEDR
         + + S  W + FP WL  L + R
Subjt:  GLSKTSFSWFNEFPLWLLQLNEDR

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X21.9e-1129.73Show/hide
Query:  RNGWSIPDYCESLWRGSGDTTWDCNRIQRSIIICWQIWNFRNSILHRNQFPNTETLQHQI-RNALQTYQEERATYSHLCRESADVNLCRATA--AVRQWA
        R  W+  +Y E L   +G+        +RS+II  QIW  RN  + +     T  +Q  I R  + +  ++    ++L R+S D +  R        +W 
Subjt:  RNGWSIPDYCESLWRGSGDTTWDCNRIQRSIIICWQIWNFRNSILHRNQFPNTETLQHQI-RNALQTYQEERATYSHLCRESADVNLCRATA--AVRQWA

Query:  VEPSDFWVLSSDASWSAKQNSDGVGWILRRGDRSLVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDSPRLI-IELDSIQVVHRL
           S+ W L++DA+W A  N+DG+GWILR     ++      I     + +LE +A+ EGL+ I  +  R I +E DS++ +H L
Subjt:  VEPSDFWVLSSDASWSAKQNSDGVGWILRRGDRSLVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDSPRLI-IELDSIQVVHRL

A0A6J1DSV1 uncharacterized protein LOC1110236081.5e-1630.66Show/hide
Query:  QRSIIICWQIWNFRNSILHRNQFPNTETLQHQIRNALQTYQEERATYSHLCRESADVNLCRATA--AVRQWAVEPSDFWVLSSDASWSAKQNSDGVGWIL
        +RS+II WQIW  RN  + +     T  +Q  I   +      R T       + D++L R        +W    S+ W L++DA+W A  N+ G+GWIL
Subjt:  QRSIIICWQIWNFRNSILHRNQFPNTETLQHQIRNALQTYQEERATYSHLCRESADVNLCRATA--AVRQWAVEPSDFWVLSSDASWSAKQNSDGVGWIL

Query:  RRGDRSLVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDSPRLI---------IELDSIQVVHRLEGKEEDMTETMVFVEEAKRLLSARHGLEVRHIPRG
        R     ++ A    I     + +LE +A+ EGL+ I  +  R I         +E DS++ +H L  + +D TE +  +EE  +++     + +RHI R 
Subjt:  RRGDRSLVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDSPRLI---------IELDSIQVVHRLEGKEEDMTETMVFVEEAKRLLSARHGLEVRHIPRG

Query:  LNKMAHFLAQKA
         NK+AH LA++A
Subjt:  LNKMAHFLAQKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.2e-0623.15Show/hide
Query:  ICWQIWNFRNSILHRNQFPNTETLQHQIRNALQTYQEERATYSHLCRESADVNLCRATAAVRQWAVEPSDFWVLSSDASWSAKQNSDGVGWILRRGDRSL
        + W++W  RN ++ + +  +   +   +R A++ + EE +T   L  +++   + R  +   QW   P  +   ++DA+W  +    G+GWILR     +
Subjt:  ICWQIWNFRNSILHRNQFPNTETLQHQIRNALQTYQEERATYSHLCRESADVNLCRATAAVRQWAVEPSDFWVLSSDASWSAKQNSDGVGWILRRGDRSL

Query:  VAAAFCHIHYSWKVLWLEALAMVEGLKNIPP-DSPRLIIELDSIQVVHRLEGKEEDMTETM-VFVEEAKRLLSARHGLEVRHIPRGLNKMAHFLAQKA-G
        +      +  +  VL  E  A+   +  +   +  R+I E D+  +V+ L    +D   T+   +E+ ++LL     ++    PRG NK+A  +A+++  
Subjt:  VAAAFCHIHYSWKVLWLEALAMVEGLKNIPP-DSPRLIIELDSIQVVHRLEGKEEDMTETM-VFVEEAKRLLSARHGLEVRHIPRGLNKMAHFLAQKA-G

Query:  LSKTSFSWFNEFPLWL
         S      F+  P WL
Subjt:  LSKTSFSWFNEFPLWL

AT4G29090.1 Ribonuclease H-like superfamily protein1.4e-0622.27Show/hide
Query:  WSIPDYCESLW---RGSGDTTWDCNRIQRSIIICWQIWNFRNSILHRNQFPNTETLQHQIRNALQTYQEER-ATYSHLCRESADVNLCRATAAVRQWAVE
        W+   Y    W    G+G+  W+    Q    + W++W  RN ++ R +  N    Q  +R A    +E R  T +  C     VN     ++  +W   
Subjt:  WSIPDYCESLW---RGSGDTTWDCNRIQRSIIICWQIWNFRNSILHRNQFPNTETLQHQIRNALQTYQEER-ATYSHLCRESADVNLCRATAAVRQWAVE

Query:  PSDFWVLSSDASWSAKQNSDGVGWILRRGDRSLVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDSPRLIIELDSIQVVHRLEGKEEDMTETMVFVEEAK
        P  +   ++DA+W+      G+GW+LR     +       +     VL  E  AM   + ++       +I     QV+  +   +E        +++ +
Subjt:  PSDFWVLSSDASWSAKQNSDGVGWILRRGDRSLVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDSPRLIIELDSIQVVHRLEGKEEDMTETMVFVEEAK

Query:  RLLSARHGLEVRHIPRGLNKMAHFLAQKA
        RLLS    ++   IPR  N +A  +A+++
Subjt:  RLLSARHGLEVRHIPRGLNKMAHFLAQKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGCTTTGTTTTTTCAATTTCCTACTGATTTGTTCTGTTTGGACAGGAATGGATGGTCAATCCCAGACTATTGCGAGAGTCTTTGGAGAGGCAGTGGAGACACGAC
GTGGGATTGCAATCGGATACAAAGGAGTATTATTATCTGCTGGCAAATTTGGAATTTCAGAAATTCTATCCTTCATAGGAACCAATTTCCCAACACAGAGACTCTACAAC
ATCAGATTCGGAATGCACTTCAGACATACCAGGAGGAGAGGGCTACTTACAGTCATCTTTGTCGCGAGAGCGCCGACGTGAATCTGTGCAGAGCAACTGCTGCAGTGAGG
CAGTGGGCAGTGGAACCATCGGATTTCTGGGTTCTCAGCAGCGATGCATCTTGGAGTGCCAAACAGAACAGTGACGGTGTTGGCTGGATACTTCGAAGGGGAGACAGGTC
GCTCGTGGCCGCCGCATTTTGCCACATTCACTATAGTTGGAAAGTTCTTTGGTTGGAAGCCCTTGCAATGGTAGAGGGTCTGAAAAACATTCCTCCTGATTCCCCTCGGC
TGATTATCGAGCTTGACTCTATTCAGGTGGTACATCGGCTTGAGGGGAAGGAGGAAGACATGACAGAAACCATGGTTTTTGTCGAGGAGGCCAAGCGTCTTCTCTCAGCG
AGGCATGGGCTAGAAGTTCGGCACATTCCAAGGGGCTTAAACAAAATGGCCCATTTCTTAGCACAAAAAGCTGGTTTATCAAAGACTTCTTTTAGTTGGTTTAATGAGTT
CCCACTTTGGCTTCTCCAATTAAATGAGGATAGGTCTCGTACCAGGTCCCTTCTTACTGCTCGGCTTCGCACCAGCCTCGGGGTACCGTCCATTCCATCGCTGTTGACAA
TGTTTGGTTGGGGAGTTACCTTGGCTGATGCTGCATACGATGGGTGGTGTGTTGGAGGAAAAGATGGTCTCCAAATTAGGCAGTTGGCCATCGCGGTACATCTTCCATCA
TTGTCTGAACTCGAAACTGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGGCTTTGTTTTTTCAATTTCCTACTGATTTGTTCTGTTTGGACAGGAATGGATGGTCAATCCCAGACTATTGCGAGAGTCTTTGGAGAGGCAGTGGAGACACGAC
GTGGGATTGCAATCGGATACAAAGGAGTATTATTATCTGCTGGCAAATTTGGAATTTCAGAAATTCTATCCTTCATAGGAACCAATTTCCCAACACAGAGACTCTACAAC
ATCAGATTCGGAATGCACTTCAGACATACCAGGAGGAGAGGGCTACTTACAGTCATCTTTGTCGCGAGAGCGCCGACGTGAATCTGTGCAGAGCAACTGCTGCAGTGAGG
CAGTGGGCAGTGGAACCATCGGATTTCTGGGTTCTCAGCAGCGATGCATCTTGGAGTGCCAAACAGAACAGTGACGGTGTTGGCTGGATACTTCGAAGGGGAGACAGGTC
GCTCGTGGCCGCCGCATTTTGCCACATTCACTATAGTTGGAAAGTTCTTTGGTTGGAAGCCCTTGCAATGGTAGAGGGTCTGAAAAACATTCCTCCTGATTCCCCTCGGC
TGATTATCGAGCTTGACTCTATTCAGGTGGTACATCGGCTTGAGGGGAAGGAGGAAGACATGACAGAAACCATGGTTTTTGTCGAGGAGGCCAAGCGTCTTCTCTCAGCG
AGGCATGGGCTAGAAGTTCGGCACATTCCAAGGGGCTTAAACAAAATGGCCCATTTCTTAGCACAAAAAGCTGGTTTATCAAAGACTTCTTTTAGTTGGTTTAATGAGTT
CCCACTTTGGCTTCTCCAATTAAATGAGGATAGGTCTCGTACCAGGTCCCTTCTTACTGCTCGGCTTCGCACCAGCCTCGGGGTACCGTCCATTCCATCGCTGTTGACAA
TGTTTGGTTGGGGAGTTACCTTGGCTGATGCTGCATACGATGGGTGGTGTGTTGGAGGAAAAGATGGTCTCCAAATTAGGCAGTTGGCCATCGCGGTACATCTTCCATCA
TTGTCTGAACTCGAAACTGAATAG
Protein sequenceShow/hide protein sequence
MWALFFQFPTDLFCLDRNGWSIPDYCESLWRGSGDTTWDCNRIQRSIIICWQIWNFRNSILHRNQFPNTETLQHQIRNALQTYQEERATYSHLCRESADVNLCRATAAVR
QWAVEPSDFWVLSSDASWSAKQNSDGVGWILRRGDRSLVAAAFCHIHYSWKVLWLEALAMVEGLKNIPPDSPRLIIELDSIQVVHRLEGKEEDMTETMVFVEEAKRLLSA
RHGLEVRHIPRGLNKMAHFLAQKAGLSKTSFSWFNEFPLWLLQLNEDRSRTRSLLTARLRTSLGVPSIPSLLTMFGWGVTLADAAYDGWCVGGKDGLQIRQLAIAVHLPS
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