; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lcy12g007760 (gene) of Sponge gourd (P93075) v1 genome

Gene IDLcy12g007760
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationChr12:32739472..32740129
RNA-Seq ExpressionLcy12g007760
SyntenyLcy12g007760
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015388012.1 uncharacterized protein LOC107177940 [Citrus sinensis]1.7e-1529.56Show/hide
Query:  SQSELSLVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIR
        ++SE+  VA+ +W+ W+ RNK++        +E     K  +V++Q        Q     +    A   W+PPP   LK+N DA+ H  S  +GL   IR
Subjt:  SQSELSLVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIR

Query:  KSDGSILAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNYFADFLA
         S G ++ A+   ++F  +  + E +++  G++VA +     +IVETDC M  +  N       ++   + EI S    F+ I F+++PR  N  A  LA
Subjt:  KSDGSILAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNYFADFLA

Query:  KHA
        K A
Subjt:  KHA

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]9.3e-1734.67Show/hide
Query:  LVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIRKSDGSI
        L A + W+IW DRN   HG S+     R  WI  Y  ++ +A   + +  +   V   P +  W PP D  +K+N+DA+C   S+ +GL   IR   G +
Subjt:  LVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIRKSDGSI

Query:  LAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFI
        L A S+FL   L     E+R I+E +K+A      R++VE+DCQ A+  +
Subjt:  LAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFI

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]9.0e-2034.95Show/hide
Query:  ELSLVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIRKSD
        +L+L A + W IWNDRN ++HG+ + PV+ + +W+  +L S  +A       S   + NH P    W P     LKLNTDA+C  +S+  G    IR S 
Subjt:  ELSLVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIRKSD

Query:  GSILAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNYFADFLAKHA
         S++AA+SI + F L   + E+R I+EG+K A       + VE+D  +A+  I        D    V EI +L   F  I F +  R  N  A  LAK  
Subjt:  GSILAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNYFADFLAKHA

Query:  RTVRSS
         T  S+
Subjt:  RTVRSS

XP_024033533.1 uncharacterized protein LOC112095662 [Citrus clementina]1.6e-1630.54Show/hide
Query:  SQSELSLVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIR
        ++SE+  VA+ +W+ W+ RNK++        +E     K  +V++Q        Q     +    A   W+PPP   LK+N DA+ H  S  +GL   IR
Subjt:  SQSELSLVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIR

Query:  KSDGSILAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNYFADFLA
         S G ++ A+   ++F  +  +VE +++  G++VA +     +IVETDC M  N  N       ++   + EI S    F+ I F+++PR  N  A  LA
Subjt:  KSDGSILAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNYFADFLA

Query:  KHA
        K A
Subjt:  KHA

XP_030498035.1 uncharacterized protein LOC115713693 [Cannabis sativa]7.1e-1730.77Show/hide
Query:  SQSELSLVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRD----RRVNHSPA-NVCWSPPPDHFLKLNTDASCHPSSSDSGL
        SQ EL LV    W IW DRNK+ HGES       + +   Y+ ++ KAN+ RP    +     +++  P   + W PP  + LKLN DA+ +P+S   G+
Subjt:  SQSELSLVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRD----RRVNHSPA-NVCWSPPPDHFLKLNTDASCHPSSSDSGL

Query:  SFSIRKSDGSILAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNYF
           +R   G ++AA S  +     +  +E +++   +    +L     +VETD     NF+N  +   +    I+ ++  L+ SF  IV  ++ R+ N  
Subjt:  SFSIRKSDGSILAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNYF

Query:  ADFLAKHA
        A  LAKHA
Subjt:  ADFLAKHA

TrEMBL top hitse value%identityAlignment
A0A6J1BQ49 uncharacterized protein LOC1110047864.5e-1734.67Show/hide
Query:  LVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIRKSDGSI
        L A + W+IW DRN   HG S+     R  WI  Y  ++ +A   + +  +   V   P +  W PP D  +K+N+DA+C   S+ +GL   IR   G +
Subjt:  LVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIRKSDGSI

Query:  LAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFI
        L A S+FL   L     E+R I+E +K+A      R++VE+DCQ A+  +
Subjt:  LAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFI

A0A6J1DX30 uncharacterized protein LOC1110248744.3e-2034.95Show/hide
Query:  ELSLVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIRKSD
        +L+L A + W IWNDRN ++HG+ + PV+ + +W+  +L S  +A       S   + NH P    W P     LKLNTDA+C  +S+  G    IR S 
Subjt:  ELSLVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIRKSD

Query:  GSILAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNYFADFLAKHA
         S++AA+SI + F L   + E+R I+EG+K A       + VE+D  +A+  I        D    V EI +L   F  I F +  R  N  A  LAK  
Subjt:  GSILAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNYFADFLAKHA

Query:  RTVRSS
         T  S+
Subjt:  RTVRSS

A0A6P5RZ31 uncharacterized protein LOC1107515793.2e-1531.68Show/hide
Query:  QSELSLVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIRK
        Q  LS      W IW D+N  +HG+      +         V F  ANSV           H P++  W PPP   LKLN D +C  S    GL   +R 
Subjt:  QSELSLVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIRK

Query:  SDGSILAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNYFADFLAK
          G ++ A S+ +     A + EL +I EG++   E G   ++VETD + A+N I   +  +     I+ +I  L  +F+ + F + PR  N  AD LAK
Subjt:  SDGSILAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNYFADFLAK

Query:  HA
         A
Subjt:  HA

A0A803NM27 Uncharacterized protein9.4e-1529.19Show/hide
Query:  KINAYSSQSELSLVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSG
        +I+   ++SEL ++  + WSIW+DRN V+HG+        S     +L SFQ A  +  + +     +   A+  W+PPP + LKLN DA+   +    G
Subjt:  KINAYSSQSELSLVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSG

Query:  LSFSIRKSDGSILAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNY
            IR S G++ AA S  +D       +E + +   +K A +L  K  +VETD  + VN + KS+   +    ++ ++ + +     +   ++ R+ N 
Subjt:  LSFSIRKSDGSILAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNY

Query:  FADFLAKHA
         A  LAKHA
Subjt:  FADFLAKHA

A0A803QAH8 Uncharacterized protein3.2e-1529.67Show/hide
Query:  KINAYSSQSELSLVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSG
        +I+   ++SEL ++  + WSIW+DRN V+HG+        S     +L SFQ A+ +  + +     +   A+  W+PPP  FLKLN DA+   +    G
Subjt:  KINAYSSQSELSLVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSG

Query:  LSFSIRKSDGSILAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNY
            IR S G + AA S  +D       +E + +   +K A +L  K  +VETD  + VN + KS+   +    ++ ++ + +     +   ++ R+ N 
Subjt:  LSFSIRKSDGSILAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNY

Query:  FADFLAKHA
         A  LAKHA
Subjt:  FADFLAKHA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.3e-1225.13Show/hide
Query:  SLVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVN-HSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIRKSDG
        +LV    W +W  RN+++         E    ++  +  F++ ++ R ++ +          +V W  PP  ++K NTDA+    +   G+ + +R   G
Subjt:  SLVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVN-HSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIRKSDG

Query:  SILAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNYFADFLAKHA
         +L   +  L  +      EL ++   +        KRII E+D Q  VN +N S   W  +   +E+I  L+  FEE+ F + PR  N  AD +A+ +
Subjt:  SILAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNYFADFLAKHA

AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.1e-0425.9Show/hide
Query:  KEYL-VSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIRKSDGSILAASSIFLDFSLEAHMVELRSIVEGMKVACE
        KE+L V  +  ++V+  Q++  R +       W  P   ++K N D S H    DSGL + IR S G+ L                E  +++  ++ A +
Subjt:  KEYL-VSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIRKSDGSILAASSIFLDFSLEAHMVELRSIVEGMKVACE

Query:  LGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNYFADFLAKHA
        LG +R+  E D  + VN + ++      +   +E I     +F  + F +  R  N   D LAK A
Subjt:  LGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNYFADFLAKHA

AT3G25270.1 Ribonuclease H-like superfamily protein2.4e-1023.35Show/hide
Query:  WSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHS------PANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIRKSDGSI
        W +W  RN++V  +  +  Q   +  +  +  ++  N+   VQS +++V+ S       A   W  PP  ++K N D + +  + ++   + +R  +G  
Subjt:  WSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHS------PANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIRKSDGSI

Query:  LAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVE-EIWSLMGSFEEIVFRYIPRNYNYFADFLAKH
        + +       + ++   E ++++  M+ A   G +++I E D +     +N   + +   + I E   W     FEE VF+++PR  N  AD LAKH
Subjt:  LAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVE-EIWSLMGSFEEIVFRYIPRNYNYFADFLAKH

AT4G29090.1 Ribonuclease H-like superfamily protein3.1e-1024Show/hide
Query:  LVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIRKSDGSI
        LV    W +W +RN++V        QE  +  ++ L  ++         ++  +VN S     W PPP  ++K NTDA+ +  +   G+ + +R   G +
Subjt:  LVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIRKSDGSI

Query:  L---AASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNYFADFLAKHA
            A +   L   LEA +  +R  V  +          +I E+D Q+ +  +N    +W  +   ++++  L+  F E+ F +IPR  N  A+ +A+ +
Subjt:  L---AASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNYFADFLAKHA

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-1128.72Show/hide
Query:  WSIWNDRNKVVHGESILPVQERSKW----IKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIRKSDGSILA
        W IW   N +V   +    Q   +      KE+L      N++   Q    R      N  WSPP    LK N DAS H  ++ SGL + +R S G+++ 
Subjt:  WSIWNDRNKVVHGESILPVQERSKW----IKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIRKSDGSILA

Query:  ASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNYFADFLAKHA
                 +     E  +++  ++ +   G K++I E D Q     IN  S     +   ++ I S + SFE I F +  R  N  ADFLAK A
Subjt:  ASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNYFADFLAKHA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATTAATGCGTATTCGTCCCAATCGGAGCTCAGCCTAGTCGCCACTTCCTACTGGTCTATCTGGAATGATAGAAATAAAGTAGTCCACGGTGAATCCATTCTGCC
AGTTCAAGAAAGGAGTAAATGGATAAAAGAGTACCTGGTTTCCTTTCAGAAAGCGAATTCTGTCCGGCCTGTGCAATCCCGAGATAGAAGGGTTAACCACTCTCCCGCCA
ATGTTTGTTGGTCTCCTCCTCCGGATCATTTCTTGAAACTTAACACTGATGCTTCATGCCATCCATCCAGTTCTGATTCTGGCTTGAGCTTCTCAATTCGAAAATCGGAT
GGATCGATCCTGGCTGCTTCATCGATTTTCCTAGATTTCTCCCTTGAAGCTCATATGGTTGAATTACGATCTATCGTCGAAGGAATGAAAGTGGCTTGTGAGTTGGGCGG
TAAGAGAATTATCGTGGAGACAGATTGCCAGATGGCAGTTAATTTCATCAACAAAAGTTCGGTGGTGTGGAATGACGTGGATGCCATTGTTGAAGAAATTTGGAGCCTGA
TGGGTTCTTTTGAAGAGATAGTTTTCCGTTACATTCCCAGGAATTATAATTACTTTGCGGACTTTTTAGCTAAACATGCGCGCACTGTGAGATCATCTGAGGAACTGG
mRNA sequenceShow/hide mRNA sequence
ATGAAGATTAATGCGTATTCGTCCCAATCGGAGCTCAGCCTAGTCGCCACTTCCTACTGGTCTATCTGGAATGATAGAAATAAAGTAGTCCACGGTGAATCCATTCTGCC
AGTTCAAGAAAGGAGTAAATGGATAAAAGAGTACCTGGTTTCCTTTCAGAAAGCGAATTCTGTCCGGCCTGTGCAATCCCGAGATAGAAGGGTTAACCACTCTCCCGCCA
ATGTTTGTTGGTCTCCTCCTCCGGATCATTTCTTGAAACTTAACACTGATGCTTCATGCCATCCATCCAGTTCTGATTCTGGCTTGAGCTTCTCAATTCGAAAATCGGAT
GGATCGATCCTGGCTGCTTCATCGATTTTCCTAGATTTCTCCCTTGAAGCTCATATGGTTGAATTACGATCTATCGTCGAAGGAATGAAAGTGGCTTGTGAGTTGGGCGG
TAAGAGAATTATCGTGGAGACAGATTGCCAGATGGCAGTTAATTTCATCAACAAAAGTTCGGTGGTGTGGAATGACGTGGATGCCATTGTTGAAGAAATTTGGAGCCTGA
TGGGTTCTTTTGAAGAGATAGTTTTCCGTTACATTCCCAGGAATTATAATTACTTTGCGGACTTTTTAGCTAAACATGCGCGCACTGTGAGATCATCTGAGGAACTGG
Protein sequenceShow/hide protein sequence
MKINAYSSQSELSLVATSYWSIWNDRNKVVHGESILPVQERSKWIKEYLVSFQKANSVRPVQSRDRRVNHSPANVCWSPPPDHFLKLNTDASCHPSSSDSGLSFSIRKSD
GSILAASSIFLDFSLEAHMVELRSIVEGMKVACELGGKRIIVETDCQMAVNFINKSSVVWNDVDAIVEEIWSLMGSFEEIVFRYIPRNYNYFADFLAKHARTVRSSEEL